mRNA_A-nodosum_M_contig958.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig958.2.1
Unique NamemRNA_A-nodosum_M_contig958.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A7J8Z9J9_9ROSI (Histone H4 n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J8Z9J9_9ROSI)

HSP 1 Score: 202 bits (514), Expect = 1.740e-63
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 3 
Query:   24 LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            LA IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   41 LAFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 147
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BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A7M7M3R6_VARDE (Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A7M7M3R6_VARDE)

HSP 1 Score: 201 bits (510), Expect = 1.930e-63
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 3 
Query:   24 LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            +A +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MAAVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 107
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BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: UPI001659A353 (histone H4-like n=2 Tax=Phocidae TaxID=9709 RepID=UPI001659A353)

HSP 1 Score: 202 bits (514), Expect = 2.050e-63
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 3 
Query:    9 RSIKKLAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            RS  + AV MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   41 RSCVRAAVAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 152
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BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: K7EXR6_PELSI (Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID=K7EXR6_PELSI)

HSP 1 Score: 201 bits (510), Expect = 2.050e-63
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 3 
Query:   18 KKLAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            +K  V+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 RKQRVVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 109
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: UPI001B80B032 (histone H4-like n=1 Tax=Onychostruthus taczanowskii TaxID=356909 RepID=UPI001B80B032)

HSP 1 Score: 201 bits (512), Expect = 3.390e-63
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 3 
Query:   12 SIKKLAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            S  + A+IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   36 SRSRRAIIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 146
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A8J1ITR7_XENTR (Histone H4 n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A8J1ITR7_XENTR)

HSP 1 Score: 200 bits (509), Expect = 4.020e-63
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 3 
Query:   12 SIKKLAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            S  +  VIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 SFVEALVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 119
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A843V931_COLES (Histone H4 n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V931_COLES)

HSP 1 Score: 201 bits (511), Expect = 4.360e-63
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 3 
Query:   24 LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            +AV MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   37 VAVAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 143
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A6P5LF57_PHACI (Histone H4 n=2 Tax=Diprotodontia TaxID=38609 RepID=A0A6P5LF57_PHACI)

HSP 1 Score: 203 bits (517), Expect = 4.830e-63
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 3 
Query:   24 LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  105 LAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 211
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: K7F0E3_PELSI (Histone H4 n=4 Tax=Amniota TaxID=32524 RepID=K7F0E3_PELSI)

HSP 1 Score: 199 bits (507), Expect = 5.510e-63
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 3 
Query:   27 AVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            AV MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 AVTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 107
[Close]
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Match: A0A8J1ITQ4_XENTR (Histone H4 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1ITQ4_XENTR)

HSP 1 Score: 200 bits (508), Expect = 5.710e-63
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 3 
Query:   12 SIKKLAVIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 344
            + K+ +V MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 AFKEASVRMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 119
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig958.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J8Z9J9_9ROSI1.740e-6397.20Histone H4 n=1 Tax=Gossypium laxum TaxID=34288 Rep... [more]
A0A7M7M3R6_VARDE1.930e-6395.33Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
UPI001659A3532.050e-6393.75histone H4-like n=2 Tax=Phocidae TaxID=9709 RepID=... [more]
K7EXR6_PELSI2.050e-6394.50Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
UPI001B80B0323.390e-6393.69histone H4-like n=1 Tax=Onychostruthus taczanowski... [more]
A0A8J1ITR7_XENTR4.020e-6393.69Histone H4 n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A... [more]
A0A843V931_COLES4.360e-6396.26Histone H4 n=1 Tax=Colocasia esculenta TaxID=4460 ... [more]
A0A6P5LF57_PHACI4.830e-6398.13Histone H4 n=2 Tax=Diprotodontia TaxID=38609 RepID... [more]
K7F0E3_PELSI5.510e-6397.17Histone H4 n=4 Tax=Amniota TaxID=32524 RepID=K7F0E... [more]
A0A8J1ITQ4_XENTR5.710e-6392.79Histone H4 n=1 Tax=Xenopus tropicalis TaxID=8364 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig958contigA-nodosum_M_contig958:53130..53752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size623
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.68e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.668579-UTR-A-nodosum_M_contig958:53129..531641680870462.668579-UTR-A-nodosum_M_contig958:53129..53164Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig958 53130..53164 +
1680870462.6918766-UTR-A-nodosum_M_contig958:53476..537521680870462.6918766-UTR-A-nodosum_M_contig958:53476..53752Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig958 53477..53752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.6817956-CDS-A-nodosum_M_contig958:53164..534761680870462.6817956-CDS-A-nodosum_M_contig958:53164..53476Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig958 53165..53476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig958.2.1prot_A-nodosum_M_contig958.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig958 53165..53476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig958.2.1

>prot_A-nodosum_M_contig958.2.1 ID=prot_A-nodosum_M_contig958.2.1|Name=mRNA_A-nodosum_M_contig958.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at A-nodosum_M_contig958:53130..53752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig958.2.1 ID=mRNA_A-nodosum_M_contig958.2.1|Name=mRNA_A-nodosum_M_contig958.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at A-nodosum_M_contig958:53130..53752+ (Ascophyllum nodosum dioecious)
CCAAAAGCCGATCAATCAAGAAGCTAGCTGTTATAATGTCTGGACGTGGA
AAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCAAAACGCCACCGCAAGGT
ACTACGAGACAACATCCAAGGTATCACCAAGCCTGCGATTCGTCGTTTGG
CTCGTCGGGGAGGTGTAAAGCGAATTTCTGGTCTCATCTACGAGGAGACT
CGAGGTGTACTTAAGGTCTTCCTCGAGAATGTCATCCGCGACTCGGTAAC
GTACACGGAGCATGCCCGGCGCAAAACAGTGACAGCAATGGATGTGGTGT
ACGCCCTCAAGCGTCAGGGTCGTACGCTTTACGGTTTCGGTGGGTAAGCC
CTCTACCGCAGGCCGCTCCACAGGACGTCCGCTTTTCACTGTTTGGCAAG
CTGCAAATGAGCATATCCACCCCTGGTGTTTAATTAACACCACCCAGCTG
AGAAAGAAGAGACCGACACCGATGGACGGAGTGTATCTAAATCTTCCATA
AAACAGTATCAAAACACTACTTTCGTACAAAACCTGCCTTCAACTCTAGG
AAACGCCGTCGCTCTGCAGCGCTGCTCTCGTATATGAGGTACGCGAGGTT
ACGCCACAACCCGGCCGACCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig958:53130..53752+

>mRNA_A-nodosum_M_contig958.2.1 ID=mRNA_A-nodosum_M_contig958.2.1|Name=mRNA_A-nodosum_M_contig958.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig958:53130..53752+ (Ascophyllum nodosum dioecious)
ATGTCTGGACGTGGAAAGGGAGGCAAGGGATTGGGAAAAGGCGGCGCAAA
ACGCCACCGCAAGGTACTACGAGACAACATCCAAGGTATCACCAAGCCTG
CGATTCGTCGTTTGGCTCGTCGGGGAGGTGTAAAGCGAATTTCTGGTCTC
ATCTACGAGGAGACTCGAGGTGTACTTAAGGTCTTCCTCGAGAATGTCAT
CCGCGACTCGGTAACGTACACGGAGCATGCCCGGCGCAAAACAGTGACAG
CAATGGATGTGGTGTACGCCCTCAAGCGTCAGGGTCGTACGCTTTACGGT
TTCGGTGGGTAA
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