mRNA_A-nodosum_M_contig966.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig966.2.1
Unique NamemRNA_A-nodosum_M_contig966.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.060e-35
Identity = 106/337 (31.45%), Postives = 170/337 (50.45%), Query Frame = 1 
Query:  403 LDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHELKRADPV-----LIDSRKVVFIGRNGAGKTSLIKSIKAGKGQLT--QEEELESVGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEFLGHKED-----LTGHLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVEEVMAG--VEQWKSERRTDPTLGTSSDKDLNLISGVQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYIHGERPLPVVPTKKRSWVSCETLRRDWQDVQNSL 1371
            L  L+  + + L +NPW  PP  +V++G+  ++KY  +++ A+        ++  KVV IG  GAGKTSL+ SI   +G  T    EE+ +VG+ ++ H   +G       + YD AGQ++Y+G+HQ FLT R LY+LVW+ S   G + +     ++  +  WL  L +R P S VLL     D  L   FV        G+    E  A   +++W+  R++           L ++    LVS          GL ++  R+ + +  T  ++PPSW +AL FLDALRD  +P  A RR++H +    V   +  S+++  TL + W D   S+
Sbjct:  331 LGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELRRHHQRNG----RIVEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCDGSL-QEFV--------GTAGAVESSARRQLQEWQGNRKSPGVT------KLTILQQPSLVSCDDG-----GGLSEVIARV-DAQGATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRWNDTVKSV 642
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.210e-30
Identity = 107/348 (30.75%), Postives = 169/348 (48.56%), Query Frame = 1 
Query:  376 GKDEDARVVLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHELKRA-----DPVLIDSRKVVFIGRNGAGKTSLIKSIKAGKGQLTQ--EEELESVGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEFLGHKEDLTGHLND----WLATLQMRAPHSRVLLCGTHMDKCLPSNFVT--KVLARLRGSPSVEEVMAGVEQWKSERRTDPTLGTSSDKDLNLISGVQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYIHGERPLP---VVPTKKRSWVSCETLRRDWQDVQNSL 1371
            G+ EDA  +++ L    Y+H   NPW  PP  VV  G+  +K+Y  +++ A     D   +   KVV +G   AGKTSL+ SI AG+G  T+    +  +VG+ ++  + +     +   + +D AGQ++Y G+HQ FLT R LY+LV + +++ G  +DL   ++D    WL  L +RAP S V+L     D  +     T  ++  R+R   +V     G+        TD          L L+ G+  VS         SGLP L   +   +  T   +PP+W +AL  + ALR   NP+ A R  +    PLP   V      +++S + L R W+ V ++L
Sbjct:   10 GETEDALRLVERLGDSLYLH--GNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQ-----DTKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHG-VDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSIDKFAETAERIQRRVRELVAVWHEARGLRGRSKGHVTD----------LTLLPGMSRVSCQEKGSPEASGLPALIALISR-QAATAIHVPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVADVHAFAFISKDELSRKWRSVVDNL 338
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.260e-30
Identity = 101/328 (30.79%), Postives = 160/328 (48.78%), Query Frame = 1 
Query:  436 LMNNPWECPPAPVVSKGIGPIKKYYHELKRADPVLIDSR-----KVVFIGRNGAGKTSLIKSIKAGKGQLT--QEEELESVGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEFLGHKED-----LTGHLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVEEVMAGV-EQWKSERRTDPTLGTSSDKDLNLISGVQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYIH-GERPLPVVPTKK-RSWVSCETLRRDWQDVQNSLE 1374
            L  NPW  PP  VV KG+  ++ Y  ++++A+    + +     KVV +G + AGKTSL+ SI  G+G  T     E+ +VG+ +  H  +         + YD AGQ++Y+G+HQ FLT R LY+LVW+     G  +D     +   +  WL  L +RAP S V+L     D  +     T  +        VEE +A + ++W+  R       T  D D+ ++    LVS    +     GL ++  R+   +      +PP+W +AL FLDALRD  +P +A R  +  G RP      +  RS+ +  +L   W+ V  ++E
Sbjct:  181 LGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRGLPTVGTPAEVSTVGIELLRHNLQG-----TAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDGSIEDFTGTAAV--------VEERVAVLRKEWRKARGFS---STRMDMDMTVLERSSLVSCLDGV-----GLQEMIDRIA-AQSAASMRVPPAWGLALTFLDALRDSRDPQQACRDCLSLGSRPKVGADREPGRSFFTENSLVEQWKGVVQNVE 486
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.260e-23
Identity = 97/304 (31.91%), Postives = 150/304 (49.34%), Query Frame = 1 
Query:  388 DARVVLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHEL-KRADPVLIDSRKVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNA---SEFLG-HKEDLTGHLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVE---EVMAGVEQWKSERRTDPTLGTSSDKDLNLISGVQ--LVSSSPTL------PYLKSGLPDLHKRLKECEEGTRWL---IPPSWRIALVFLDALRDG 1239
            D   +LD+   ++ + L  NPWE PP  +V+ G+  ++ YY  + K     +    KVV IG+   GKTSL +SI  G   +TQ   +ES V V V+ H+    DG     +++D AGQ+ Y+GL QLFLT R +Y+LVW+A   SE  G + EDL   +  WL  L  R P++ V+L G   D+          + R RG+ + +   E    ++ W  +       G S +  ++L+S  Q  L  S+P        P  KS     H+ + +  +  R +   +PPS+R+AL  L+ L   
Sbjct:  394 DLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKV---DGHPI--RIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLA--IAPWLRYLTFRVPNANVILVGNKWDR----------VVRTRGTVADDVECESRRWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQSCLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASS 680
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.230e-22
Identity = 119/364 (32.69%), Postives = 165/364 (45.33%), Query Frame = 1 
Query:  397 VVLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHELKRADPVLI--DSRKVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEF---LGH------KEDLTG----HLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSV---EEVMAGVEQWKSERRTDPT----LGTSSDKDLNLISG------------VQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYIHGERPLP----VVPTKKRSWVSCETLRRDWQDVQNSL 1371
            VVLD LS V    L+ NPW  PP  +V+KG   I+ Y+ +L  A+P  I   S KVV +G+ GAGKTSL +S+KA K   T E + ES V   V+    E      +  ++YD AGQ+ Y GL Q+FLT R + VLV NA EF   LG       +ED        + DWL ++  R P + V+L  T  D  L S    +   RL  +  +     V  G++  + E     T    +G     + N  S             V+   SSP+L Y     PD     +    G + ++P SW IAL  L+AL  G +PVE V          P    V  T     +  E L  +W++  + L
Sbjct:   74 VVLDRLSGVNLA-LLGNPWAEPPESIVAKGPKSIRGYFEDLY-AEPCWIKRSSVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMELEG-----SSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCD--LVSGNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFPIGDGEHGESNTGSDASKQGWACDWRHVEGDKSSPSLLYRLVNKPD-----EGGLRGVQMVLPRSWDIALTVLEALEHGRDPVEMVLLKSPDSERRPTETGVGKTNVYQAIKVEELGTNWRETVDEL 423
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.810e-22
Identity = 113/325 (34.77%), Postives = 162/325 (49.85%), Query Frame = 1 
Query:  400 VLDLL-SRV--KYVHLMNNPWECPPAPVVSKGIGPIKKYYHELKRADPVLIDSR--KVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEF---LGH------KED---LTG-HLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSV---EEVMAGVEQWKSERRTDPT----LGTSSDKDLN-----LISG-------VQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSWRIALVFLDALRDGVNPVEAV 1260
            +LDLL SR   +++ L +NPW  PP  +V+KG+  ++ Y+ +L  AD   I  R  KVV +G+ GAGKTSL +S+KA K   T E + ES V   V+  + E      +  ++YD AGQ+ Y GL Q+FLT R + VLV NA EF   LG       +ED   L G  + DWL ++  R P + V+L  T  D  L +  V +   R+  +        V  G++  + ER    T    +G S   +       L  G       V+   SSP+L Y     PD     +    G + ++P SW +AL FLD+L  G +PVE V
Sbjct:  120 LLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLF-ADHCRIKRRGVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMKLEG-----SSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFRQQLGSDNIDQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCD--LVNGNVEETGQRIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIGASEHGESRRGNHALKQGWACDWRDVEGDMSSPSLLYRLVNKPD-----QGGLRGVQMVLPRSWDVALTFLDSLEYGRHPVEMV 431
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.400e-22
Identity = 97/304 (31.91%), Postives = 147/304 (48.36%), Query Frame = 1 
Query:  388 DARVVLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHEL-KRADPVLIDSRKVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNA---SEFLG-HKEDLTGHLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVE---EVMAGVEQWKSERRTDPTLGTSSDKDLNLISGVQ--LVSSSPTL------PYLKSGLPDLHKRLKECEEGTRWL---IPPSWRIALVFLDALRDG 1239
            D   +LD    +  + L  NPWE PP  +V+ G+  ++ YY  + K     +    KVV IG+   GKTSL +SI  G   +TQ   +ES V V V+ H+    DG     +++D AGQ+ Y+GL QLFLT R +Y+LVW+A   SE  G + EDL   +  WL  L  R P + V+L G   D+          + R RG+ + +   E    ++ W  +       G S +  ++L+S  Q  L  S+P        P  KS     H+ + +  +  R +   +PPS+R+AL  L+ L   
Sbjct:  487 DLARLLDRFDGLVTLDLSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKV---DGHPI--RIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLA--IAPWLRYLTFRVPDANVILVGNKWDR----------VVRTRGTVADDVECESRRWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQSGLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASS 773
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.230e-22
Identity = 100/343 (29.15%), Postives = 152/343 (44.31%), Query Frame = 1 
Query:  385 EDARVVLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHEL--KRADPVLIDSRKVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELESVGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEF------LGHKEDLTGHLN--------DWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVEEVMAGVEQWKSERRTDPTLGTSSDKDLNLISGVQLVSSSPTLPYLKSGL-------PD---------------------LHKRLKECE---EGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYI 1272
            +    +L  LSR+ ++ +  NPW+ PP  VVSKGI  +++Y+ +L  +   PV     KVV +G+ GAGKTSL +S++ G+   T   E  +V + V     E  D      ++YD AGQ+ Y GL Q+FL+ R + +LV +   F      L H + L   L+        DWL +L  R P S V++  T  D  L +   T    R+ G+     +   +E W            +    +++  GV L S  P  P    G        PD                     LH+ +   +    G   ++P SW IAL  LDAL  G NPVE+ ++ +
Sbjct:  229 KQLEALLATLSRLGFL-VHENPWQEPPEAVVSKGISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKTSLRQSLRTGRPTPTSGSEESTVQIDV-----EQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCD--LAAGMGTDAAGRIEGA-----IGEWLESWSG----------AGMNAVHVEDGVSLTSCFPPTPNEDGGAALGKRKSPDEDSTWACDWREGVSVESQPSLLHRVMYNSKGNVRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNV 548
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.130e-22
Identity = 109/365 (29.86%), Postives = 166/365 (45.48%), Query Frame = 1 
Query:  400 VLDLLSRVKY--VHLMNNPWECPPAPVVSKGIGPIKKYYHELKRADPVLIDSR--KVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNASEF----LGHKEDLTGH---------LNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVEEVMAGVEQWKSERRTDPTLGTSSDKDLNLISGVQLVSSSPTLPY--------LKSGLPD---LHKRLKECE----EGTRWLIPPSWRIALVFLDALRDGVNPVEAVRRYIHGERPLPVVPTKKRSW-----VSCETLRRDWQDVQNSLELS 1380
            VLD + + K+  + L  NPW  PP P+V KG   ++ Y+ +L  A+P  I     KVV +G+ GAGKTSL +S+KA +   T E + ES V   V+    E      +  ++YD AGQ+ Y GL Q+FLT R + VLV NA +F         D  G          + DWL ++  R P++ V+L  T  D  L      K+ AR+  +     + + V       R +P +  +S  +  +    +  + S  L          +  G P    LH+ + + +     GT+ ++P SW IAL  L+AL  G +PVE V R            T +        ++ E L   WQ+  + LE S
Sbjct:  141 VLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLY-AEPCRIKRSIVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVEAMELEG-----SSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCD--LAGGNAGKIGARMEHACR-RWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERS 496
[Close]
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 7.220e-22
Identity = 98/295 (33.22%), Postives = 145/295 (49.15%), Query Frame = 1 
Query:  400 VLDLLSRVKYVHLMNNPWECPPAPVVSKGIGPIKKYYHELKRADPVLIDSR-KVVFIGRNGAGKTSLIKSIKAGKGQLTQEEELES-VGVSVQGHRFESGDGREADAKLYDLAGQMEYFGLHQLFLTERVLYVLVWNA---SEFLG-HKEDLTGHLNDWLATLQMRAPHSRVLLCGTHMDKCLPSNFVTKVLARLRGSPSVE-EVMAGVEQWKSERRTDPTLGTSSDKDLNLIS----GVQLVSSS----PTLPYLKSGLPDLHKRLKECEEGTRWL---IPPSWRIALVFLDAL 1230
            +LD L R+  + +  NPWE PP  +V  GI  ++ Y+  +       +    KVV +G+   GKTSL +SIK GK  +T+    ES V V V+ H     DG     +++D AGQ+ Y+GL QLFLT R +Y+LVW+A   SE  G + EDL   +  WL  L  R P + V+L G   D+ + +        R   +  VE E    +E W    R     G S +  ++L+S    GV  V+ S       P  KS     H+ + +  + TR +   +P S+R+AL  L+ L
Sbjct:  326 LLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPLKVVIVGKETVGKTSLRRSIKTGKPCMTRGGGEESTVHVDVEDHDL---DGHPI--RMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLA--IAPWLRHLTFRVPDASVILVGNKCDRVVRTR-------RTAVAVDVEHESRQWLESWIEIARGHQPRGISLEDGVSLVSCAASGVGAVAPSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEMLEEL 606
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig966.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX5_ECTSI1.060e-3531.45LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE2.210e-3030.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE6.260e-3030.79Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FX56_ECTSI1.260e-2331.91LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI1.230e-2232.69LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5L650_9PHAE1.810e-2234.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX69_ECTSI2.400e-2231.91LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL98_ECTSI3.230e-2229.15LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE5.130e-2229.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI7.220e-2233.22LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig966contigA-nodosum_M_contig966:84546..97075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size1404
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons7
Evalue1.74e-36
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size1404
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig966.2.1prot_A-nodosum_M_contig966.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig966 84546..97075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.732447-CDS-A-nodosum_M_contig966:84545..851181680870482.732447-CDS-A-nodosum_M_contig966:84545..85118Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 84546..85118 -
1680870482.7465405-CDS-A-nodosum_M_contig966:85684..859221680870482.7465405-CDS-A-nodosum_M_contig966:85684..85922Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 85685..85922 -
1680870482.7596786-CDS-A-nodosum_M_contig966:87135..873581680870482.7596786-CDS-A-nodosum_M_contig966:87135..87358Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 87136..87358 -
1680870482.770321-CDS-A-nodosum_M_contig966:89309..893811680870482.770321-CDS-A-nodosum_M_contig966:89309..89381Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 89310..89381 -
1680870482.7855158-CDS-A-nodosum_M_contig966:94384..944561680870482.7855158-CDS-A-nodosum_M_contig966:94384..94456Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 94385..94456 -
1680870482.7993283-CDS-A-nodosum_M_contig966:94872..949441680870482.7993283-CDS-A-nodosum_M_contig966:94872..94944Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 94873..94944 -
1680870482.813032-CDS-A-nodosum_M_contig966:96921..970751680870482.813032-CDS-A-nodosum_M_contig966:96921..97075Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig966 96922..97075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig966.2.1

>prot_A-nodosum_M_contig966.2.1 ID=prot_A-nodosum_M_contig966.2.1|Name=mRNA_A-nodosum_M_contig966.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=468bp
MFINVSIENHRVVKILLFHRPDASFLVGSLPRELGRMTALQTLKLYRNNL
TGPIPSELGNLTALQELHLNINKLTGSIPRELGRIVALQYLILERNELTG
LIPNELGNLTALKGLGLSDNKLTGLGKDEDARVVLDLLSRVKYVHLMNNP
WECPPAPVVSKGIGPIKKYYHELKRADPVLIDSRKVVFIGRNGAGKTSLI
KSIKAGKGQLTQEEELESVGVSVQGHRFESGDGREADAKLYDLAGQMEYF
GLHQLFLTERVLYVLVWNASEFLGHKEDLTGHLNDWLATLQMRAPHSRVL
LCGTHMDKCLPSNFVTKVLARLRGSPSVEEVMAGVEQWKSERRTDPTLGT
SSDKDLNLISGVQLVSSSPTLPYLKSGLPDLHKRLKECEEGTRWLIPPSW
RIALVFLDALRDGVNPVEAVRRYIHGERPLPVVPTKKRSWVSCETLRRDW
QDVQNSLELSPELKPDDP
back to top

mRNA from alignment at A-nodosum_M_contig966:84546..97075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig966.2.1 ID=mRNA_A-nodosum_M_contig966.2.1|Name=mRNA_A-nodosum_M_contig966.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12530bp|location=Sequence derived from alignment at A-nodosum_M_contig966:84546..97075- (Ascophyllum nodosum dioecious)
ATGTTTATTAATGTTTCGATTGAGAATCATCGCGTCGTGAAAATCCTGCT
GTTTCATCGCCCGGACGCCTCTTTTCTCGTAGGATCTCTACCGCGTGAGC
TGGGAAGAATGACCGCCTTGCAGACTCTAAAACTATATCGGAATAATTTG
ACCGGTGAGGCTTGCACGTGTGGAGATGCATCCGTGATAGATTTAATCGT
GGATAATGCCCGTGCGGCGGCGGGACTTGTCCATTAATAGCGGGTAAATA
AAATGGGGATCATATCCAGAACTCTAGCTTTTTAGTTCCTTGGCACGGTA
TTCGACGAACGAAACCATATCCTGTCAGGCGAAAAAGTTTGGCGTCGATA
TTCTTGTAACCGTAGTGATAAACGCTCCCCCCGTCCGAATCTGGAAACGC
TATCTTCAAAACCTCTAGATATGCCGCCAGCCATTTCTATCGAATTTATC
GTGGCTTTGAAAGAGAATCAAGAGAGTTTTGACGGGAAAATGATATATTT
TCCTTCATGGGGTCGAGTTGTTTCGGCCAGCGAATTTGCTTTTAATCGCA
ACCACACAGTGCCAATGTATATTTACCCGTCGGGCCGCCGGCAACTTCAA
GAGGAATGCGCAAAGTTTTAGATCCTCGACATAATATGTACACCCAAGGG
AAAGACGATACAAGTGTGTGTGAGGTTTTATGTTACGCTTCTCCTTCCGC
TGAGTCGATACCGGGCGCGTTTAGATCGCAAATTGTCCTAGATCTGTTTC
GTCGGATCACCTACAAGCTGACTTGATACTGTAAACTTATTTAGTCTCGG
TGTGTCCTTCGGAACCATGAATCGTGATGGTTACAGTAGCGCCAAAGCAC
TTTAGAAGGTCCATAACGTTGCAAAACGTTCTATGAGAGGCCCTGGAAGT
GATGATTTTGTTTTATCGACGCTTTCCGTGGAACGCGGTTCACAACCAGT
TTTCTTAGACGTTCTTTACTCTATGTAAACGTATTTGGGAGCCCCCGATT
TTTCCTTGGTCGTGGAGTTTTCTCCTTAAGTCCCAAAAGGGAAACCCTTA
CGGCTCAGGTGTGGTCTTCTGTAGGTATGCAACGTGGGTGGACATGTTGG
CCGAACAGCATGAAACAACGAAAGCATGGATTGCGATTGCGAGAGAAATT
CGCCCACACACTATGCTTGGTGGGTGTGCCACGGTTCTTACTGCTCTCAA
AACAGTACTCCCACCTAGTTCCCACTGATGGCCACGCCGATTTAACATTT
CTGTGAATGTTAGAGCGGGACCCTATTTGGCCCTAACAGTTTCCACTAGA
CGAGGAACACTGAAGTATCTGCACCACACTACTTAGCAGTATCGTAGCAA
TTTTGGATCTCGTACGGTTGATAGAAATAGTCGTGGCATGAAAAAAAAGA
GTCGTCCCCGTCGTCACACCTCGAAGGGACATTCCTGAAGAGCTGGATTG
AGTTCAGGCTGCTCCATGCTTGGAAGGAAGTATACAGCTTATAGGCAAAA
TATTTCAATGCAAGAAACAATAGGACAGAGGACGTGACCATCTGTTTTAA
TGTTATAATTAAGAATCATGACATCGTGAAAATCCTGCTATTTCTTCTCT
CGAATACCACTCTCGGAAAAGGATAACAATAACAGAGTGTCGGAGGGAGG
AATACCTCGTGTCGGCGATGTACTCTGTGTCAACGCTTTGACTGGTGTAG
CATTTTTTTATGAGACACCTAGTAAGGTACAGACCACGGATGCCCCCGAA
CGTTGGGAGACTTATCCTTTGACGGAGAGAGGTCACCAAACGGGTGTTCC
AATCTCATAAATGGCCGTATTTCTCAGCATGCGGTGGAATTGGAGCGATC
GCGATCTCGTGTAGAATTTCGATTTCCCGACTATACATAGATAACATGAA
TCTTCACGATGAAAAGGTGGCACTATTGCTTTGAAAAAAAATGAGAGAAC
GGCCCGCCCTGGTGACGTAAGCACGGTTTTCTCGACTTTTTCTGAAGCAG
ATTTCGCATCGTAGCCTAAGGTTGTTATCACCTGTCTCAATAGAGCACTG
ACATCAAATTCACAGTACATGGGCATTCTCGCGTGAAGTAAAGACAGTTA
GTTCGTCTTTTTGGCGTCACTCTACGCACAGGGCCGATACCTAGCGAACT
GGGAAACCTGACAGCTCTACAGGAGCTACACCTTAACATCAACAAACTGA
CCGGTGAGACTTATGTCTGTTGCGGTATATTTCTGGATGTTTATCGTGAT
GTACGTCACTCAATTGGCTGCATGGTCCATGGTGACACAATCGTACGAAC
AACAATATCGAATGTCCGGGGTTTTTTTCTTACAATTTATATTCGTTGAT
TTCTTTCTAATAACATTCCATATCGCCTCCATAGCGCGCAAGATTAAAAA
ATACTAAAACATATAAAATCGTTGTACTTTATTTGCGGCTTGCCATTGAA
CTATGCATATGCTCCCCGGGTCATTCAAAAGAACAGGTAGCGTCGTAATC
TAGGTTAGTACCGATTACCACGTAGGTTAGCGTAAAAATGTGTATTAATG
TTTCGATTGAGAATAATCGCGTCGTGAAAATCCTGCTGTTCCATCTCTCG
GACGCCACGTTTTCCGCAGGATCGATACCGCGTGAGCTGGGAAGAATTGT
CGCCTTGCAATATCTAATATTAGAGAGGAACGAACTGACCGGTGAGGCTA
CCACCTGTGGAGATGCATACGTAACAGCATGTAAACGTGGATAATGCCCG
TGTGGCGGTGGGATTTGTCCATTAATAGTGGGTCGATAAATGAGGATCAT
ATCTCGAACTCTAGCTTTTTAGTTCCTTGGGACGATACTCAACGAACGAA
ATCATATCCTGTCAGGCGAAAAAGCTTGGCGTCGATATTCTTGTAACCGT
CGTAGTGTTAAATGCTCCCCCACCCCCCGCCCGAATCTGGAAATGCTGTC
TTCAAAACCGCTAGATATGCGGCCGGCCATTTCTATCGAATTTATCGTAG
CTTTGAAAGAGAATCGAGAGAGTTTTAACGGGAAAGTGGTATATTTTCCC
TCATGGGGTCGAGTTGTTTTGGCCAGAGAATTTGCTTTTAATCGAACCAC
ACAGTGCCAATGTAAGGGAAAGACTCTACCCACGATAGGATGACATACCT
CGCGAGAGGGAGTGTGCGTGGTTGATGTAGAATTGCTTTGATGGGGATAT
AAACACACACTAAATTAGATGGGCGTAGGGACGAGCGTCCTCAGATGAAC
CACTTGAAGTACCGTACAGGTATGCAACAAACCAAATGAGGAAACCTATC
CTGGTCCCCTATTGTTCGACATGGAACTACTCTATCCGCATCGTGGTGAC
CAATGATCAGCCCCCCTTACGAGTGATCGGATAGGTACCTAATTAGCCCC
CCAAACCCATTATATCCTACCGAGACTTAGATAACCCCCCAGCTGTGCCA
TGGCATGAGCATTCATACGCGCACAAAAACATAAAGAAATCGGCATACAC
ACATCAAATCGCGAGCACATCGAATGCTTCGCTACAATGTCCGCATGCTG
ATATCCAGAAAAAAGCGTACTGAAATATTCTCCTGCGTAACAAGTTTTCA
AAGGAAACTTACTGTATAACTAAAACCTTTGACGCTCAAAGCATAGTCAA
ATAATACTCGGCATACTTCGCTATCAATCAACTAACGATCGCCATCTAAG
GCTTTAGTGATACGTAATTTCTCATCATATGCCGTATATTAGCCAAATCA
TTGCAACTGTTTAGGATTTTCCCAGCAACTGTTTTGGAACCACATGAAAT
TGGCATGTCGTGCGACAAGACAAATTCTTTTATATTCTATGTGGGCAACT
TCTGCCGACTACATTGATTGCCAGAAAATAGCTCTCACTATCAAGCATCA
GGATAAAAAGTGATTTCGTTATCACGGCATTCAGGCGAAATTTCAAACAT
TAAAATCGCTGGTGAAGACGAATGGATAGCACGGCTTCGATCTCAGAAAC
TTCAGTTTCATTACCAATTTCCTATCTTCTTCAAAGAGACGGCGAGGGGA
CTACCTATTCTTCCCCCTCTGGCCACGACATCGGGTACACTAGCTTGCGG
GAGCATTCCCTCCTTCCCGCTGACCACTCAGGTCTAATAGCTATGCGGGG
GGCTACCTCTTCTCCCGTTTTACCACGAATCAGGACATCGGGTACAATAG
CTTACGGGAGCATTCCCTCCTCCCCGCTGACCACTCAGGTCTAATAGCTA
TGCGGGGGCCTACCTCTTTCCCCCTTTTTACCACGAATCAGGTCCAATGC
TGGCGGGAGCATACCTCTTCCCCCCTTTCCACGACATTAAGCACCTGCCT
GCTGGTGACCCAAAATCTCGCATCCTACTCTGTAAAGAATCTACCTCCCG
GATGATTTTTGAAGAGATATATATGATCGACCTTTACTTTCATAAGCTTA
ACCAGTCATATTTTTTTACTCTGAATTTCTGCCATGCGTACCGTAATGAC
TCAATGTGTTTTGTTTCCAAGACGTCAAACATTGTTCCTAAAATGACGCA
GGCAAGCTTTTCATTATCGAGTTTAAGTGCATAGGTTTTTCTATGGCGAA
TTTTTGGATGACCGCAGGGTCTAATCCCCACCTGCATACAGATGACAGGG
TTCGTCGCACATTATGTCGACAGCACGTTTCTGCTGTGACAATGACTATT
ACAGTACTTGAAAACTATAAACTTTGTGAGGAAAATTAGCGGTGCATTGA
GTTCAGACTTTTTGAGTTACTCGGGCGGAAGCGCGATCATCAAACACTCG
CTTCGGACGTACTAGTTCTTGAAAACAGCCCTTACTGAACAGACAACACC
CGCTTCGACAGCAGGCTACGCGTGAATATCCTTCTGCACGAACGCACAGA
ACACGAGAGAAAGACGGAGTTATACGGGTACTAATTTTCTGCATTACAAA
AGCTTACTCGATCTTTTGAAATAAGCATACCCCATTGTGTAGCAGATCAA
AGAAGCACCAGTAGGCGATGGTGTCCAGAGCACGAGAATTCTTCGATCCT
CTCACGCTCCTAGGCGCTTCGTGGGGTTCCTTGTCGTCAAGCTCCTTGCT
CGATGACGCTCCCCGACAACCGATCGTCCCTAGCTTCCAGTAACCTCGAG
TCGGCCTCGACGACATACCCTCATCCTGACACGGCGTATTCAAAGCCGGC
CTTGCCTCGGAGAGTCAGCGAATTCACCGCTATGAACGGCGTAACATTTC
GCTGGTACCATACTCCTGCAGGTTTCTCCAGTGATCGACCTTCCAAAACA
CTCTTCAGCCTCGTCCAGCCCTAACACGGACCTCCTCACAAAGCAACGCG
CGCCACGATCCCAAGAACGGGCAGGCGCGGAAGCAAATCCATATTCCCCT
AGTCCATGAAGTCCTCGGCAGATGTCCAGGTCGAATTTTCTTATCCGATG
ACAAACTGAAGATTGGCGAGAGGAAGCTTCTGGAACAACGATTATAACAG
CATGCCTCTCGCAGCCATACCTCACGGTGGGTTTCAACCAGTCTAGTCTA
ACAGCCTCTTCTGCTAGCGTAAGGGGGGCTGATCGTAGCGTAAGGGAAAG
GCTCTACCCACGATAGGATGACATACCTCGCGAGAGGGAGTGTGCGTGGT
TGATGTAGGATTGCTTTGATGGGGATGTAAACACACACTAAATTAGATGG
GCGTAGGGACGAGCGTCCTCAGATGAACCACTTGAAGTACCGTACAGGTA
TGCAACAAACCAAATGAGGAAACCTATCCTGGTCCCCTATTAGTCAACAT
GGAACTACTCTATCCGCATCGTGAGTGACCAACGATCACAATGTATGTTC
ACCCGTCGGGCCGCCGGCAACTTCAAGAGGAATGCACAACATCGTAGACC
CTCGGCATAATCTGTACACCCAAGGGAAAGACGATACAAGTGTGAGATTT
TATGTGACGCTTCTCCTTGCGCTGAGTCGATACCGGGCGCGGTTAGATCG
CAAATTGTCCTAAATGCGTTTCATCGGATCACCTACAAGCTGACTTGATA
CGGTAAACTTATTTAGTCTCGGTGAGTCCTTCGGAAGCATGAATCGTGAT
GGTTACAGTAGCGCCAACGCGCTTTAGGAGGTCCATAGCGTTGCAAAACA
TGCTATGAGAGGCCCTGGAAGCGTTTTCCGTGGAAAGCGGTTCATAACCA
GTTTTCTTCGTCGTTCTTTACTCTATGTAAAAGTATTCGGGAGCCCCCGA
TTTTTCCTTAGTCGTGGAGTTTCCTCCTTAAGTCCCAAAAGGGAAACCCT
TACGGCTCAGGTGTGTTCTGCTGTAGGTATGCAACGTGGGTGGACATGTT
GGCCGAACAACATGAAGCGACGAAAGCATAGATTGCAATTGCGAGATAAA
TTCGCCTACACGCTATGTTTGGTGCGTGTGCCACGGTTCTTACTGCTCTC
AAAATACTACTCCCACCTAGTTCCCACTGATGGCCACGCCGTTTTAACAT
TTCTGTGGATGTCAGAGCTGGGTCCTATTTGGCCCTAACAGACTCCACAA
GACGAGAAACACTGAAGTATCTGCACCACACTACTTAGCAGTATCGTAGC
AATTTTGGGCCTCGTACGGTTGATAGAAATAGTCGAGCATGAAAAAAAGA
GTCGTCCCCGTCGTCACACCTCGCAGGGACATTCCTGAAGAGCTGGATTA
AGTTCAGGCTGTTTTATGCTTGGAAAGTATACAGATTATAAGTAAAATAT
TTTCATGCAAGAAACAATAGGACATAGAACGTGACCATCTGTATTAATAA
TGTTATAATTAAGGATCATGGCATCGTGAATATCCTGCGATTCCTTCTTT
CGAATACCACTCTTAAAAAAGGACAACAATAACAGAGCGTCGGAGGGAGG
AATAACTCGTGTCGGGGATGTACTCTGTGTCAACACTTTGACTGGAGTAG
CATTTTTTATGAGAAACCTAGTAAGGTACAGACCACGGATGCGCTCGAAC
GTTGGAAGACTTATCCTTTGACGAAGAGAGGTCACCAAACGGGTGTTCCA
ATCTCTTAAATAGCCGGATTTTTCAGCATGCCGTGGAATTGGAGCGGTAG
CGATCTCGATTTCCCGACTTTTTTATTCATTTTTTTCTTTAATCTCACTT
ATAGCCGATGGACCTCATCATTACCATCCTGCCTGTGGTCACAAAGGATC
TTCCCATCTCTCCCCGGTTCACGCCTTACATTTTTTTTATCGCGATGCAA
GTTCTCAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACTTACT
CACGTTTCCACGCTTTCCGTTACGAAAGAAAGAACACAAATCCTACTTTG
GTAAGAATCGAACTCACGACTTCCGCACTAGCAGGTGTGCAGATTACCTA
CTAGACCACTCGGGCGACGAGGGCTGCGACTAAACATAGATAACATGAAT
CTTCACGTTAAAAAGGCGGCAATATTACTTCTTTTTTTTTAAATAGAGAG
AACGACACGCCCCGGTGACGTGAGCACGGTTTTCTCGACTTCTTCTGAAG
CAGATTTCGCATTGTAGCCTAAGGTTGTTATCACCTGCCTCGTTGACAAA
TAGAGCACTGACATCAAATCCACTGTGCATGGGCATTCTCGCGTGGTGAA
GTAAAAACAGCAAGTTCGTCGTTTTGGCGTCACTCTACGCACAGGGCTGA
TACCGAACGAACTGGGAAACCTGACAGCTCTAAAGGGACTAGGCCTTTCT
GACAACAAACTGACCGGTGAGACCTATGTATGTTGCGGTATATTTCTGGA
TGTTTATCGTGATGTACGTCACTCAATTGACTGCGTGGTCCATGGTGACA
GGATCGTATGAAGAGTAATATCGAATGTCCGGGATTCCATATCGCCTCCA
CAGCGCGCAAGATTGAAAAAGACAAAAATATATACATTATCGTTGTACTT
CAGTGTTGCGGCTTACCATTGAATTATGCATATGCTCCCCGGGTCATTCA
GAAGACCAGGTAGCGTCGTAATCTAGGTTCGCACCGATTACCACGTAGGT
TAACGAAAAAATGTTTATTAATGTTTCGATTGAGAATCATCGCGTCGTGA
AAATCCTGCTGTTCCATCTCTCGGACGCCACTTTTTCCGTACGATCGATA
CCGCGTAAGCTGGGAAGAATGACCGCCTTGCAGACTCTATATCTATCAGA
ATGAACTGACCGGCGAGGCTTGTACGTGTGGAGATGCATCCGTGAAAGAT
TTAATCGTGGATAATGCCCGTGTGGCGGCGGAATTTATCCATTAATAGTG
GGTCAATAAATGAGGATCATATCCAGAACTCTAGCTTTTTAGTTCCTTGG
GACGATATTCGACGAACGAAACCATATCATGTCAGGCGCAAACGTTTGGC
GTCAATATTTTTGTAACCGTAGTGATAAACGCTCCCCCCACTCCCCGCCC
GAATCTGGAAATGCTGTCTTCCAAACCTCTAAATATGCGGCCAGCCATTC
CTATCGAATTCATCGTGGCTTTGAAAGAGAATCAAGAGAGTTTTGACGGG
AAAATAGTATATTTTCCCTCATGGGGTCGAGTTGTTTTGGCCAGCGAATT
TGTTTTAATCGCAACCACACAGTGTCAATGTATGTTCACCCGTCGGGCCG
CCGGCAACTTCAAGAGGATTGCACAAAGTTTTAGACCCTCGACATAATCT
GTACACCCAAGGGAAAGACGATACAAGTGCGCGGTTTTATGTGACGCTTC
TCCTTGCGCTGAGTCGATACCGTGCGCGTTTAGATCGCAAATTGTCCTAA
ATGTGTTTCATCGGATCACCTACAAGCTAACTTGATACGGTAAACTTAAT
TAGTCTCGGTGTGTCCTTCGGAAGCATGAACCGTGATGGTTACAGTAGCG
CCAAAGCGCTCTAGGAGGTCCATAGCGTTGTAAAACGTTCTATGAGAGGC
CCTAGAAGTGTTGATTTTGTTTTATCGACGCTTTCCGTGGAACGCGGTTC
ATATAACCAGTTTTCTTTGTCGTTCTTTACTGTATGTAAAAGTAATTGGA
AGCCCCCGATTTTTCCTTGGTCGTGGAGTTTCCTCCTTAAGTCCCAAAAG
GGAAGCCCTTACGGCTCAGGTGTGTTCTGCTGTAGGTATGCAACGTGGGT
GGGCATATTGGCCGAACAGCATGAAGCGACGAAAGCATGGATTGCAATTG
CGAGAGAAACTCGCCTACCCGCTATGCTTGGTGCGTGTGCCACGGTCCTT
ACTGCTCTCAAAACAGTACTCCCACCTAGTTCCCACTGATGGCCACGCCG
ATTTAACATTTCTGTGAGTGTCAGAGCGGGGTCCTATTTGGCCCTAACAT
ATTCCACTAGAGACAAAAAACTCAAGTATCTGCACGAAACTACCTGTCAG
CATCGTAGCAATTTTGGGTCTCGTGCGGTTGATAGAAATAGTCGTGGCAT
GAAAAAAAAAGTCGTCCCCGTCGTCACACCTCGAAGGGACATTCCTGAAG
AGCTGGATTAAGTCCAGGCTGCTCCATGATGCTTGGAAAGTATACGACTC
ACAAGTAAAATATTTTAATGTAAGAGAACGTGATCATCTGTCCATCGAGA
GCGATATTTTTGTCTGATGACAATTCTATTTCCAAAACATATTACATCGA
GTCTGGTGTATAACTTCGTCTCATGAGATCGTCAAATTTCTTTCCGGCCG
TTAATTGATTATATCAGGGCTGGGAAAGGACGAAGACGCACGCGTCGTTC
TAGATCTGTTGTCGCGTGTGAAGTACGTCCATTTGATGAACAATCCATGG
GAATGCCCACCAGCACCTGTCGTCTCCAAGGGCATCGGTCCGATAAAGAA
GTACTACCATGAGCTCAAAAGGGCGGATCCTGTCTTGATCGATTCGCGAA
AGGTGGTTTTCATCGGGCGTAATGGAGCTGGGAAGACCAGGTGCGGCCAA
GAAAAGACTTGACAGGGCGTGACATTGACGATACCTGTTCAAGTGTGATG
AACGAAAACAGTAAACATTAATTGCGAGAAACCCTGTGGCAGCTCCAGCC
GGCGACCGCGCCCCTCTGCTATCAAACTCCTGCTGCCGGGGTGCTAGAGA
AACATCACATACGAGCCTGACTCGTAAAAAGTATTTCATGGTCATCGGGA
AAAGGGATAACGTGCTGCTTGGCTTCGTTATGATAGTTGTGTTTTTAGCA
TCATTATAAAACATACCCGAGTAAGTAATACTCCGTATTATGTTGTATTT
TATTTTTTCAGCTGATCGAGTGCTTTCTACCTTGCGTAGAGCTACATGTT
AATTGAGCAAAGCGAAACAACCAGCATTCTCTTCACCTCCCAACCGAACC
TTCGGCCACAAATACGGTGATAATTTGTTTTGGTTTAGGAACCAATAGCT
CGACAAACACGGAGTTTGTATCTCAACATTTCAATTAGTCCGCGTGACAA
ATGGTATATCAGGGTTTCGCTTGACAAGCTTTTCTTGATACGTTGCACCC
AGCGACTGCTGGTAGAGTTCGTAGATGAAATTAGGGCCAACTTTCGTGAC
CAAGAGCATCTTCCGATGTTTCCCCGACCCCGTTAGTCCAGGGCTAAACT
CGACATGTTGTTTAGAAATGTTGCCGGTTAACCAACTTTAATTCGTTCTT
GCACTACACGTGTGCCCTTCCCTTTCTGCCGAAGATCCGTCGGTCGATAG
CGCTCTCACGACCCCCCTTCCGCGCCACTTTAATCTGGACACTTTAGTCA
CCACCGTTTTCGTCACAAGTGGTATCGGCGAGCCGTATCGAAATCCTAGA
GCCCACTCAATAATCTGCATCCTATCGTTGATGTGTTAGATGCAAGTACA
GTACGGGCATGACTTTTGCTGTTGGAGAGTGGGGTTGCCCAAAATCGTCC
ATATCGTGTACAGTCTTCTGATTCGTATAATTTTATTCAGGTTGATAACT
AATACGACGCTGAATGTGAAAAACAACATCGCCGTGGTACAGATGACGAC
ATTAACGTGTATATTACGTGTCTCTGGCGATAACTAACTCAACAGGACTC
CGGGGCATACACCGTCGTCGTCACGGATCAACCACATTCGCCCCTCATTA
TTTCTAATATTTTTTGTTATGCTGTACGTAATTGTTTCCCCGTTGCTCGA
AAGCCTGATCAAAAGCATCAAGGCCGGGAAGGGGCAACTGACGCAAGAGG
AAGAACTCGAATCCGTGGGAGTGTCAGTTCAGGGTCACAGATTTGAGAGT
GGAGATGGACGTGAAGCCGACGCAAAACTGTACGATCTAGCAGGTCAGAT
GGAGTACTTCGGTCTTCACCAACTGTTCCTCACTGAGAGGGTTCTTTACG
TGCTGGTGTGGAATGCCTCCGAGTTCCTGGGCCATAAAGAGGTGAGATAC
TTGACTCTCCACCATTGAGGAGAAAGATGTATGCTTCCTCTATGAACCCT
ATTATTTTGGGCAACACGTTCCGATCTAGCGAGCGCTCTTTCTGTTGTCG
TTATCCCTTGGCCGAGGTATATGATCGCCGACCGACATAAATACCCGCCT
GGGTTAGTCTGCATGGGTTGTCGTTGCTGTAGGGGTCTTGAAAGTAGGCT
CCTGTGAATACCAACTACTATTAATAGGGTACTTCATTCAAATGGTTTAA
ATGTCGTAGCGTAGCACCTCCACCATCAATAGTCCTGAAGAAGTGACTTT
TGTTTGGGGAGGGGAAGTCTTACTGGTTTGAAGAAATGAGCGAATCACCC
CAATGCCGATGTAGCCTCTCACTTGTTAAAGGCATTAAAATCGACAGCCC
ATATATGCTTCCTCGGGGTAGAGAGGTGCCGACGCGCCATTTTCCGGGAT
TTTACCGTGCGATGACCGTAGATCCGCGTTCCACGTCGCGACCTTGTTTC
TTTTAATTCGTCTGGTTCTTGTCATGATATCGTCCTGACTCAAATGTCCC
TTTTCAGGATCTTACGGGCCACTTGAACGACTGGCTTGCAACGCTGCAGA
TGAGGGCTCCCCACTCGAGGGTTCTTCTTTGCGGTACACACATGGATAAG
TGCCTGCCGAGTAATTTCGTGACAAAAGTACTGGCGCGGCTGAGAGGATC
TCCCTCGGTTGAGGAGGTCATGGCGGGTGTTGAGCAGTGGAAAAGCGAAC
GTCGGACAGACCCCACTCTTGGAACGTCCTCTGACAAAGATCTTAACCTG
ATTAGTGGGGTTCAGCTGGTCAGCTCCTCTCCAACCTTGCCTTACTTGAA
GAGCGGCTTGCCCGATCTACATAAGCGACTGAAGGAATGTGAGGAGGGCA
CGCGTTGGTTGATCCCGCCGTCGTGGCGTATCGCTCTAGTGTTTCTGGAC
GCCTTGCGGGATGGAGTGAATCCAGTGGAAGCTGTACGACGTTACATACA
CGGAGAACGACCGCTTCCGGTGGTACCTACGAAAAAAAGAAGCTGGGTAT
CCTGCGAAACTCTTAGGCGTGACTGGCAGGACGTCCAGAACTCCCTCGAG
CTTTCGCCGGAACTCAAACCGGACGACCCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig966:84546..97075-

>mRNA_A-nodosum_M_contig966.2.1 ID=mRNA_A-nodosum_M_contig966.2.1|Name=mRNA_A-nodosum_M_contig966.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at A-nodosum_M_contig966:84546..97075- (Ascophyllum nodosum dioecious)
ATGTTTATTAATGTTTCGATTGAGAATCATCGCGTCGTGAAAATCCTGCT
GTTTCATCGCCCGGACGCCTCTTTTCTCGTAGGATCTCTACCGCGTGAGC
TGGGAAGAATGACCGCCTTGCAGACTCTAAAACTATATCGGAATAATTTG
ACCGGGCCGATACCTAGCGAACTGGGAAACCTGACAGCTCTACAGGAGCT
ACACCTTAACATCAACAAACTGACCGGATCGATACCGCGTGAGCTGGGAA
GAATTGTCGCCTTGCAATATCTAATATTAGAGAGGAACGAACTGACCGGG
CTGATACCGAACGAACTGGGAAACCTGACAGCTCTAAAGGGACTAGGCCT
TTCTGACAACAAACTGACCGGGCTGGGAAAGGACGAAGACGCACGCGTCG
TTCTAGATCTGTTGTCGCGTGTGAAGTACGTCCATTTGATGAACAATCCA
TGGGAATGCCCACCAGCACCTGTCGTCTCCAAGGGCATCGGTCCGATAAA
GAAGTACTACCATGAGCTCAAAAGGGCGGATCCTGTCTTGATCGATTCGC
GAAAGGTGGTTTTCATCGGGCGTAATGGAGCTGGGAAGACCAGCCTGATC
AAAAGCATCAAGGCCGGGAAGGGGCAACTGACGCAAGAGGAAGAACTCGA
ATCCGTGGGAGTGTCAGTTCAGGGTCACAGATTTGAGAGTGGAGATGGAC
GTGAAGCCGACGCAAAACTGTACGATCTAGCAGGTCAGATGGAGTACTTC
GGTCTTCACCAACTGTTCCTCACTGAGAGGGTTCTTTACGTGCTGGTGTG
GAATGCCTCCGAGTTCCTGGGCCATAAAGAGGATCTTACGGGCCACTTGA
ACGACTGGCTTGCAACGCTGCAGATGAGGGCTCCCCACTCGAGGGTTCTT
CTTTGCGGTACACACATGGATAAGTGCCTGCCGAGTAATTTCGTGACAAA
AGTACTGGCGCGGCTGAGAGGATCTCCCTCGGTTGAGGAGGTCATGGCGG
GTGTTGAGCAGTGGAAAAGCGAACGTCGGACAGACCCCACTCTTGGAACG
TCCTCTGACAAAGATCTTAACCTGATTAGTGGGGTTCAGCTGGTCAGCTC
CTCTCCAACCTTGCCTTACTTGAAGAGCGGCTTGCCCGATCTACATAAGC
GACTGAAGGAATGTGAGGAGGGCACGCGTTGGTTGATCCCGCCGTCGTGG
CGTATCGCTCTAGTGTTTCTGGACGCCTTGCGGGATGGAGTGAATCCAGT
GGAAGCTGTACGACGTTACATACACGGAGAACGACCGCTTCCGGTGGTAC
CTACGAAAAAAAGAAGCTGGGTATCCTGCGAAACTCTTAGGCGTGACTGG
CAGGACGTCCAGAACTCCCTCGAGCTTTCGCCGGAACTCAAACCGGACGA
CCCT
back to top