mRNA_A-nodosum_M_contig9638.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9638.3.1
Unique NamemRNA_A-nodosum_M_contig9638.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.460e-19
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 AEYHDLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSGYEVPSGNFPDAELPEICANG 194
            A YHD+YW  GDG  Q DP +HGQ T  L G+V+RIS P+ G+GYE+P+GN     LPEICA+G
Sbjct:  251 ASYHDIYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASG 314          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.540e-16
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 3
Query:   15 DLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSGYEVPSGNFPDAELPEICANG 194
            DLYW  GDGGPQ DP +H Q T  + G ++RI+ PS G GY +PSGN+    L EICA G
Sbjct:  318 DLYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIG 377          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.630e-16
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3
Query:    3 AEYHDLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSGYEVPSGNFPDAELPEICANG 194
            A   DLYW  GDGGPQ D N+H Q T  + G ++RI+ PS GSGY +PSGN+    L EICA G
Sbjct:  251 ASPQDLYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIG 314          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-15
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 3
Query:    9 YHDLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSGYEVPSGNFPDAELPEICANG 194
            Y DLYW  GDGGPQ DP +H Q    + G ++RIS P+ G+GY +PSGN+P A+  E+CA G
Sbjct:  270 YSDLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPGAKA-EVCAIG 330          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    9 YHDLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSK--GSGYEVPSGNFPDA---ELPEICANG 194
            YHD+YW +GDGGPQ DP++  Q    L G++VRIS PS   G+GYE+P+GN  D    E PEICA G
Sbjct:  321 YHDIYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWG 387          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.940e-9
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 3
Query:   12 HDLYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSK-GSGYEVPSGN--FPDAELPEICANG 194
            H+L+WA+GD GPQ D  D GQ  ++L G+++RI   S+  SGY +PSGN         EICA G
Sbjct:  307 HELFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGRGEICAQG 370          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: A0A850G5C2_9DELT (PQQ-dependent sugar dehydrogenase n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850G5C2_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 3
Query:   18 LYWALGDGGPQEDPNDHGQRTDVLFGTVVRIS-APSKGSGYEVPSGN--FPDAE-LPEICANG 194
            LY+++GDGG Q DPN+  Q     FG ++R+   PS   GY +P+ N    DA+ LPEI A G
Sbjct:  234 LYFSIGDGGDQGDPNNRAQDLSTYFGKIMRVDITPSGDEGYSIPADNPFVDDADVLPEIWAYG 296          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: A0A2F0ALB3_9DELT (Cytochrome c domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2F0ALB3_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 2.850e-6
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 3
Query:   18 LYWALGDGGPQEDPNDHGQRTDVLFGTVVRISA-PSKGSGYEVPSGN-FPDAE-LPEICANG 194
            LY +LGDGG   DP  HGQ TD L G+++RI   PS+G  Y +P+ N F D    PEI   G
Sbjct:  235 LYISLGDGGAAGDPLGHGQNTDSLLGSILRIDVTPSQGRPYTIPTNNPFSDGGGRPEIWTWG 296          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: A0A0C1ZMS2_9DELT (GSDH domain-containing protein n=2 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C1ZMS2_9DELT)

HSP 1 Score: 52.0 bits (123), Expect = 3.890e-6
Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = 3
Query:   18 LYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSGYEVPSGN--FPDAELPEICANG 194
            LY   GDGG +EDPN HGQ TD L G+++RI      S Y +P+ N        PEI A G
Sbjct:  162 LYIGFGDGGSKEDPNGHGQNTDTLLGSMLRIDVDG-ASPYAIPADNPFAAGGGAPEIFAWG 221          
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Match: UPI00190CDE7F (PQQ-dependent sugar dehydrogenase n=1 Tax=Luteolibacter yonseiensis TaxID=1144680 RepID=UPI00190CDE7F)

HSP 1 Score: 51.6 bits (122), Expect = 5.340e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 3
Query:   18 LYWALGDGGPQEDPNDHGQRTDVLFGTVVRISAPSKGSG--YEVPSGN-FPDAE--LPEICANG 194
            LY+ +GD GPQ+DP  HGQ   +L G ++RI    + +G  Y +P  N F D E   PEI A+G
Sbjct:  343 LYFGMGDTGPQDDPQGHGQDMSLLLGKMMRIDIDHQDTGLPYAIPRDNPFRDVEGVRPEIWASG 406          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9638.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G6T7_ECTSI1.460e-1957.81WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4P3_ECTSI3.540e-1655.00Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE4.630e-1654.69GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G957_ECTSI1.690e-1553.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP1_ECTSI1.100e-1455.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN8_ECTSI2.940e-946.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A850G5C2_9DELT1.500e-644.44PQQ-dependent sugar dehydrogenase n=1 Tax=Pseudenh... [more]
A0A2F0ALB3_9DELT2.850e-648.39Cytochrome c domain-containing protein n=1 Tax=Myx... [more]
A0A0C1ZMS2_9DELT3.890e-645.90GSDH domain-containing protein n=2 Tax=Enhygromyxa... [more]
UPI00190CDE7F5.340e-643.75PQQ-dependent sugar dehydrogenase n=1 Tax=Luteolib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9638contigA-nodosum_M_contig9638:7340..8044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.4340549-UTR-A-nodosum_M_contig9638:7339..73511680870480.4340549-UTR-A-nodosum_M_contig9638:7339..7351Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9638 7340..7351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.4495206-CDS-A-nodosum_M_contig9638:7351..75071680870480.4495206-CDS-A-nodosum_M_contig9638:7351..7507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 7352..7507 +
1680870480.4602263-CDS-A-nodosum_M_contig9638:8017..80441680870480.4602263-CDS-A-nodosum_M_contig9638:8017..8044Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 8018..8044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9638.3.1prot_A-nodosum_M_contig9638.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9638 7352..8044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9638.3.1

>prot_A-nodosum_M_contig9638.3.1 ID=prot_A-nodosum_M_contig9638.3.1|Name=mRNA_A-nodosum_M_contig9638.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MTCTGLWETGVRKRTRMTTASARMSSLGPWYEFLHPRRARATKYQVATSR
TQNCPRSAPMV
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mRNA from alignment at A-nodosum_M_contig9638:7340..8044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9638.3.1 ID=mRNA_A-nodosum_M_contig9638.3.1|Name=mRNA_A-nodosum_M_contig9638.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:7340..8044+ (Ascophyllum nodosum dioecious)
AGGCCGAGTACCATGACCTGTACTGGGCTCTGGGAGACGGGGGTCCGCAA GAGGACCCGAATGACCACGGCCAGCGCACGGATGTCCTCTTTGGGACCGT GGTACGAATTTCTGCACCCTCGAAGGGCTCGGGCTACGAAGTACCAAGTG GCAACTTCCCGGACGCAGGTAAACTATAATTTGAAGAAACTAGTTCTGCT TCAGAGTTTACGAGAGGGCGAGAAACGGTGCCAGGGTAGAGGCGTATGGA TGAAGGAGTATTTGGCCGAAATATAATGGGTGGGATGAGACCCAGACTGT CACGCGGAAACATCACCATCGTCGGCCTCGCGCAATTCATAGCTTTCGTA ACGAATCGCTCCTTTTGTTCTCGCGCTTTTGTCTGAAGGCATATATGCTT GAATGTATTCAGAAATAATATGCCTGCATAATGTATAGCATTGCATCAAA GTAGTGGGAAAGGGTAAACGAGATTGATGTGCCAGTCCATGAACACCTCT ACAAGGGTGAACGTTTTAAAACATTATAACTACGAGAAGCTTAAAATAAT GGCGGTCGCTAATTTACTTCCGACAGAACACGGGAATGTAGTATGTTCCT AGAGGCTCCTCGGTAGCACGGCATATTAATTAACACGAATCATCGTCTTC TAATCCCCCTACTTTTTGTACTTTTAAGAATTGCCCGAGATCTGCGCCAA TGGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9638:7340..8044+

>mRNA_A-nodosum_M_contig9638.3.1 ID=mRNA_A-nodosum_M_contig9638.3.1|Name=mRNA_A-nodosum_M_contig9638.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:7340..8044+ (Ascophyllum nodosum dioecious)
ATGACCTGTACTGGGCTCTGGGAGACGGGGGTCCGCAAGAGGACCCGAAT
GACCACGGCCAGCGCACGGATGTCCTCTTTGGGACCGTGGTACGAATTTC
TGCACCCTCGAAGGGCTCGGGCTACGAAGTACCAAGTGGCAACTTCCCGG
ACGCAGAATTGCCCGAGATCTGCGCCAATGGTT
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