mRNA_A-nodosum_M_contig9642.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9642.1.1
Unique NamemRNA_A-nodosum_M_contig9642.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9642contigA-nodosum_M_contig9642:2302..4772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.2601233-CDS-A-nodosum_M_contig9642:2301..24091680870482.2601233-CDS-A-nodosum_M_contig9642:2301..2409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9642 2302..2409 -
1680870482.27215-CDS-A-nodosum_M_contig9642:4709..47721680870482.27215-CDS-A-nodosum_M_contig9642:4709..4772Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9642 4710..4772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9642.1.1prot_A-nodosum_M_contig9642.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9642 2302..4772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9642.1.1

>prot_A-nodosum_M_contig9642.1.1 ID=prot_A-nodosum_M_contig9642.1.1|Name=mRNA_A-nodosum_M_contig9642.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
NIKHQAASLVDVGCSSLGETEDILPLAQLYGDVMWTQEKFGEVAFAEAHR
RSRKLM*
back to top

mRNA from alignment at A-nodosum_M_contig9642:2302..4772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9642.1.1 ID=mRNA_A-nodosum_M_contig9642.1.1|Name=mRNA_A-nodosum_M_contig9642.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2471bp|location=Sequence derived from alignment at A-nodosum_M_contig9642:2302..4772- (Ascophyllum nodosum dioecious)
AACATCAAGCATCAAGCAGCATCCCTCGTGGACGTCGGTTGTTCATCGCT
AGGAGAGACCGAGGTACGAGTGCATTACTATTGATAGTAATACTGTAGTA
ATGTGCCGCATTAACCTCTAAACCTTCCCGAGAACGACATCGTTACCGGT
TTTTTTTTGTAGTATGGGGAAGTAGAGTGGAGTACGTTGTAAGTTTTGCT
TCCGGATGGTGTTTTCAGGTGTACCGTTTGCCAGCGGACTGTGGTGCATC
TTGAAATCAGCTAATTCGTGCTGTAGTCACACGAACTCACGAACTGGGAT
TTTATTTTTTATTTTTCCTTACATCCATCATGCCCAAGAAGTGGAGAACG
ATTGTTTCGTGGGTACACAAAATTTGACTTCACGGTGGACGAGGGAAAGG
GACGGCTGAACCCTTCTCGTGAGAAAATTAAGGAAGCACAGCAGAAGGAA
GGTGGAGAAATTCTGTGTGACCTTCCTCCTCTGTGACCTCGGCTGGTGCG
TCCACAAGTTGTTGTTGTTGTTGTCTTCACATTAACCGATCGGGCCTCAA
CCATACCCAGTAATATACGTGGTTGCCAATCCGGTACGTGGTCACAAAGA
GGTACCAAGGTCAACGGGTCACATCATGGTGACAACCCGCTACTCAGACC
AACAGGGATCCAAGTCGCGACAAAAAGTTATGCGACTCTACAAGCGATGG
CACCGACCAATAATAGCAAAACGGTTCATCAAACTTCCTTACTCCATATC
GAGAGCAGCCTCGATCGACTCGGATTGTTGTCGCCTACCCACGACCAGCG
TTCTCAGCAACAAATCGGACAAACACGTTCCAACCAGTTTTGATCAACAA
TTCCAAGTTTCTCAAGGCTACACATCGTACAAAAATAAGGAAAATTGAAA
TACCGAGGTCCATGGTGGTGGAGGCCTTGAGCTGATAAAGCCGGCGCGCG
AGCCAGCATCCAGCCGTCACAAGGCCTGTGCATCCTTGATAAAGCCCCAC
GAATCTTGCCTGTGCATCCTTGATAAAGCCCCACGAATCTTGCCCGTTCG
CCGCTCCATGTGGCCCTCGTAGGAAGAAAAATGACCGTGGTCAGAGATCA
GCTTTCTCCTCAGAAACCTCCCGGTTCGCGCTTTCGATTCTCGCGCACAG
GGGTTCAGCCCTCCCCTGGCTCGTCAACGATCGAGCTGCCCTCCGCCTTC
GCCGAATCTGGTGCATACCCACCTGATAGAGAACCACCAGGCTCTCCGCG
ACAGTGCTCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGCCACCAAA
TTGGAGCTCGGAAGAGGCTGCACACCTGAAAACACCATCCTCAACCAACC
ATACTGCCGCCGCGCCTCAACCGACAGGTCGGATCGCGAAGGCAGCCAGT
TGGCTGCATCTCTCGAGGGTGAGCCCGGCCCTACTCCCGTCTGACTTCCA
GAATAAATGGGATGACACCCCCCCCTTGGGATGATCAATGCGAGTGGCAT
AGAATGACTAGGAAATACACACTCACAACACGCTACTAACTACTCTCTGT
AAGTGAGAATTCAATCATTTCAATCATATCATCAATGAAGTCCTCACTGA
TAGGATTTGCTGTTGAGTAGTGCACACACATCAACTGGTCCATGGTGACC
TGGAAACGCAGCACCTGTTACTGGAATTACCTTGAGGACTACTGGCCCTG
GGCCGGCGGACTCTCGGCAGTGAACGCCAACGGTACGCAAGTGCTTGGCC
CGAGAAACTCGGGACTGACCCAATGGCGCGCCGCGGGAATTGGGAGGAAT
CCCGTGAGTCGGAACCAGATTCAGGCTGAGTATAGAGAATGAGTAGGCTG
ACGCGGGACGGGACGGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCG
CCACCGGAGACAAGGAAATATTTATTTTCCCTGTTCAGCTGACCACGAGC
AGGATTGGCAGCTTTATCCGGTCGATCCATACTCGTACTCTTGTTATATG
TGTGATGTGATGACCATACACAGAGCTATAGACTACAAGCAGCACCAAAT
ACCTTGTACAGCACAGTAGTAACAAAATACAAAACATGATTCGACAGGGT
TCTGTACTTCATTGTACTACTTAGTAGTAAATACTGGCACGTAACATGAC
TAGACAGCAACTGCTGTAGAAGCTAGTGTAGCGGGCTACAGGTGCTTACT
TATCTTGTAAGACAGTACGCAACGTGTCCGCAGTTCGGAAGCTGAGGAGT
TCCAGCGATGCGCCCTGCCCCGACTGTGAGTCACTACCCTTTAACCGTAG
CTCACCTTCGTGGCCAACGCTCGAACCATCTATGCGGTGCACTCAACGGC
CTGCGCTGAGCAGGACATCTTGCCCTTAGCGCAGCTGTACGGAGACGTGA
TGTGGACCCAGGAGAAGTTCGGCGAGGTTGCTTTTGCTGAAGCGCATCGA
AGAAGCAGGAAGTTGATGTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9642:2302..4772-

>mRNA_A-nodosum_M_contig9642.1.1 ID=mRNA_A-nodosum_M_contig9642.1.1|Name=mRNA_A-nodosum_M_contig9642.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig9642:2302..4772- (Ascophyllum nodosum dioecious)
AACATCAAGCATCAAGCAGCATCCCTCGTGGACGTCGGTTGTTCATCGCT
AGGAGAGACCGAGGACATCTTGCCCTTAGCGCAGCTGTACGGAGACGTGA
TGTGGACCCAGGAGAAGTTCGGCGAGGTTGCTTTTGCTGAAGCGCATCGA
AGAAGCAGGAAGTTGATGTGA
back to top