mRNA_A-nodosum_M_contig961.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig961.1.1
Unique NamemRNA_A-nodosum_M_contig961.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 8.540e-22
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 MYKYK-ESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADGFKGESIHLRWRSSIE 198
            +YK+K +    HLV++GP GFQ+C+CLQLLR GL CRH +A LVT LKR+D FKG+SIH RWRSS+E
Sbjct:  438 LYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVE 504
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.320e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   10 YKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADGFKGESIHLRWR 186
            YK     HLVVIGP+GFQ+C+CLQL+R GL CRH +A LVTEL RA  FKGE IH RWR
Sbjct: 1267 YKRRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWR 1325
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.860e-17
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    4 YKY----KESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADGFKGESIHLRWRSSI 195
            YKY    +    SH+VV+GP GFQ+C+CL+L+RCGL C H  A LVT L RA  F G SIH RWR S+
Sbjct:  484 YKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSV 551
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.870e-17
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    4 YKY----KESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADGFKGESIHLRWRSSI 195
            YKY    +    SH+VV+GP GFQ+C+CL+L+RCGL C H  A LVT L RA  F G SIH RWR S+
Sbjct:  830 YKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSV 897
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.370e-14
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADGFKGESIHLRWR 186
            YKY+    SHLVV+GP+ FQMC+CLQ++R G  CRH +A LV    R   F G SIH RWR
Sbjct:   92 YKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWR 151
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.900e-12
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELK-RADG------FKGESIHLRWRSSIEG 201
            YK   +   H+VV GPNGF +CSCL+LLR GL CRH  A LV  L  R  G      F G S+H RWR S++G
Sbjct:  338 YKLTPARPGHVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLVRFLGCRFKGILLDHRFDGNSLHARWRQSLDG 410
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.690e-11
Identity = 34/73 (46.58%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADG-------FKGESIHLRWRSSIEG 201
            YK   S   H+VV+GP GF +CSCL+ LR GL CRH  A LV  +    G       F G S+H RWR S +G
Sbjct:  295 YKLTPSRPGHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQSPDG 367
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.090e-10
Identity = 33/75 (44.00%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVT---------ELKRADGFKGESIHLRWRSSIEG 201
            YK+  +  SHLVV G + F +CSCLQLLRCGL CR   A LV          E+     F G  +H RWR   +G
Sbjct:  540 YKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRWRRRKDG 614
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.850e-10
Identity = 33/73 (45.21%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADG-------FKGESIHLRWRSSIEG 201
            YK   S   H+VV GP GF +CSCL+L+R GL CRH  A L   +    G       F G S+H RWR S +G
Sbjct:  784 YKLTPSRPGHVVVSGPGGFYLCSCLKLMRHGLPCRHYFAVLFRFVGGKFGGVLLNHEFDGNSVHTRWRQSPDG 856
[Close]
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.860e-10
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    4 YKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRADG---------FKGESIHLRWRSSIEG 201
            Y    +  SHLVV GP+ F +CSCLQLLR GL CRH  A LV  + R            FKG  +H RWR   +G
Sbjct: 1173 YMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDG 1247
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig961.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FLF6_ECTSI8.540e-2264.18Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE8.320e-1967.80SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEJ0_9PHAE1.860e-1755.88SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.870e-1755.88SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE2.370e-1455.74SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JY17_9PHAE1.900e-1250.68SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5L2H3_9PHAE1.690e-1146.58SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB76_9PHAE2.090e-1044.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZB4_9PHAE2.850e-1045.21SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE2.860e-1045.33SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig961contigA-nodosum_M_contig961:2740..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size205
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-22
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870476.6682937-CDS-A-nodosum_M_contig961:2739..29431680870476.6682937-CDS-A-nodosum_M_contig961:2739..2943Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig961 2740..2943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig961.1.1prot_A-nodosum_M_contig961.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig961 2740..2943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig961.1.1

>prot_A-nodosum_M_contig961.1.1 ID=prot_A-nodosum_M_contig961.1.1|Name=mRNA_A-nodosum_M_contig961.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
MYKYKESNASHLVVIGPNGFQMCSCLQLLRCGLSCRHTVATLVTELKRAD
GFKGESIHLRWRSSIEGV
back to top

mRNA from alignment at A-nodosum_M_contig961:2740..2943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig961.1.1 ID=mRNA_A-nodosum_M_contig961.1.1|Name=mRNA_A-nodosum_M_contig961.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig961:2740..2943- (Ascophyllum nodosum dioecious)
ATGTACAAATACAAAGAGTCGAATGCCAGCCATCTTGTTGTCATCGGACC
TAATGGTTTCCAAATGTGTAGCTGCTTGCAGCTTTTGAGGTGCGGGCTAT
CGTGCAGGCACACAGTAGCAACACTCGTAACCGAGCTGAAACGGGCCGAT
GGATTTAAAGGGGAGTCCATTCACCTCCGGTGGCGATCTTCGATAGAGGG
TGTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig961:2740..2943-

>mRNA_A-nodosum_M_contig961.1.1 ID=mRNA_A-nodosum_M_contig961.1.1|Name=mRNA_A-nodosum_M_contig961.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig961:2740..2943- (Ascophyllum nodosum dioecious)
ATGTACAAATACAAAGAGTCGAATGCCAGCCATCTTGTTGTCATCGGACC
TAATGGTTTCCAAATGTGTAGCTGCTTGCAGCTTTTGAGGTGCGGGCTAT
CGTGCAGGCACACAGTAGCAACACTCGTAACCGAGCTGAAACGGGCCGAT
GGATTTAAAGGGGAGTCCATTCACCTCCGGTGGCGATCTTCGATAGAGGG
TGTT
back to top