mRNA_A-nodosum_M_contig957.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig957.6.1
Unique NamemRNA_A-nodosum_M_contig957.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: A0A6H5L132_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L132_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 7.900e-39
Identity = 90/189 (47.62%), Postives = 107/189 (56.61%), Query Frame = 2 
Query:  197 VGDVVERDIDGIWFLSEVLAVRDE--------GRGPRGNWSTNLYDLKYLDDNNVESEVPGDEIRRVFREGASEK--------LVHRHAAKVDRVTTGADGGGCREG-SAEETVDGAANDQEVGQSKLRRTLAPRAPRASVVGPKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLKG 712
            VG+VVERDIDG+WF ++V+AV ++        G G  G      YDL YLDDNN ESEVP ++IR V+  G   K          H            + GGG  +   A + V+  AN +  GQ   +             GPKVTIHSS GTFD  EDGSATAYIINGPETNVAAGSGLRGIRWL+G
Sbjct:   27 VGEVVERDIDGVWFPAKVVAVHEKKDEAVPSGGSGSIGRRRQLAYDLFYLDDNNRESEVPEEDIRVVYDYGTKTKESMLLLLGTEHERGGDSTAARGHSHGGGDSKSLDARQYVEAGANSRSRGQDGGKDGGVHDEDGDGHAGPKVTIHSSLGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRG 215
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: D8LHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.890e-27
Identity = 82/181 (45.30%), Postives = 92/181 (50.83%), Query Frame = 2 
Query:  197 VGDVVERDIDGIWFLSEVLAVRDE----GR-GPRGN----WSTNLYDLKYLDDNNVESEVPGDEIRRVFREGASEKLVHRHAAKVDRVTTGADGGGCREGSAEETVDGAANDQEVGQSKLRRTLAPRAPRASVVGPKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLKG 712
            VG+VVERDIDG+WF ++V+ V ++    GR G  G+    W    YDL YLDDNN ESE  G                              DGG   EG      DG A                        GPKVTIHSS GTFD  EDGSA+AYIINGPETNVAAGSGLRGIRWL+G
Sbjct:   22 VGEVVERDIDGVWFPAQVVGVHEKTYEAGRSGSSGSIGRPWQL-AYDLVYLDDNNRESEGEGK-----------------------------DGGVHDEGD-----DGHA------------------------GPKVTIHSSRGTFDTKEDGSASAYIINGPETNVAAGSGLRGIRWLRG 143
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: A0A835Z3A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.310e-24
Identity = 73/181 (40.33%), Postives = 101/181 (55.80%), Query Frame = 2 
Query:  185 GIIEVGDVVERDIDGIWFLSEVLAVRDEGRGPRGNWSTNLYDLKYLDDNNVESEVPGDEIRRV----FREGASEKLVHRHAAKVDRVTTGADGGGCREGSAEE-TVDGAANDQEVGQSKLRRTLAPRAPRASVVGPKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLKG 712
            G+  VG VVERDID IW+ +EVLAVR++  G  G +   +YD+ YLDD N E +V   ++R +     RE A+       AA+  +          R  S E+ +V+G A+D +             AP+     P VT H+S+   D  +DG A AYIINGP+TN+AAGSGLR +RWL+G
Sbjct:   35 GVFGVGSVVERDIDAIWYPAEVLAVREDACGAAGAY---VYDIAYLDDGNTEHDVAARDLRLLDGAASRELAAAAARRGDAARPQQPPVAIPSALLR--SIEDLSVNGGADDGDA------------APQ-----PTVTYHTSA-AHDNRDDGQAGAYIINGPDTNIAAGSGLRALRWLRG 192
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: A0A6S9KAU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KAU9_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 6.010e-22
Identity = 68/177 (38.42%), Postives = 93/177 (52.54%), Query Frame = 2 
Query:  182 QGIIEVGDVVERDIDGIWFLSEVLAV-RDEGRGPRGNWSTNLYDLKYLDDNNVESEVPGDEIRRVFREGASEKLVHRHAAKVDRVTTGADGGGCREGSAEETVDGAANDQEVGQSKLRRTLAPRAPRASVVGPKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLK 709
            + I +VG+VVERDIDG W+ +++++V +DE       +   +YD++Y+DD NVE  VP DE+R     G  E L    A   D   +       R   A   + GA       + + +R  A          P+V +H  +      +DG ATAYIINGPE NVA GSGLRGIRWLK
Sbjct:   16 RSIWQVGNVVERDIDGEWYAAKIVSVIQDE-------FDEIIYDVEYVDDGNVEHGVPEDELRT----GDHETLEQALAKADDEGNSDNQSKAGRPREAPRPLGGALFPTRGEEEEEKRRQAA---------PRVVVHGLA------QDGEATAYIINGPENNVATGSGLRGIRWLK 166
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: A0A8K1FRW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRW7_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 2.790e-5
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 2 
Query:  305 YDLKYLDDNNVESEVPGDEIRRVFREGASEKLVHRHAAKVDRVTTGADGGGCREGSAEETVDGAANDQEVGQSKLRRTLAPRA----PRASVVGPKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLK 709
            YD++Y +D N E EVP +E+R +      ++   +   ++ R  T                   A  Q+  +  LR +L  +     P  +   P V +H    T  A     A+AYIING E N+AAG+GLRGIRWL+
Sbjct:   64 YDVEYDEDQNCEPEVPVEELRLL------DEQAIKDPNEIPRPQT-------------------ALSQQQQKDLLRDSLLLQTSDYDPNKA---PTVVLHHRGETHAA-----ASAYIINGLENNIAAGNGLRGIRWLR 169
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: W4FSG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSG6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.580e-5
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  575 PKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLK 709
            P V +H+       GE  +A  YIING ETNVAAG+GLRGIRWL+
Sbjct:  115 PTVVVHNK------GEATAANGYIINGIETNVAAGNGLRGIRWLR 153
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BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Match: A0A485KQE5_9STRA (Aste57867_10453 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQE5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.860e-5
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  575 PKVTIHSSSGTFDAGEDGSATAYIINGPETNVAAGSGLRGIRWLK 709
            P V +H+       GE  +A  YIING ETNVAAG+GLRGIRWL+
Sbjct:  125 PTVVVHNK------GEATAANGYIINGLETNVAAGNGLRGIRWLR 163
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig957.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L132_9PHAE7.900e-3947.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB0_ECTSI1.890e-2745.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3A3_9STRA2.310e-2440.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9KAU9_HETAK6.010e-2238.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FRW7_PYTOL2.790e-531.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FSG6_9STRA7.580e-557.78Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KQE5_9STRA8.860e-557.78Aste57867_10453 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig957contigA-nodosum_M_contig957:115486..118717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHB0
PFAMsPAP2
Model size715
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.48e-29
EggNOG OGs2CZYN@1|root,2SC5I@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001230.1
DescriptionPhosphatidic acid phosphatase. Source PGD
Cds size555
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870461.2004755-CDS-A-nodosum_M_contig957:115485..1156451680870461.2004755-CDS-A-nodosum_M_contig957:115485..115645Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig957 115486..115645 -
1680870461.2137902-CDS-A-nodosum_M_contig957:116067..1163751680870461.2137902-CDS-A-nodosum_M_contig957:116067..116375Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig957 116068..116375 -
1680870461.2232993-CDS-A-nodosum_M_contig957:118470..1185571680870461.2232993-CDS-A-nodosum_M_contig957:118470..118557Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig957 118471..118557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870461.2348757-UTR-A-nodosum_M_contig957:118557..1187171680870461.2348757-UTR-A-nodosum_M_contig957:118557..118717Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig957 118558..118717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig957.6.1prot_A-nodosum_M_contig957.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig957 115486..118557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig957.6.1

>prot_A-nodosum_M_contig957.6.1 ID=prot_A-nodosum_M_contig957.6.1|Name=mRNA_A-nodosum_M_contig957.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=185bp
MPTGDRQQGIIEVGDVVERDIDGIWFLSEVLAVRDEGRGPRGNWSTNLYD
LKYLDDNNVESEVPGDEIRRVFREGASEKLVHRHAAKVDRVTTGADGGGC
REGSAEETVDGAANDQEVGQSKLRRTLAPRAPRASVVGPKVTIHSSSGTF
DAGEDGSATAYIINGPETNVAAGSGLRGIRWLKG*
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mRNA from alignment at A-nodosum_M_contig957:115486..118717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig957.6.1 ID=mRNA_A-nodosum_M_contig957.6.1|Name=mRNA_A-nodosum_M_contig957.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3232bp|location=Sequence derived from alignment at A-nodosum_M_contig957:115486..118717- (Ascophyllum nodosum dioecious)
GTATAAGATACTCTGTTCACATTTTATTGTGGAACACCTGCTTCCCCCGG
CTGCAAGGCAAAATGAACTACACGCAGCCGAGAGGTGTTGAGATTTGATC
AGGCCACCACATCGACATCACCGTGGCCTATGAGGCCAGTGCACACCGAC
CACCCCTCATATGCCAACTGGCGATAGGCAGCAAGGCATTATCGAAGTCG
GAGATGTTGTCGAGAGGGATATCGATGGCATATGGTTCCTATCGGAGGTG
TGGCCTACGTGAGGGACGCCCGCGGAAATATCGAAATGTCGATATGTAAT
CGCTGGCCGCAAAACGAAACGAAGATTGTAGAACACGTGATCAGTCGCGA
GGGTCGCTCGTTATCAAATTCTACCATGTATTACGTGCGTGAAATTAGGT
TTTTGCTTTGGAAGCTTCTCATAGATTGCATGTGAAAATAGTGCTGGTTC
TATAGAACTTGCTATTTAATCAAGTAGTGCTCATCGTGGTATCTTGCCAG
CATCCCTAGCTCGAAATATAACAGGGGCGACATCTCCTACTACTTCTGTT
TAGTAGTACGGCAGTGCTGTCGCTAACAGGATTGCCTATATTTTTCCTCA
AAATAACAAGCAAATTAAATATATATATAATAATGTTACACACATAACAA
GCACCAGATTCCGTTGTGCGCAGTGTCGGAACCTAGCCCTTCGCTGATGA
TAGAGAGGAGAGTCGCTAGGGGTTGAAGAAGTTTTAGACGTCTCTCCTCC
AGACAATCATCGCGTAGACAGACACCTACCGTAAGTATAGCAGAAAGCGC
GAGGAGAGTGTGGATACGCAAGAAGACTAAAAATCCAACAAAAGCTCTAA
GGGGTGAAGGATTACTGTATTGCTGAACATAACATCTATCCGATCCGAGA
CCCAATGCAACAAAATTGAGCTGTATCTAGGCCCATCGTGTCTTTTGTCG
CTGTTTTGGTGTCCCCGCATGGCGATTAATGTACGCGTCCATTATAACGG
TGGGTTTCTCCCCTACATGGTACTGTTGACCCTATACTACTACCATCGGG
GAACCCGATTAAATGCCACCAAGAGGTTTTGTCTTGGCAGCCTAATGTTA
TAAAGACTGATTACCGAGTAGTATTTGTCAATAGTTGACTTTTACCCCGT
GTGTGTGTGTGTGTGTGTTTTCTTCCCATCCATTCTGGACATCAAGTTCG
TTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTTT
AATCCACCTTCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGCGAGAAGGA
TTCAGCCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTA
ACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGGTTTTTTAG
TTTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACG
TGTCAGAAGGTTACGAGGTGCCGACTGAGCTACCGGGGTCGACCGGACCC
CGTGGTGTAATGGTAAGCTTATCACATTTAGACTATAGTTCCCACCTAAT
AAACGTTTTGAACAAATTTTCCCCTCTGTCTGGGGGATGGTCAGAAGGCT
TAGATGCTGCGCGTTCAGATTTTTCTTTTAATAGTGGATGTGGGGAAAGA
GAGGCGCATACAAAGTGGTCCATGGTGATACCGGAAAAGCAGCACCCGTT
ACTGTGCCGGTGGACTCTCGGCAGTGAACGCCATCTGTACGCAATTGCAT
AATATAACCTGATGAACTCGAGACTGGCCCAATGGCGGTTGACTGTATAT
TATGTGGACGCCGTGTCATGGAAAGCGGGAGAAATCACGCGAGTAAGCAC
CAACCAATCAGATTCAGCCTGAGTGTGTGTGGAGAATAAGCGGGCTGACG
CGGGACGGGACGACCGGACTTGTCTCGTGAGACCAGATTCTCAGGCGCGA
ACGGGGACTGGGAAATATCATATTCCCTGTTCCGCCGACCACGAGCAGGA
TTGGCAACCAAATCCCGTTGATCCACACTCTTGCTATATGTGTGATCATA
CAGTACAGACTGTATTATGAAGTCTTCTTCTATAGTATTATAGTTATAAT
CTGCTGAAAGCGCCGACTATACAACATATACAAACATACGATAGAACAAG
CTTAGACGCGAACAACCTAGAAGAAATGAACTCTCCACATACATGCGCTA
TCTACCATGGGCGCAGCGTTACAGTTACAGCACGTTATTAGTAGGCGCGA
CCCATCGAAAAAAAGTGACGTGCAAATAAAACAAACAAAATCTACAGTGC
CCCCCGTTCGTCTAACGTTGCCGAAATTCGTTGTATTGCGAGGTTCTGGC
CGTCCGAGACGAAGGGCGAGGGCCACGCGGTAATTGGTCTACCAACTTGT
ACGACCTCAAATACTTGGATGACAACAATGTCGAAAGCGAGGTACCTGGG
GACGAAATTCGACGCGTTTTTAGAGAGGGGGCGAGCGAGAAGCTTGTGCA
TCGACACGCTGCAAAAGTTGATCGTGTCACGACGGGGGCGGACGGTGGGG
GGTGTCGGGAGGGGTCAGCAGAGGAGACAGTGGACGGTGCGGCCAACGAC
CAAGAGGTGGGCCAGAGTAAATTGCGGCGCACGTTAGCTCCTCGCGCACC
GTTCGTGTTGCGTGGATAGGGTGGGACACGAATCATAGCGATCAAGAGCG
TCTATCCTTGATTTCTCGAGTGTGAGGACTTTTCGAGGCTTTTTGATTGT
GTTGTTGTTGATTGTGATGGTGTTAATAAACAACTTTTATAGTTTTTTTT
TTTCCTCAAACCGACCACTTTTCTACATGATAACGTTTGGTGATACACGG
TGGCCAATCCCTGCTAGTGGTCTCGTGAACAGGGAAAATGTCAAATGTGG
CGAATAACGGGAAATTTCTAGCAGTAGCCCCCCCCCGCCCATGCAGCCCT
TTTGGTTGCAGGTCTCCGGGACAAGTTTGCGGCGTTCGCGTACGAAGTAG
GGGTAGCACCTGGGTCTGACAAGCGATCACATTTGCACCTAAACTCTCAA
CGCAGGAGAGCAGGAGATCAAGTCGCGCAAGCGTTGTTGGCCCCAAGGTC
ACGATTCATTCATCCAGCGGCACGTTTGACGCTGGAGAGGACGGCTCCGC
CACAGCATATATCATCAATGGACCTGAGACGAACGTCGCCGCGGGGAGTG
GTCTAAGAGGGATCCGTTGGCTGAAAGGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig957:115486..118717-

>mRNA_A-nodosum_M_contig957.6.1 ID=mRNA_A-nodosum_M_contig957.6.1|Name=mRNA_A-nodosum_M_contig957.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=555bp|location=Sequence derived from alignment at A-nodosum_M_contig957:115486..118717- (Ascophyllum nodosum dioecious)
ATGCCAACTGGCGATAGGCAGCAAGGCATTATCGAAGTCGGAGATGTTGT
CGAGAGGGATATCGATGGCATATGGTTCCTATCGGAGGTTCTGGCCGTCC
GAGACGAAGGGCGAGGGCCACGCGGTAATTGGTCTACCAACTTGTACGAC
CTCAAATACTTGGATGACAACAATGTCGAAAGCGAGGTACCTGGGGACGA
AATTCGACGCGTTTTTAGAGAGGGGGCGAGCGAGAAGCTTGTGCATCGAC
ACGCTGCAAAAGTTGATCGTGTCACGACGGGGGCGGACGGTGGGGGGTGT
CGGGAGGGGTCAGCAGAGGAGACAGTGGACGGTGCGGCCAACGACCAAGA
GGTGGGCCAGAGTAAATTGCGGCGCACGTTAGCTCCTCGCGCACCTCGCG
CAAGCGTTGTTGGCCCCAAGGTCACGATTCATTCATCCAGCGGCACGTTT
GACGCTGGAGAGGACGGCTCCGCCACAGCATATATCATCAATGGACCTGA
GACGAACGTCGCCGCGGGGAGTGGTCTAAGAGGGATCCGTTGGCTGAAAG
GGTGA
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