mRNA_A-nodosum_M_contig96.45.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig96.45.1
Unique NamemRNA_A-nodosum_M_contig96.45.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: D8LFF7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF7_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.240e-78
Identity = 115/136 (84.56%), Postives = 123/136 (90.44%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEVQGPSAPRAAEL 408
            EGKAFL  NK KEGV+ET+SGLQYKV+KSG   GKTPL  TKCLCHYRG TI G+EFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGD +RS LITPGAVL+FELELIEVQGP+AP +AEL
Sbjct:   25 EGKAFLAANKDKEGVVETASGLQYKVLKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAPVSAEL 160          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: R1ENV3_EMIHU (Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ENV3_EMIHU)

HSP 1 Score: 195 bits (496), Expect = 7.240e-62
Identity = 91/134 (67.91%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEVQGPSAPRAA 402
            EG A+L+ENK K GV+   SGLQYKV+K  P   K+PL  T C CHYRG  I G EFDSS+KRG+PT FAPNQVIKGWTEAMQ+M EGD WELY+PSELAYGD+QR   ITPGAVL+FE+E++EV+G S P+AA
Sbjct:   16 EGLAWLDENKNKAGVVVLPSGLQYKVLKEAPAGAKSPLVGTPCSCHYRGTLIDGTEFDSSYKRGQPTTFAPNQVIKGWTEAMQLMGEGDKWELYVPSELAYGDRQRGQHITPGAVLVFEIEILEVKGDSKPKAA 149          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A0A835YXV4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV4_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.870e-59
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            EG  FL  NK KEGV+E  SGLQYKV+ SG   G  P  +T C CHY+G TIKGDEFDSSFKRG+P  FAPNQVIKGWTEAMQ+M EGDHWEL+IPSELAYGD + +DLITPGAVL+FEL++++V
Sbjct:   27 EGLDFLAANKAKEGVVELPSGLQYKVVASGDPKGPKPGPSTPCECHYKGTTIKGDEFDSSFKRGRPAVFAPNQVIKGWTEAMQLMHEGDHWELFIPSELAYGDARLNDLITPGAVLVFELQMLKV 151          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A0A7S3WX35_9SPIT (Peptidylprolyl isomerase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WX35_9SPIT)

HSP 1 Score: 187 bits (475), Expect = 1.620e-58
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEVQGPSAPR 396
            +G A+L EN  KEGV+   SGLQYKVI   P   K+PL  T C CHYRG  I G EFDSS+KRG+PT FAPNQV+KGWTEAMQ+M EGD WELY+PSELAYGD+QR   ITPGAVLIFELE++EV+G S  +
Sbjct:   27 DGLAWLAENAKKEGVVTLPSGLQYKVITEAPAGAKSPLANTPCSCHYRGTLIDGTEFDSSYKRGQPTTFAPNQVVKGWTEAMQLMGEGDKWELYLPSELAYGDRQRGKFITPGAVLIFELEMLEVKGESKAK 158          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A0A090N2Y7_OSTTA (Peptidylprolyl isomerase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N2Y7_OSTTA)

HSP 1 Score: 179 bits (455), Expect = 1.790e-55
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            +G A+LE NK KEGV   +SGLQY+V+KSGP DG +P K+T+C CHY G+TI+G+EFDSS+KRG+PT FAPNQVI GWTEAMQ+MKEGD WEL IPSELAYG    + LI P +VL+F++EL++V
Sbjct:   35 DGLAYLEANKLKEGVTTLASGLQYRVLKSGPADGPSPSKSTRCKCHYSGRTIEGEEFDSSYKRGEPTTFAPNQVISGWTEAMQLMKEGDKWELVIPSELAYGRSSPTPLIKPDSVLVFDMELVKV 159          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A4RUM4_OSTLU (Peptidylprolyl isomerase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUM4_OSTLU)

HSP 1 Score: 179 bits (454), Expect = 2.460e-55
Identity = 84/125 (67.20%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            +G AFL  NK K GV+E  SGLQY+V+KSGPE G +P K+T C CHY GK I+G+EFDSS+KRG+PT FAPNQVI GWTEAMQ+MKEGD WEL IPSELAYG    + LI P +VLIFE+EL++V
Sbjct:   34 DGAAFLAANKLKPGVVELPSGLQYRVLKSGPEGGPSPSKSTPCSCHYSGKNIQGEEFDSSYKRGQPTTFAPNQVISGWTEAMQLMKEGDKWELVIPSELAYGKSSPTPLIKPDSVLIFEMELVKV 158          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: C1DZP4_MICCC (Peptidylprolyl isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZP4_MICCC)

HSP 1 Score: 177 bits (450), Expect = 7.990e-55
Identity = 83/125 (66.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            EG A+L+ NK K+GVIE  SGLQY+V+  GP  G +P  +T+C CHYRG TI G EFDSS+KRG+PT FAPNQVI GWTEAMQ+MKEGD WEL IPSE+AYGD+Q    ITPGAVL+F LE+++V
Sbjct:   27 EGVAYLQANKLKDGVIELPSGLQYRVLVEGPAGGPSPGPSTRCACHYRGTTIDGKEFDSSYKRGQPTEFAPNQVIAGWTEAMQLMKEGDKWELVIPSEIAYGDRQMGPDITPGAVLVFTLEIVKV 151          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: K8F319_9CHLO (Peptidylprolyl isomerase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F319_9CHLO)

HSP 1 Score: 175 bits (444), Expect = 1.530e-53
Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    4 GKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTI---------------KGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            GKAFL EN  KEGV+   SGLQY+V+KSGP+ GK P   T CLCHYRG TI               +G+EFDSS+ RG+PT FAPNQVIKGWTEAMQ+M EGD WEL IPSELAYGD+     ITPG+VL+FE+E+++V
Sbjct:   40 GKAFLTENALKEGVVSLPSGLQYRVLKSGPKGGKKPKVNTPCLCHYRGTTIEVRIYDFFAGTARVNRGEEFDSSYNRGEPTKFAPNQVIKGWTEAMQLMSEGDKWELVIPSELAYGDRAMGPQITPGSVLVFEMEIVKV 178          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A0A7S0SJ29_9CHLO (Peptidylprolyl isomerase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ29_9CHLO)

HSP 1 Score: 174 bits (441), Expect = 3.100e-53
Identity = 82/124 (66.13%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    4 GKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEV 375
            GKA+LE NK KEGV+ET SGLQY+V+ +G E G +P   T+C CHYRG TI G EFDSS+ RG+PT FAPNQVI GWTEAMQ+M EG  WEL IPSE+AYGD+Q    ITPGAVL+F LE+++V
Sbjct:   44 GKAYLEANKLKEGVVETKSGLQYRVMVAGKEGGPSPKAGTRCSCHYRGTTIDGKEFDSSYSRGQPTTFAPNQVIAGWTEAMQIMTEGSKWELTIPSEIAYGDRQMGADITPGAVLVFTLEILKV 167          
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Match: A0A0L0GA71_9EUKA (Peptidylprolyl isomerase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GA71_9EUKA)

HSP 1 Score: 173 bits (438), Expect = 5.520e-53
Identity = 84/132 (63.64%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGKTIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDKQRSDLITPGAVLIFELELIEVQGPSAPR 396
            EG  FL ENK KEGVI  +SGLQYKV+ SGP DG +PL  T C CHY GK I G  FDSS+ RG+PT FAPNQVIKGWTEAMQ+M++GD WE+YIPSELAYGD  R  +I  GAVLIF +E+++V     P+
Sbjct:   22 EGLKFLYENKDKEGVITLASGLQYKVLSSGPGDGPSPLVNTPCDCHYEGKFIDGKVFDSSYARGQPTKFAPNQVIKGWTEAMQLMRQGDKWEMYIPSELAYGD--RGGMIPAGAVLIFTMEIVKVHETPKPK 151          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF7_ECTSI1.240e-7884.56Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
R1ENV3_EMIHU7.240e-6267.91Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi... [more]
A0A835YXV4_9STRA3.870e-5970.40Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S3WX35_9SPIT1.620e-5866.67Peptidylprolyl isomerase (Fragment) n=1 Tax=Stromb... [more]
A0A090N2Y7_OSTTA1.790e-5565.60Peptidylprolyl isomerase n=2 Tax=Ostreococcus taur... [more]
A4RUM4_OSTLU2.460e-5567.20Peptidylprolyl isomerase n=1 Tax=Ostreococcus luci... [more]
C1DZP4_MICCC7.990e-5566.40Peptidylprolyl isomerase n=1 Tax=Micromonas commod... [more]
K8F319_9CHLO1.530e-5361.15Peptidylprolyl isomerase n=1 Tax=Bathycoccus prasi... [more]
A0A7S0SJ29_9CHLO3.100e-5366.13Peptidylprolyl isomerase n=1 Tax=Mantoniella antar... [more]
A0A0L0GA71_9EUKA5.520e-5363.64Peptidylprolyl isomerase n=1 Tax=Sphaeroforma arct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig96contigA-nodosum_M_contig96:438286..439927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LFF7
PFAMsFKBP_C,FKBP_N
Model size411
Max annot lvl2759|Eukaryota
KEGG koko:K03773
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.03e-79
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-07_006150.1
EC5.2.1.8
DescriptionFK506 binding
Cds size411
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870470.3278737-CDS-A-nodosum_M_contig96:438285..4384301680870470.3278737-CDS-A-nodosum_M_contig96:438285..438430Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 438286..438430 +
1680870470.3409784-CDS-A-nodosum_M_contig96:439127..4392011680870470.3409784-CDS-A-nodosum_M_contig96:439127..439201Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 439128..439201 +
1680870470.355171-CDS-A-nodosum_M_contig96:439427..4395001680870470.355171-CDS-A-nodosum_M_contig96:439427..439500Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 439428..439500 +
1680870470.3662243-CDS-A-nodosum_M_contig96:439808..4399271680870470.3662243-CDS-A-nodosum_M_contig96:439808..439927Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 439809..439927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig96.45.1prot_A-nodosum_M_contig96.45.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig96 438286..439927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig96.45.1

>prot_A-nodosum_M_contig96.45.1 ID=prot_A-nodosum_M_contig96.45.1|Name=mRNA_A-nodosum_M_contig96.45.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
EGKAFLEENKGKEGVIETSSGLQYKVIKSGPEDGKTPLKTTKCLCHYRGK
TIKGDEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELA
YGDKQRSDLITPGAVLIFELELIEVQGPSAPRAAEL*
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mRNA from alignment at A-nodosum_M_contig96:438286..439927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig96.45.1 ID=mRNA_A-nodosum_M_contig96.45.1|Name=mRNA_A-nodosum_M_contig96.45.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1642bp|location=Sequence derived from alignment at A-nodosum_M_contig96:438286..439927+ (Ascophyllum nodosum dioecious)
GAGGGCAAGGCGTTTTTGGAAGAAAACAAGGGCAAGGAAGGTGTCATCGA AACATCCTCGGGTCTGCAGTACAAGGTGATCAAGTCTGGCCCAGAGGACG GCAAGACTCCCCTCAAGACTACGAAGTGCTTGTGCCACTACAGGGGTACG TTCTCTCCGGATCGCGCGGCGCCATGTGTTCCATGTGTTTGGTGACGCCT AGCCGTCTCCAGTTTTGTTTCCGAGCAATCCAACGATAGGGAGGGGAGGG CAGGGGCGAAAAATATCCTCTATTCCATGGGGGATGTAACCATAAGGGCC CCTCCGAGGGATGAGATAAGTTTGCCTAAACTCATTCCAGCAGGGGTTTG TTAAAATATGTCCCCGGGGGGCTCTTTTGATGACACCCCCCCCCCCCCCC GAAAAAGGAGACTTAATTATGCCCATCCCCTCTATCGTTGGATTGCTTGT CCATAGCATGAGGGGAGGGGGACAAAACCTCAGAAGCCCCTCCCCTAATA GGGCATGACCGAGACATGGCCTTGAGTTGGAGACATCTGCGGTACTAATC GTAAGAAAGCGAGAGCACGAAAACGCCCGTGGCATGGTCGAACGAGCGCA AAACATAGCTTGGGGAAAGTACCGGAAAGTTGTGAGCGGTGCGCATGGTA CCAGACGCAACGAACAAACTCCCAACGCGCCCATCCATTGCGGCCGAGCC AACGCTTTCGATAAGCATGTATGTCTTATGTCACTCTTACAACCTTTTTT GAAAACGTTTTTATTTTATTTTTCATGTCACAACATCCTACTCTGTTTTA TTTGGTGGGGGTGGCGTGGCGGGGGGGTATTGTTATTTTCAGGAAAAACC ATCAAAGGAGACGAGTTTGACAGCTCGTTCAAGCGCGGAAAGCCAACCGC TTTTGCCCCTAACCAGGTACTGTAGACGACAAGCAATCTGTCGTCAATTT TCATTTGTTCACAACACGCACGACCTGTAAAGTTACAATGACTGTATCTC ATAATGCGTATCACGTAGTAGTAGCGATTTGACGCATGTTTCGTCGTAAC AATCGCCTTTGCCTTCGGAGACTAATAGATGTTCTCGCCTATTCCTGCTG GTGTGCGATGCGGTGCGTGGCTCTCGTCCTGGACATGTCCAGGTGATCAA GGGTTGGACTGAGGCCATGCAGATGATGAAAGAGGGCGACCACTGGGAGC TGTACATCCCATCAGGTACAGTGCGGTGCGCGAATCAGATCCCGTGCACG TGGCGGTCGCCGTTAGATTGTCTGTTTTGCTCTCAAAGCAGCGGCGTTTG CCGTCTGAATTTGCCCTCCTCCCCAAGAATGAATAATTTTCCAGGCATAT AACTATTACATTTGTGCAACGCATACTTGTACATTTTCATTTTTTTTCGC AGCCAATCGTGTTCGCGATAATCGTACGCATGAAAGTTTGTGACGCCTCC GTTCAATGAAAATATAGTCTATTGATGTACATTCTTTTTTCCGCCCCTCC ACCTCTCCCATGCACGGCAACAGAATTGGCCTATGGCGACAAACAACGGT CAGATTTGATTACGCCAGGCGCTGTTCTGATCTTCGAGCTAGAGCTCATC GAGGTTCAAGGGCCCTCGGCTCCCCGGGCGGCCGAGCTATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig96:438286..439927+

>mRNA_A-nodosum_M_contig96.45.1 ID=mRNA_A-nodosum_M_contig96.45.1|Name=mRNA_A-nodosum_M_contig96.45.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig96:438286..439927+ (Ascophyllum nodosum dioecious)
GAGGGCAAGGCGTTTTTGGAAGAAAACAAGGGCAAGGAAGGTGTCATCGA
AACATCCTCGGGTCTGCAGTACAAGGTGATCAAGTCTGGCCCAGAGGACG
GCAAGACTCCCCTCAAGACTACGAAGTGCTTGTGCCACTACAGGGGAAAA
ACCATCAAAGGAGACGAGTTTGACAGCTCGTTCAAGCGCGGAAAGCCAAC
CGCTTTTGCCCCTAACCAGGTGATCAAGGGTTGGACTGAGGCCATGCAGA
TGATGAAAGAGGGCGACCACTGGGAGCTGTACATCCCATCAGAATTGGCC
TATGGCGACAAACAACGGTCAGATTTGATTACGCCAGGCGCTGTTCTGAT
CTTCGAGCTAGAGCTCATCGAGGTTCAAGGGCCCTCGGCTCCCCGGGCGG
CCGAGCTATGA
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