mRNA_A-nodosum_M_contig9579.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9579.9.1
Unique NamemRNA_A-nodosum_M_contig9579.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.960e-25
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 MAGGLLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAED 249
            MAGGLL+TPE+Y AHV+ L  +L  AW +EEKV ALKVTVQA+KL+G++ +P+FYPALF+ VA L++ FG MVFERI  RAED
Sbjct:  390 MAGGLLVTPEEYVAHVSGLKEDLEVAWFREEKVAALKVTVQAAKLLGDVTVPSFYPALFASVAGLLEAFGVMVFERIRDRAED 472
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: L1IBY7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IBY7_GUITC)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   31 DYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERI 231
            +Y   + ELN EL  AW+KEE+V ALK+ +Q SKL+G+   P FYP+LF +V  ++D FG +VFERI
Sbjct:   83 EYVTKMTELNEELARAWNKEERVKALKMAIQCSKLLGDSSTPQFYPSLFVLVTEILDTFGRLVFERI 149
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: F0Y850_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y850_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 3.200e-14
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   19 LTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAEDPLDG 261
            ++ E+Y  H+  L  +L++AW+ +E+V+ALK+ +QA+KL+G    P FYPA+F + + L+D+FG +V++RI A+A+    G
Sbjct:   20 ISSEEYVQHLERLRAQLKKAWANDERVLALKIAIQAAKLLGETAAPAFYPAMFVLTSELLDLFGKLVYDRIRAKADAAAPG 100
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: A0A7S0E5H0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E5H0_9CRYP)

HSP 1 Score: 75.9 bits (185), Expect = 1.530e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   31 DYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERI 231
            +Y   + ELN EL  AW+KEE+V ALK+ +Q SKL+G+   P FYP+LF +V  ++D FG +VFERI
Sbjct:  180 EYVTKMTELNEELARAWNKEERVKALKMAIQCSKLLGDTSTPQFYPSLFVLVTEILDTFGRLVFERI 246
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: A0A7S4L1S4_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L1S4_GUITH)

HSP 1 Score: 75.5 bits (184), Expect = 2.110e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   31 DYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERI 231
            +Y   + ELN EL  AW+KEE+V ALK+ +Q SKL+G+   P FYP+LF +V  ++D FG +VFERI
Sbjct:  178 EYVTKMTELNEELARAWNKEERVKALKMAIQCSKLLGDSSTPQFYPSLFVLVTEILDTFGRLVFERI 244
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: A0A8C9FE21_PAVCR (VPS35 endosomal protein-sorting factor-like n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9FE21_PAVCR)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   13 LLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAED 249
            L LT +DY   + ELN  L++AWS ++KV ALK+ +Q SKL+ +  +  FYP+ F ++  ++D FG +V+ERIL+   D
Sbjct:  112 LNLTQQDYMNRIEELNQSLKDAWSSDQKVKALKIVIQCSKLLSDTTVIQFYPSKFVLITDILDTFGKLVYERILSMCMD 190
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: UPI001955CCB2 (VPS35 endosomal protein-sorting factor-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955CCB2)

HSP 1 Score: 74.7 bits (182), Expect = 2.830e-13
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   13 LLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAEDP 252
            L L+ +DY   + ELN  L+EAW  ++KV ALK+ +Q SKL+ +  +  FYP+ F ++  ++D FG +V++RILA   DP
Sbjct:  178 LNLSQQDYVNRIEELNQSLKEAWGSDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGGLVYDRILAMCADP 257
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BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: A0A8J6EVZ2_ELECQ (VPS35 endosomal protein-sorting factor-like n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EVZ2_ELECQ)

HSP 1 Score: 75.1 bits (183), Expect = 2.850e-13
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   13 LLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAED 249
            L LT +DY + + ELN  L++AW+ ++KV ALK+ +Q SKL+ +I +  FYP+ F ++  ++D FG +V+ERIL+   D
Sbjct:  148 LNLTQQDYISRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDITVIRFYPSKFVLITDILDTFGKLVYERILSMCVD 226
[Close]
BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: UPI0008543C23 (UPF0505 protein C16orf62-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008543C23)

HSP 1 Score: 74.7 bits (182), Expect = 3.860e-13
Identity = 33/79 (41.77%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   13 LLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAED 249
            L LT +DY + + ELN  L++AW+ ++KV ALK+ +Q SKL+ +  + TFYP+ F ++  ++D FG +V+ERI++   D
Sbjct:  186 LNLTQQDYISRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTTVITFYPSKFVLITDILDTFGKLVYERIMSMCMD 264
[Close]
BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Match: A0A8D2KUS0_VARKO (VPS35 endosomal protein-sorting factor-like n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2KUS0_VARKO)

HSP 1 Score: 74.3 bits (181), Expect = 5.320e-13
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   13 LLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNILMPTFYPALFSMVAALVDVFGAMVFERILARAED 249
            L LT +DYT  + ELN  L++AW+ ++KV ALK+ +Q SKL+ +  +  FYP+ F ++  ++D FG +V+ERIL+   D
Sbjct:  198 LNLTQQDYTNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERILSMCTD 276
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9579.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLV5_ECTSI2.960e-2565.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L1IBY7_GUITC1.710e-1452.24Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
F0Y850_AURAN3.200e-1440.74Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S0E5H0_9CRYP1.530e-1352.24Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4L1S4_GUITH2.110e-1352.24Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A8C9FE21_PAVCR2.150e-1343.04VPS35 endosomal protein-sorting factor-like n=1 Ta... [more]
UPI001955CCB22.830e-1342.50VPS35 endosomal protein-sorting factor-like n=1 Ta... [more]
A0A8J6EVZ2_ELECQ2.850e-1343.04VPS35 endosomal protein-sorting factor-like n=2 Ta... [more]
UPI0008543C233.860e-1341.77UPF0505 protein C16orf62-like n=1 Tax=Nanorana par... [more]
A0A8D2KUS0_VARKO5.320e-1343.04VPS35 endosomal protein-sorting factor-like n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9579contigA-nodosum_M_contig9579:11205..12685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLV5
Preferred nameC16orf62
PFAMsVps35
Model size372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
Exons3
Evalue4.85e-26
EggNOG OGsKOG3682@1|root,KOG3682@2759|Eukaryota
Descriptionprotein transport
Cds size372
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.362585-CDS-A-nodosum_M_contig9579:11204..113271680870462.362585-CDS-A-nodosum_M_contig9579:11204..11327Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9579 11205..11327 +
1680870462.3740132-CDS-A-nodosum_M_contig9579:12022..122181680870462.3740132-CDS-A-nodosum_M_contig9579:12022..12218Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9579 12023..12218 +
1680870462.383959-CDS-A-nodosum_M_contig9579:12632..126851680870462.383959-CDS-A-nodosum_M_contig9579:12632..12685Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9579 12633..12685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9579.9.1prot_A-nodosum_M_contig9579.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9579 11205..12685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9579.9.1

>prot_A-nodosum_M_contig9579.9.1 ID=prot_A-nodosum_M_contig9579.9.1|Name=mRNA_A-nodosum_M_contig9579.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MAGGLLLTPEDYTAHVAELNNELREAWSKEEKVMALKVTVQASKLMGNIL
MPTFYPALFSMVAALVDVFGAMVFERILARAEDPLDGVATGASSASTPSQ
QKQAPTGDTDEAKGGAAPARAPS*
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mRNA from alignment at A-nodosum_M_contig9579:11205..12685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9579.9.1 ID=mRNA_A-nodosum_M_contig9579.9.1|Name=mRNA_A-nodosum_M_contig9579.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1481bp|location=Sequence derived from alignment at A-nodosum_M_contig9579:11205..12685+ (Ascophyllum nodosum dioecious)
ATGGCGGGCGGTCTCCTGTTGACACCCGAGGACTACACGGCGCATGTTGC
GGAGCTGAACAACGAGCTGAGGGAGGCGTGGTCTAAGGAGGAGAAGGTCA
TGGCGCTCAAGGTTACGGTTCAAGTGCTGCTCCTGCTTCTGCTGCTTTTG
ATTTATCAACAACATTTCGAGTAGAAATACGATGTACTACACTGTAGCGT
GAATGTCGTACGACGCTGGTGAGCGCCTACCAGTAGGGCAGGGGTATTCG
CGCCCGTTCCCCCAAAGACAGACACATTTATCACCCTCTTATTCTCATGT
CGAAATTCTTACACGAAACACTGTTTTTTTTTTATCTTTTTGAGGGAGAC
GAGCGGGCGGGGGGGTGATCCTCATCCTGCACGGGGTGCGCCATAGGCAG
CGTAGCGTTCAGATCCCCTTTTTTCCGTTCCCATCATCTATGCTAGAGAA
CCTGTGATAAGGTCACGCACATCGCTCCCCGCTGTTTCCGGTTTCTACTT
TACCTCCGGCGCCCTCCCCGATCCGTCTATCGTACCGTTGGCGCCCCCGT
TGGGTGGGAACAAACACCCAAGCAAAACTTGTAAATAAAATAAAAAGGGA
CGTCTACCCATTCATCAAAAAGATAAGTTAAATAAATCAGTATTTTGTCC
ACAGACCAGCGTCCCTTTTCCAATCTTTTACTTATTACTTGCGGCAGTTC
ACGACCGGACTATGACGAAGCCAACATACTGAACGTTTTCCTGCATCTTG
GGGTTGCGCCGTTGGGAGTAATACGGGGTCGTGCTCTTCGCCCCCCCCCC
CCCTACGTCGTTTCCTAGGCATCGAAGCTGATGGGCAACATATTGATGCC
CACGTTCTACCCCGCCCTGTTCTCCATGGTGGCTGCACTGGTCGACGTCT
TCGGGGCAATGGTTTTCGAGCGAATCCTGGCAAGGGCCGAGGACCCCCTT
GACGGCGTCGCGACGGGGGCTTCGTCCGCCTCGACTCCATCGCAGCAGAA
ACAGGCGCCGACAGGTAGAAAGACGAAAGCCATCGTTGTGTCGAACAGAC
GCTCGTGAGGTTGTACCGTAGTTGTTTTTTTTCCCTTACCATGTAGGCTT
CACGATATGACGACTCTGTTTTTTTATGGAGAATTTTTCCTGTGAGGGTG
GAGAACGAAGGAATACCCGCCCCCCCCTCCCCCCTTATTGGCGTGTTGTG
TTGCCTTTTTTTTGCGTGGAAATCCTCTAGCGTCGCGCTCCCGCGGGCAC
GTGTTAGTATGTGTGTGTGAGGGAGGACGAGGGTGTTCATCATCCGCATC
CCATTCGCATCTTGTGTGATTTTGCCTCCACAGTTTTCGTATGTGAAGGT
GAATGTGTGTCTGCATGTCGTGTCTACGATGTCCCAACCTTCTGCCTCCT
TTTGCACCAACGGACGGACGTGACGCAGGCGACACGGACGAGGCGAAGGG
CGGTGCTGCCCCTGCTAGGGCGCCGTCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9579:11205..12685+

>mRNA_A-nodosum_M_contig9579.9.1 ID=mRNA_A-nodosum_M_contig9579.9.1|Name=mRNA_A-nodosum_M_contig9579.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig9579:11205..12685+ (Ascophyllum nodosum dioecious)
ATGGCGGGCGGTCTCCTGTTGACACCCGAGGACTACACGGCGCATGTTGC
GGAGCTGAACAACGAGCTGAGGGAGGCGTGGTCTAAGGAGGAGAAGGTCA
TGGCGCTCAAGGTTACGGTTCAAGCATCGAAGCTGATGGGCAACATATTG
ATGCCCACGTTCTACCCCGCCCTGTTCTCCATGGTGGCTGCACTGGTCGA
CGTCTTCGGGGCAATGGTTTTCGAGCGAATCCTGGCAAGGGCCGAGGACC
CCCTTGACGGCGTCGCGACGGGGGCTTCGTCCGCCTCGACTCCATCGCAG
CAGAAACAGGCGCCGACAGGCGACACGGACGAGGCGAAGGGCGGTGCTGC
CCCTGCTAGGGCGCCGTCTTGA
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