mRNA_A-nodosum_M_contig9627.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9627.1.1
Unique NamemRNA_A-nodosum_M_contig9627.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9627.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9627contigA-nodosum_M_contig9627:9756..10727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size671
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870478.3354852-UTR-A-nodosum_M_contig9627:9755..98281680870478.3354852-UTR-A-nodosum_M_contig9627:9755..9828Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9627 9756..9828 +
1680870478.3594508-UTR-A-nodosum_M_contig9627:10248..103991680870478.3594508-UTR-A-nodosum_M_contig9627:10248..10399Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9627 10249..10399 +
1680870478.3688154-UTR-A-nodosum_M_contig9627:10700..107271680870478.3688154-UTR-A-nodosum_M_contig9627:10700..10727Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9627 10701..10727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870478.349885-CDS-A-nodosum_M_contig9627:9828..102481680870478.349885-CDS-A-nodosum_M_contig9627:9828..10248Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9627 9829..10248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9627.1.1prot_A-nodosum_M_contig9627.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9627 9829..10248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9627.1.1

>prot_A-nodosum_M_contig9627.1.1 ID=prot_A-nodosum_M_contig9627.1.1|Name=mRNA_A-nodosum_M_contig9627.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=140bp
MAEVINMKCVAESRGKRPSFGVAGTKTAEDCTQLAPDNMTVVISRKQCRT
ECCSKHPSFGGAGTKSAEYYPQRSLFDVDGTSKAEYCEQHTRMERGVEGY
KGREIGNASPRGAKQNNARPFPAQASPPSGDRRASRKRE*
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mRNA from alignment at A-nodosum_M_contig9627:9756..10727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9627.1.1 ID=mRNA_A-nodosum_M_contig9627.1.1|Name=mRNA_A-nodosum_M_contig9627.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at A-nodosum_M_contig9627:9756..10727+ (Ascophyllum nodosum dioecious)
CGGGAAGAGGTCATCGTTCGGAGTGGCAGGTTCGAAAACCGCGGAGTACT
GCGCACAGTACGCACCGGATGGGATGGCTGAAGTCATAAACATGAAGTGC
GTGGCCGAAAGCCGCGGCAAGAGGCCGTCGTTCGGAGTGGCAGGTACGAA
AACCGCAGAGGACTGCACACAGCTCGCACCAGACAACATGACCGTCGTCA
TAAGCAGAAAGCAGTGCAGAACCGAATGTTGCAGCAAGCATCCGTCGTTC
GGAGGAGCAGGTACGAAATCGGCGGAGTATTATCCACAGCGTTCGTTATT
TGATGTCGATGGGACAAGTAAGGCGGAGTACTGTGAACAGCACACCAGGA
TGGAACGCGGTGTCGAAGGATACAAGGGGAGAGAGATTGGTAACGCAAGT
CCGCGTGGCGCAAAACAAAACAATGCTCGTCCTTTTCCGGCCCAAGCAAG
CCCTCCGTCGGGCGATCGCCGGGCCTCTCGTAAGCGTGAATGACACCTAG
ACATTACGTCTACAGCTTTGAAGCGAGCTGTCGCACGAGAGTCGGCTGGA
GAAGCGGCCACTATGCCGGAGGTCGAGGAACAGAAATATCCCGTGAGGCG
AGATTCTCCTGTGAAGACGGAGGTGCAGCTCTCCTTGTAGTCAGGTACAC
TACACGTGACCGCAAGCCTATCTTTTTTAATATCAGTTTGAATACTGTTG
TTTCTACGATTCCAGCGACCGGAGCTCACTCGTTGGCTTGTTCTTTTGCT
TGGATGAGATATGTCCACTGTCTCGTGTATAGATCTCGCGTTTTGTTTCA
CCGCAAGGCTGTGAGTTCAGCTTAAGGGTCTCAGTTTCACTTAGACCCTC
AAGACCATGCAGCTGCAGCCATTCCTCAACGAAACCCACCACTCGTGCTT
ACGCCCACGACATTGTGCTATCGTTCTCCCGTCTTTTGAACTCAGGTGCT
GTGATCAAGAGCGGTGGAACTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9627:9756..10727+

>mRNA_A-nodosum_M_contig9627.1.1 ID=mRNA_A-nodosum_M_contig9627.1.1|Name=mRNA_A-nodosum_M_contig9627.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at A-nodosum_M_contig9627:9756..10727+ (Ascophyllum nodosum dioecious)
ATGGCTGAAGTCATAAACATGAAGTGCGTGGCCGAAAGCCGCGGCAAGAG
GCCGTCGTTCGGAGTGGCAGGTACGAAAACCGCAGAGGACTGCACACAGC
TCGCACCAGACAACATGACCGTCGTCATAAGCAGAAAGCAGTGCAGAACC
GAATGTTGCAGCAAGCATCCGTCGTTCGGAGGAGCAGGTACGAAATCGGC
GGAGTATTATCCACAGCGTTCGTTATTTGATGTCGATGGGACAAGTAAGG
CGGAGTACTGTGAACAGCACACCAGGATGGAACGCGGTGTCGAAGGATAC
AAGGGGAGAGAGATTGGTAACGCAAGTCCGCGTGGCGCAAAACAAAACAA
TGCTCGTCCTTTTCCGGCCCAAGCAAGCCCTCCGTCGGGCGATCGCCGGG
CCTCTCGTAAGCGTGAATGA
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