mRNA_A-nodosum_M_contig9615.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9615.1.1
Unique NamemRNA_A-nodosum_M_contig9615.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.470e-43
Identity = 79/136 (58.09%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKYFASLF 408
            +D AFTRMF +  P  +P +TY LFT+RD  TV ASFN+P P S++LQ + GMS+  AD TAQ+ACPA+VQ LSTPL+L+G+DLYNNP ST   R  F+  +Y S++  R+ R GPAFGIGGVGNTAFRK   + F
Sbjct:  143 KDRAFTRMFGSSAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLRARF 277          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A8H7S7R9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7R9_9FUNG)

HSP 1 Score: 147 bits (372), Expect = 1.140e-38
Identity = 71/131 (54.20%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKY 393
            +D  FTRMF     R +P  TY+ F  RD MTVAASFN P+  + +LQE + M ++N+ VTAQLACPA +Q +STP++LLG+DLYN PN+T   R   I +EY  + + RV R GPAFGIGGVGNT FR +
Sbjct:  124 KDRTFTRMFGVTTTRALPKFTYLCFAARDSMTVAASFNAPTYFASWLQENYSMDQRNSKVTAQLACPALIQFISTPIHLLGLDLYNRPNATSNQRVGLIRKEYFKSALARVGRIGPAFGIGGVGNTYFRGF 254          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A261XX22_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XX22_9FUNG)

HSP 1 Score: 138 bits (348), Expect = 1.860e-35
Identity = 70/130 (53.85%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRK 390
            +D AFTRMF TV     P  +Y LF  RD +TVAASFN P   S YLQ+    ++  AD+ AQL CPA VQ +STPL+LLG+DLYN  N  +  RA  I REY  + + R++R GPAFGIGGVGNT  R 
Sbjct:   91 KDRAFTRMFGTVASHSFPLPSYALFAARDSLTVAASFNAPQLVSHYLQKHNISTKHTADIVAQLGCPALVQFVSTPLHLLGLDLYNRSNMKLSDRAGLIRREYLKSTLARIARIGPAFGIGGVGNTLLRS 220          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A8H7U8D9_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U8D9_MORIS)

HSP 1 Score: 138 bits (348), Expect = 6.410e-35
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQ-ERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKY 393
            +D AFTRMF TV  +P+P  +Y+LF  RD +T+ +SFN P   SKY+Q E    S K +D  AQLACPA +Q +STPL+LLG+DLYNN NS+   R   I REY  +++ RV+R  PAFGIGGVGN   R Y
Sbjct:  140 KDRAFTRMFGTVASKPLPLFSYLLFASRDSLTILSSFNAPPIVSKYIQTEGILNSSKMSDTIAQLACPAVMQFISTPLHLLGLDLYNNSNSSSGQRLSLIRREYVKSVLARVARIAPAFGIGGVGNNYVRSY 271          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.180e-34
Identity = 68/132 (51.52%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKYF 396
            +D AF RMF  + P   P A+  LF VRD MT AASFN P   +K +++   M + NA   AQL CPA+VQ +STPL+LLG+DLYNN   TM   A  + REY  +++ RV R GPAFG+GGVGN  FR  F
Sbjct:  127 KDRAFARMFGVIAPAAFPLASIGLFAVRDSMTCAASFNAPKVLAKKIEDNKLMDKSNAGTFAQLICPAAVQFISTPLHLLGLDLYNNKGHTMTQHASLVRREYVKSVLARVGRIGPAFGVGGVGNAYFRNIF 258          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.610e-34
Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKYFASLF 408
            +D AF RMF  + P   P A+  LF VRD +TVAASFN P   +K L++   M    A   AQL CPA+VQ +STPL+LLG+DLYNN   +   RA F+ REY  ++  R+ R GPAFGIGGVGNT FR    + F
Sbjct:  126 KDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLRTTF 261          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A433PI02_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI02_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 3.990e-34
Identity = 71/131 (54.20%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGM--SEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFR 387
            +D AFTRMF     RP+P ATY LF  RD +TVAASFN P   S  L  R+G    +++ADV AQLACPA+VQ LSTP++LLG+DLYN P  +   R   + REY  + + R++R GPAFGIGG+GN  FR
Sbjct:  151 KDRAFTRMFGLTAARPLPLATYGLFASRDALTVAASFNAPEVVSATLL-RYGAVWDKRSADVVAQLACPAAVQFLSTPVHLLGLDLYNRPGVSAGQRITLVGREYFKSAIARIARIGPAFGIGGIGNAGFR 280          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A8H7PPD2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PPD2_9FUNG)

HSP 1 Score: 136 bits (342), Expect = 4.690e-34
Identity = 70/132 (53.03%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQ-ERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRKY 393
            +D AFTRMF TV  +P+P  +Y+LF  RD +T+AASFN P   S+++Q E    S K +D  +Q+ACPA +Q+LSTPL+LLG+DLYNN +ST   R   I REY  +++ RV R  PAFGIGGVGN   R Y
Sbjct:  139 KDRAFTRMFGTVATKPLPALSYLLFAARDSLTIAASFNAPPIVSQWIQTEGILNSTKASDTLSQIACPALMQVLSTPLHLLGLDLYNNSSSTTGQRFSLIRREYVKSVLARVGRIAPAFGIGGVGNNYVRSY 270          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: A0A0L0FIC5_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIC5_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.000e-33
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRK 390
            +D AFTRMF T+ P  +P  +Y LF VRD  T+ ASF++P   + ++ + +G   K A   AQL CP +VQL+STP++LLG+DLYNN  +T   RA F+ REY  +   R+SR  PAFGIGG+ N  FR+
Sbjct:  132 KDRAFTRMFGTIAPTSLPIGSYGLFAVRDMATIGASFSLPVKVADHMHDEYGYDRKRALFAAQLLCPMAVQLVSTPMHLLGLDLYNNKTATTSQRASFVGREYLKSTAARISRIAPAFGIGGISNRHFRE 261          
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP)

HSP 1 Score: 134 bits (338), Expect = 1.270e-33
Identity = 67/130 (51.54%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    1 QDLAFTRMFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAMVLRVSRTGPAFGIGGVGNTAFRK 390
            +D AF RMF  + P   P  +  LF VRD MT  ASFN P   +K +++   M + NA   AQL CPA+VQ LSTPL+L+G+DLYNN    M  R  F+ REY  ++  RV R GPAFGIGGVGNT FR 
Sbjct:  128 KDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDNGLMEKGNASTFAQLVCPAAVQFLSTPLHLMGLDLYNNKGHAMAQRVSFVQREYVKSVFARVGRIGPAFGIGGVGNTYFRN 257          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9615.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5G8_9STRA1.470e-4358.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8H7S7R9_9FUNG1.140e-3854.20Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A261XX22_9FUNG1.860e-3553.85Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8H7U8D9_MORIS6.410e-3553.79Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A3M6VQY3_9STRA1.180e-3451.52Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662XCZ4_9STRA1.610e-3450.74Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A433PI02_9FUNG3.990e-3454.20Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A8H7PPD2_9FUNG4.690e-3453.03Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A0L0FIC5_9EUKA1.000e-3348.46Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
G4ZUB7_PHYSP1.270e-3351.54Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9615contigA-nodosum_M_contig9615:13218..14703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000018360
Model size1075
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.09e-35
EggNOG OGs28PN9@1|root,2QWAD@2759|Eukaryota,1MEHD@121069|Pythiales
DescriptionPc13g06010 protein. Source PGD
Cds size396
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870476.7219646-UTR-A-nodosum_M_contig9615:13217..138751680870476.7219646-UTR-A-nodosum_M_contig9615:13217..13875Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9615 13218..13875 -
1680870476.7619662-UTR-A-nodosum_M_contig9615:14682..147031680870476.7619662-UTR-A-nodosum_M_contig9615:14682..14703Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9615 14683..14703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870476.7346709-CDS-A-nodosum_M_contig9615:13875..141031680870476.7346709-CDS-A-nodosum_M_contig9615:13875..14103Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9615 13876..14103 -
1680870476.7484462-CDS-A-nodosum_M_contig9615:14514..146821680870476.7484462-CDS-A-nodosum_M_contig9615:14514..14682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9615 14515..14682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9615.1.1prot_A-nodosum_M_contig9615.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9615 13876..14682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9615.1.1

>prot_A-nodosum_M_contig9615.1.1 ID=prot_A-nodosum_M_contig9615.1.1|Name=mRNA_A-nodosum_M_contig9615.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MFATVKPRPMPFATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKN
ADVTAQLACPASVQLLSTPLNLLGMDLYNNPNSTMMARAKFIAREYNSAM
VLRVSRTGPAFGIGGVGNTAFRKYFASLFTS*
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mRNA from alignment at A-nodosum_M_contig9615:13218..14703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9615.1.1 ID=mRNA_A-nodosum_M_contig9615.1.1|Name=mRNA_A-nodosum_M_contig9615.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1486bp|location=Sequence derived from alignment at A-nodosum_M_contig9615:13218..14703- (Ascophyllum nodosum dioecious)
CAGGACCTCGCGTTCACGCGTATGTTCGCAACAGTCAAGCCGAGGCCGAT GCCATTCGCGACCTATGTCCTGTTCACGGTCCGTGACGGTATGACCGTTG CAGCGTCGTTCAACATGCCTAGTCCGGCGTCCAAGTACCTGCAGGAGCGG TTTGGAATGTCGGAGAAGAACGCTGACGTCACCGCACAGGTATGTACGGC TACGGGATTTAAGGGCCTTCAAAAATGTTGATTGTGTTAGGCGGTTTAGC ACTATGTCCAATTGGTGGGAGATCAGGCGACGTAGACGGGTGGAGATTAC ATCGAGCAATCAGTGATTTGCAGAGGGTGCGATGATGAGAACACTCGCAC TGGCGTCTTTTGTTGACCCGGGCTCGATCCTAGATGATGACAAGCTGCCC ACGGCCAAACATTCCCTCTCAAGTGATGATGGTGGCTCTTTATTATATTA TGATATCACGCCAAGAACATTCTTTCTGCCAGGTCGGCCTGTTTGACGGT AACCGTGCCGCGTGATGTTAGACTATGCCTTCACGATATCCTTCCCCCCT TCGCCCACCGCCCCCGACCCCGTTTCGGACGTGTGCCCACCGATACGCAG CTTGCATGCCCGGCCAGCGTCCAGCTTCTGTCGACTCCCCTGAATCTACT CGGGATGGACCTGTACAACAACCCGAACAGCACCATGATGGCCCGCGCGA AGTTCATCGCTAGGGAGTACAACTCGGCCATGGTTTTGCGAGTCAGTCGA ACCGGCCCCGCTTTCGGGATCGGAGGTGTGGGAAACACGGCGTTCCGAAA ATACTTCGCCTCCTTGTTCACCTCTTAGGGCTTTGGTTACGGCCGTGGGC GGTGCGGTGCTTCGAAGGAGGAAAGGTTGGGGGGGGGTGTCAGCGCGCTG ATGTAGATGTGATGGAGGAAGCGTTTGGATGGCCTGGGGAGTAGATCACC TGGTGAGGAGGTAGTTGTACAGTTATGAGCAAGTGTGAAAGGCTACTTGT TTGGAAACAGACGTGAGTACATCTCTCCAGCAGATCGGGATTTTAAAACA TATGAAATTGTGTCCACGCGTGGAGCAGCTTCAAACATTGACCATAGTAA AATCGTCGTGTTCTGTATACAGCATGTTCTTCGTGTGCGACCCGAATGGT TGAAGCGAGGGTTTACCCGTACGTGATATTAGCTACATAGGGGCGAGAGT TTATTCGGGTCTTCAACGTTTTGGTGAACATCAGACAGATCGATCGTAGG ACAATTGCTGCTTTTTCAATCCCGTGAGCTAGAAAAACGAAGTAAAAGCT AGGCTATATTCTCTTAAACTACCGTGGCAAGGATTTGAGTAGAGGGGGAA ATGCGACTCCGTTTAACATGATTCTGCCTCCCACTTATTTTGGCTTTGCT TGCCTTTTCTACGATGACTGCGGTGTCGGATATTGGTTTGCTCCTATATA AGCACTTAAGGCCTTCTGGGAGCCGAGGTAATCCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9615:13218..14703-

>mRNA_A-nodosum_M_contig9615.1.1 ID=mRNA_A-nodosum_M_contig9615.1.1|Name=mRNA_A-nodosum_M_contig9615.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig9615:13218..14703- (Ascophyllum nodosum dioecious)
ATGTTCGCAACAGTCAAGCCGAGGCCGATGCCATTCGCGACCTATGTCCT
GTTCACGGTCCGTGACGGTATGACCGTTGCAGCGTCGTTCAACATGCCTA
GTCCGGCGTCCAAGTACCTGCAGGAGCGGTTTGGAATGTCGGAGAAGAAC
GCTGACGTCACCGCACAGCTTGCATGCCCGGCCAGCGTCCAGCTTCTGTC
GACTCCCCTGAATCTACTCGGGATGGACCTGTACAACAACCCGAACAGCA
CCATGATGGCCCGCGCGAAGTTCATCGCTAGGGAGTACAACTCGGCCATG
GTTTTGCGAGTCAGTCGAACCGGCCCCGCTTTCGGGATCGGAGGTGTGGG
AAACACGGCGTTCCGAAAATACTTCGCCTCCTTGTTCACCTCTTAG
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