mRNA_A-nodosum_M_contig9540.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9540.2.1
Unique NamemRNA_A-nodosum_M_contig9540.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9540.2.1 vs. uniprot
Match: A0A6H5KTC8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTC8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.690e-15
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  170 EEARLIFQIREAHSKALREAASKLQANGFDRHLRPLKGKV-DVDLAALAAKVVERVVERSEEGFNKLCDRMAVNEK 394
            EEARL+ ++R+AHS AL+ +A KL ++   + +RP++GK+ D D AALAA+VV +V+E+SEE F KLC R+ VNEK
Sbjct:   12 EEARLMVRMRQAHSMALKRSADKLTSHVLLKRVRPIQGKLGDADPAALAAQVVAQVIEKSEESFEKLCQRIRVNEK 87
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9540.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTC8_9PHAE3.690e-1553.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9540contigA-nodosum_M_contig9540:7582..9048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870459.363124-UTR-A-nodosum_M_contig9540:7581..77051680870459.363124-UTR-A-nodosum_M_contig9540:7581..7705Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9540 7582..7705 +
1680870459.4869215-UTR-A-nodosum_M_contig9540:8708..90481680870459.4869215-UTR-A-nodosum_M_contig9540:8708..9048Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9540 8709..9048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870459.378488-CDS-A-nodosum_M_contig9540:7705..77831680870459.378488-CDS-A-nodosum_M_contig9540:7705..7783Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9540 7706..7783 +
1680870459.4515483-CDS-A-nodosum_M_contig9540:8122..82691680870459.4515483-CDS-A-nodosum_M_contig9540:8122..8269Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9540 8123..8269 +
1680870459.471828-CDS-A-nodosum_M_contig9540:8657..87081680870459.471828-CDS-A-nodosum_M_contig9540:8657..8708Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9540 8658..8708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9540.2.1prot_A-nodosum_M_contig9540.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9540 7706..8708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9540.2.1

>prot_A-nodosum_M_contig9540.2.1 ID=prot_A-nodosum_M_contig9540.2.1|Name=mRNA_A-nodosum_M_contig9540.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MAEESGAAPTTNEQVEEARLIFQIREAHSKALREAASKLQANGFDRHLRP
LKGKVDVDLAALAAKVVERVVERSEEGFNKLCDRMAVNEKP*
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mRNA from alignment at A-nodosum_M_contig9540:7582..9048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9540.2.1 ID=mRNA_A-nodosum_M_contig9540.2.1|Name=mRNA_A-nodosum_M_contig9540.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1467bp|location=Sequence derived from alignment at A-nodosum_M_contig9540:7582..9048+ (Ascophyllum nodosum dioecious)
CGTTGGTACTGTTTCCGTGGCGCCTCGACTCATATCTTCGCCCCAGGGTC
TACAGACTGGGTGTCAAGAGTTTTTCTCCATCCCGAAGGTAGAAGGTTGG
AATTGGATATTTCTTGTGCAAATCATGGCGGAAGAATCCGGGGCAGCTCC
GACGACGAATGAACAAGTGGAGGAAGCACGACTTATATTCCAAATAAGGG
AGGTGCGTGAGTTGATACAGCTGTGTCCAATGATTTTACGAGGTGGCTTG
CTGCGCTAGGTTTTGTCGCGCCCTGCTTCCCCGTTCAGCAGAACTCAAGC
GTGATGAGCCACCGTGCACAAGCACACGGCAGTAGATATTATGGCTTGTG
AAAAATACGAAACCATACGAAACACCAAGGACCAGGCACAtcTCTGAAAA
CAGCAAGGGCTAGGCACATCTCTTGCTATGCGCGCAAGTACATCGCCCGA
GGGAGGACCGGACTGGAATCACCAACGGTCTGGTCACACAGAGTTAATAC
AGTACACCGTCTCCTCTACTTTTCTCTTTCGTTGGAACCAGGCACACTCC
AAGGCTCTGCGGGAGGCGGCGTCGAAACTTCAGGCAAATGGGTTCGACCG
TCACTTGCGGCCTCTCAAGGGGAAGGTGGATGTCGACTTGGCGGCGCTCG
CGGCGAAGGTGGTGGAGAGGGTGGTGGAGAGGTCGGAGGCGAGTCGAGTT
TTGCAGGCCGTCCCTCATTGTTGCAGGATCGCGTGTCATTTCGAAAGCCT
GCCTCTGCAGTAATCTTCGTACAGTGTGCACGGTCTGTTTTTCGGCACCC
GTCTTGGTAAAAAAAAAAAGAGTCCATCTTCAAACGGCTGGGTTGAGATG
CGTGCACGGGGTCGGTTGGAGTGTTGCGTCACAGGAAGCTTGATAGCATA
CTAGGAGCATTCACTTTCTTCTACCTCCAGCGTTGACGCCTCGGGACAAC
GACACTACTGTAGAATGCAGGCCGCCCTGCTATAGCATCCGCTACATAGG
GGTAGCGTCTCGTGCATCCATTCTCCGGTACCTGTTATATGTGAGTTAAA
TTTCCAGCGTCGCCGCGCACCGGCAGGAGGGGTTCAACAAACTGTGCGAT
CGTATGGCGGTTAACGAAAAGCCTTAGCCCTGGAGCGACGGCGGCAACGA
CCAGAGGCGAGAAATGTGAATGGAATGGCGTCTCGGAGCAAAACGTTGAG
CTTTTTGGTGGCTGATAATAATAGGTGAGGCCGCCACAGCGGAGAGCTCT
TGGAAGATCACCGCGTTCGGTGTCCCTGTGGCACCATGTACGGGAAGCCA
AGCCGGCTTTGCACGTTTTCGCATCGCACCCTCCTCCTCGCTAAAACTCC
GCAGTCCCCTGCTTGTTTTTTCGATCTCTTTCGCACATTTCGTGGCAGTT
GTTGTTGTTGTTGATTCACACATTCAGCGTCTTGTCCTTGTGTGTGTGTT
TTATTCATTCATTCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9540:7582..9048+

>mRNA_A-nodosum_M_contig9540.2.1 ID=mRNA_A-nodosum_M_contig9540.2.1|Name=mRNA_A-nodosum_M_contig9540.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig9540:7582..9048+ (Ascophyllum nodosum dioecious)
ATGGCGGAAGAATCCGGGGCAGCTCCGACGACGAATGAACAAGTGGAGGA
AGCACGACTTATATTCCAAATAAGGGAGGCACACTCCAAGGCTCTGCGGG
AGGCGGCGTCGAAACTTCAGGCAAATGGGTTCGACCGTCACTTGCGGCCT
CTCAAGGGGAAGGTGGATGTCGACTTGGCGGCGCTCGCGGCGAAGGTGGT
GGAGAGGGTGGTGGAGAGGTCGGAGGAGGGGTTCAACAAACTGTGCGATC
GTATGGCGGTTAACGAAAAGCCTTAG
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