mRNA_A-nodosum_M_contig9550.3.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: D7G282_ECTSI (3-isopropylmalate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G282_ECTSI) HSP 1 Score: 251 bits (640), Expect = 4.480e-80 Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDSILLAAIGGPKWD NPRELRPETGLLAMR +LGLFANLRPAKVMKEL+DAS+LKPEIVEGVDIMVVRELTGDVYFG PKGIDELP+GERVGYNNMIY EHEVERIA+VAY+VA+KRGKRLCSVDKANVLDV
Sbjct: 113 SDSILLAAIGGPKWDGNPRELRPETGLLAMRSQLGLFANLRPAKVMKELVDASSLKPEIVEGVDIMVVRELTGDVYFGTPKGIDELPSGERVGYNNMIYHEHEVERIAKVAYDVAMKRGKRLCSVDKANVLDV 245
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A835ZK29_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK29_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.710e-72 Identity = 111/133 (83.46%), Postives = 123/133 (92.48%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LL+AIGGPKWD NPRE RPETGLLAMRK LGLFANLRPAKV+++L+DASTLKPEIV+GVDIMVVRELTGDVYFG PKGI+ +GER GYNNMIY EHEVERIARVA++VA KRGKR+CSVDKANVLDV
Sbjct: 109 SDSVLLSAIGGPKWDGNPREQRPETGLLAMRKGLGLFANLRPAKVVRQLLDASTLKPEIVDGVDIMVVRELTGDVYFGTPKGIETTESGERFGYNNMIYYEHEVERIARVAFDVARKRGKRVCSVDKANVLDV 241
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S1G269_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G269_9STRA) HSP 1 Score: 224 bits (570), Expect = 8.920e-71 Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELP-TGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGGPKWD NPRELRPE+GLL MRKE+GLFANLRPAKVM +L+DASTLK EIVEGVD+MVVRELTGDVYFG PKGID P TGERVGYNNMIY E EV RIA+VA +VA+KRGK+LCSVDKANVLDV
Sbjct: 111 SDSVLLACIGGPKWDGNPRELRPESGLLKMRKEMGLFANLRPAKVMSQLVDASTLKREIVEGVDVMVVRELTGDVYFGAPKGIDTDPVTGERVGYNNMIYSESEVRRIAKVAGDVAMKRGKKLCSVDKANVLDV 244
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S2RSG3_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSG3_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.150e-70 Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGGPKWD NPR+ RPETGLLAMRK +GLFANLRPAKV+ +L+DASTLK EIVEGVDIMVVRELTGDVYFGEPKGID L GERVGYNNMIY E E++RIARVAY+V+LKR K+LCS+DKANVLDV
Sbjct: 122 SDSVLLACIGGPKWDGNPRDKRPETGLLAMRKNMGLFANLRPAKVLPQLVDASTLKREIVEGVDIMVVRELTGDVYFGEPKGIDTLEDGERVGYNNMIYKESEIDRIARVAYDVSLKRRKQLCSIDKANVLDV 254
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S1G2F4_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2F4_9STRA) HSP 1 Score: 224 bits (570), Expect = 9.470e-70 Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELP-TGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGGPKWD NPRELRPE+GLL MRKE+GLFANLRPAKVM +L+DASTLK EIVEGVD+MVVRELTGDVYFG PKGID P TGERVGYNNMIY E EV RIA+VA +VA+KRGK+LCSVDKANVLDV
Sbjct: 111 SDSVLLACIGGPKWDGNPRELRPESGLLKMRKEMGLFANLRPAKVMSQLVDASTLKREIVEGVDVMVVRELTGDVYFGAPKGIDTDPVTGERVGYNNMIYSESEVRRIAKVAGDVAMKRGKKLCSVDKANVLDV 244
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7R9W554_9STRA (3-isopropylmalate dehydrogenase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W554_9STRA) HSP 1 Score: 218 bits (555), Expect = 3.070e-69 Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGG KWDNNPRELRPETGLL MRKE+GLFANLRPAKV+ +L+DASTLK EIVEGVD+MVVRELTGDVYFG PKGIDE GERVGYNNMIY E E++RIARVA +VA KRG +LCSVDKANVLDV
Sbjct: 61 SDSVLLACIGGYKWDNNPRELRPETGLLKMRKEMGLFANLRPAKVLSQLVDASTLKREIVEGVDVMVVRELTGDVYFGTPKGIDERD-GERVGYNNMIYSESEIDRIARVAGDVASKRGGKLCSVDKANVLDV 192
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S3Q524_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q524_9STRA) HSP 1 Score: 216 bits (551), Expect = 6.980e-67 Identity = 108/133 (81.20%), Postives = 119/133 (89.47%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGG KWD NPRELRPETGLL MRKE+GLFANLRPAKV+ +L+DASTLK E+VEGVD+MVVRELTGDVYFGEPKGID + GERVGYNNMIY E E+ERIARVA +VA KRG +LCSVDKANVLDV
Sbjct: 106 SDSVLLACIGGYKWDANPRELRPETGLLKMRKEMGLFANLRPAKVIDQLIDASTLKREVVEGVDVMVVRELTGDVYFGEPKGIDVI-NGERVGYNNMIYSESEIERIARVAGDVASKRGGKLCSVDKANVLDV 237
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S0Z0Z5_9CRYP (3-isopropylmalate dehydrogenase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z0Z5_9CRYP) HSP 1 Score: 214 bits (546), Expect = 1.730e-66 Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS LLAAIGGPKWD NPRELRPETGLL MRKELGLFANLRPA V+ +L+DASTLKPE+++GVDIMVVRELTGDVYFG PKGI+E GER G+NNM Y E E+ RIA+VA+++A+KRGK++CSVDKANVLDV
Sbjct: 90 SDSCLLAAIGGPKWDKNPRELRPETGLLKMRKELGLFANLRPATVLDQLVDASTLKPEVIKGVDIMVVRELTGDVYFGAPKGIEERD-GERFGFNNMCYKESEIRRIAKVAFDLAMKRGKKVCSVDKANVLDV 221
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: A0A7S0BHP4_9RHOD (3-isopropylmalate dehydrogenase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHP4_9RHOD) HSP 1 Score: 212 bits (539), Expect = 2.420e-66 Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
+DSILLAAIGGPKWD PRE RPETGLL +RK LGL+ANLRPAK +K+L+DAS+LK E+VEGVDIMVVRELTGDVYFGEPKG+ E GERVGYNNMIY EHEV RI ++AY++++KR K+LCSVDKANVLDV
Sbjct: 14 TDSILLAAIGGPKWDGLPREKRPETGLLGLRKGLGLYANLRPAKSIKQLLDASSLKREVVEGVDIMVVRELTGDVYFGEPKGV-ETKNGERVGYNNMIYYEHEVTRIGKIAYDISMKRTKKLCSVDKANVLDV 145
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Match: B7G1X8_PHATC (3-isopropylmalate dehydrogenase n=2 Tax=Naviculales TaxID=38748 RepID=B7G1X8_PHATC) HSP 1 Score: 214 bits (546), Expect = 4.590e-66 Identity = 105/133 (78.95%), Postives = 120/133 (90.23%), Query Frame = 1
Query: 4 SDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELMDASTLKPEIVEGVDIMVVRELTGDVYFGEPKGIDELPTGERVGYNNMIYMEHEVERIARVAYEVALKRGKRLCSVDKANVLDV 402
SDS+LLA IGG KWD+NPRELRPE+GLL MRKE+GLFANLRPAKV+ +L+DASTLK E+VEGVD+MVVRELTGDVYFG PKGI+ + GERVGYNNMIY E E++RIARVA +VA KRGK+LCSVDKANVLDV
Sbjct: 110 SDSVLLACIGGYKWDSNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIETI-NGERVGYNNMIYSESEIDRIARVAGDVASKRGKKLCSVDKANVLDV 241 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9550.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9550.3.1 >prot_A-nodosum_M_contig9550.3.1 ID=prot_A-nodosum_M_contig9550.3.1|Name=mRNA_A-nodosum_M_contig9550.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp ESDSILLAAIGGPKWDNNPRELRPETGLLAMRKELGLFANLRPAKVMKELback to top mRNA from alignment at A-nodosum_M_contig9550:13558..15842+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9550.3.1 ID=mRNA_A-nodosum_M_contig9550.3.1|Name=mRNA_A-nodosum_M_contig9550.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2285bp|location=Sequence derived from alignment at A-nodosum_M_contig9550:13558..15842+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9550:13558..15842+ >mRNA_A-nodosum_M_contig9550.3.1 ID=mRNA_A-nodosum_M_contig9550.3.1|Name=mRNA_A-nodosum_M_contig9550.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig9550:13558..15842+ (Ascophyllum nodosum dioecious)back to top |