mRNA_A-nodosum_M_contig954.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig954.3.1
Unique NamemRNA_A-nodosum_M_contig954.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 4.660e-150
Identity = 221/335 (65.97%), Postives = 262/335 (78.21%), Query Frame = 3 
Query:  294 SGGDYMTASRVEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSDLRWHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLPTTCSAAADG-------EGLGAGRVAMDTDQVAGVERL----------CWEGPFLVDIRYETSSDQVSFYRCAPDYAEGLTELQREHLSAVEGSTCELAWRGILHDHRSL 1247
            +G DYM A++VEEYQ  IR+KL QRL++C GNVVVLFDELQKAAPGTLDAL EAMSEHPRVT++ GG +VSVDSSRVVFLLVSD+GAEGVNAAVLR+R+RSDV+PG LQ+AVK++LDEQWERLRFGKMVDKV+PYLPMDPASNLL++ELKL++LA+TL GG+YTTS LRWHLVQP+YIQY++YHV L   G EE+IRH LA YGAR   K SMRR+T A+R HVL  TC+A  +G       EG G G                         CW  PF+VDIRY+ S++QVSF+RC PDYA+GLTELQREH   VEG  C+LAWRG+LH+H +L
Sbjct:  149 NGADYMVAAKVEEYQSLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRKRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLDGGLYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRLTGAIRNHVLNPTCAATDEGAEETGSPEGQGRGXXXXXXXXXXXXXXXXXXXXXXXXRCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPDVVEGPKCDLAWRGVLHEHGAL 483
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A7S4DD61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD61_HETAK)

HSP 1 Score: 165 bits (417), Expect = 7.240e-42
Identity = 89/203 (43.84%), Postives = 122/203 (60.10%), Query Frame = 3 
Query:  315 ASRVEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMY----TTSDLRWHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGAR 911
            A  +  Y  +I+ +LV  L+ C GN VVLFDE+QK  PGTLD L EAM+EHP++T+   G +V+VD S+V+FLLVSDIG E + +  L +R RS+V    L+   K ALD QW  LRFGK++D+V+PYLPM+      ++ LKL  L     G  +     T +   HLV  R+I+Y  Y        +E+ I  + A YGAR
Sbjct:  148 AMPISRYHTEIKSRLVAHLRHCGGNAVVLFDEVQKVVPGTLDVLMEAMTEHPQLTFFSNGKAVTVDCSKVIFLLVSDIGWERMVSRQLLYRTRSEVPAEELRREAKSALDAQWAHLRFGKVIDEVVPYLPMEAPQLREVLRLKLANLHRQFQGQFWLRLCVTPETEEHLVSHRFIEYKKYKTA---ASAEKGIEKEFAEYGAR 347
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.910e-40
Identity = 92/204 (45.10%), Postives = 128/204 (62.75%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPG----GMYTTSDLRWHLVQP--RYIQYTTYHVKL--DIGGSEEVIRHDLALYGAR 911
            + +Y  +I+ +LV  L+ C GN VVLFDE+QK  PGTLD + EAM+EHP +TY   G +V++D S+VVF+LVSDIG E + +  L +  RSD+    ++A VK ALDEQWERL+FGK+VD+VIPYLPM+      +++LKL  L     G    G+  T     HLV P  R + Y  Y  +   D+G    ++++  A YGAR
Sbjct:  269 LAQYHTEIKSRLVNHLRHCAGNAVVLFDEVQKIIPGTLDVIMEAMTEHPTLTYFADGKTVAMDCSKVVFILVSDIGWEKMVSKQLTYHDRSDIPVDEMRAVVKGALDEQWERLKFGKVVDEVIPYLPMEKEQMADVLQLKLGYLDKEFQGDFWRGLCVTEAAAAHLVSPQARLVTYKEYKTRRSEDLG----IVKY-FAEYGAR 467
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A6G0W9D6_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D6_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.440e-40
Identity = 84/220 (38.18%), Postives = 129/220 (58.64%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSD----LRWHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLP 971
            V EYQ+QI+ +L + L +C G  +V+FDE+QK  P TLD LT AMS++ ++TY   G +  VD S V+F+L+SDIG   +   ++++ +R ++ P TL+  VKKALD QW+RL+FGKM+ +V+P+LP +    + IIELKL +L+    G  +   D    +  HL +   + Y      L  G     +R   A YGAR      ++++ S L  H+ P
Sbjct:  179 VTEYQEQIKTRLAEHLSWCSGKAIVVFDEVQKVIPHTLDVLTSAMSKNAQITYYKNGVARKVDCSNVIFVLISDIGVAAIEKLLMQYDKREEIPPATLENEVKKALDSQWKRLQFGKMIHQVVPFLPFEQRHVVEIIELKLAQLSSNYQGKYWRRLDFDAAIAPHLSRLESVLYLERRAVLHAGTE---VRKIFAKYGARDVESGPIQQLKSKLMRHLRP 395
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 9.140e-37
Identity = 86/220 (39.09%), Postives = 126/220 (57.27%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSDLR----WHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLP 971
            + EYQ+QI+ +L + +  C G  VV+FDE+QK  P TLD LT AMS++ ++TY  GG +  VD S V+F+L+SDIG   +   ++++  R DV   TL+  VKKALD QW+RL FGKM+ +VIP+LP +    + II LKL +L+    G  +   D       HL +   + Y      L +GG+   +R   A YGAR      ++++ S L  H  P
Sbjct:  184 LTEYQEQIKTRLAEHIYHCSGKAVVVFDEVQKVIPHTLDVLTSAMSKNAQLTYYKGGVARKVDCSNVIFVLISDIGVANMEKILIQYDNRDDVPFATLENEVKKALDAQWDRLHFGKMIHEVIPFLPFEQRHIVDIINLKLSQLSQHYQGQYWQRLDFNPAVAAHLSRLESVVYLERRATL-VGGA--TVRKVFAKYGARNVESGPIQQLKSKLLRHGRP 400
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A8K1C6J6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J6_PYTOL)

HSP 1 Score: 149 bits (377), Expect = 3.970e-36
Identity = 86/224 (38.39%), Postives = 130/224 (58.04%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSDLRWHL--VQPRYIQYTT------YHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLP 971
            + EY  QI+ +L + L  C G  VV+FDE+QK  P TLD L EA+SE  +++Y   G S ++D+S V+F+LVSDIG   +   ++ +  R DV    L++AVK AL+ QW+RL FGKM+D+V+P+LP +  + + IIELKL++L D    G+Y      WH   +Q    +Y +      Y V+  + G +E I    A YGAR      ++ + S L  ++ P
Sbjct:  177 ITEYHTQIKTRLSEHLHQCSGKAVVIFDEVQKVIPHTLDVLMEAVSERAQLSYYKNGVSKTIDTSNVIFVLVSDIGVAEMEHVLIDYENREDVPHSALESAVKTALNAQWKRLNFGKMIDRVVPFLPFEQPNVIQIIELKLEQL-DKNYRGVY------WHRLWIQDGISEYMSLMDSVEYSVRYRVVGGKEEISKIYAKYGARNVETGPLQLLKSKLLRYLRP 393
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A067D1W6_SAPPC (AAA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1W6_SAPPC)

HSP 1 Score: 144 bits (363), Expect = 2.110e-34
Identity = 82/220 (37.27%), Postives = 126/220 (57.27%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSDLR----WHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLP 971
            V +YQ+QI+ +LV+ L  C G  VV+FDE+QK  P TLD LT AMS + ++TY   G +  VD S V+F+L+SDIG   +   +++++ R ++    L+ AVKKALD QW+RL+FGKM+ +VIP+LP +    + +I LKL+ L     G  +   D+      HL     I Y     +  + G E  ++   A YGAR      ++++ S L  ++ P
Sbjct:  163 VTQYQEQIKSRLVEHLTKCSGKAVVVFDEVQKVIPQTLDVLTSAMSSNAQLTYYKNGVARKVDCSNVIFILISDIGVGNMENIMIQYKSRDELPFAELENAVKKALDAQWDRLQFGKMIKQVIPFLPFEQRHIIDVINLKLRHLGANYEGKYWYKLDIEPGIAQHLSTLESIPYQAR--RASVKGKE--LQKVFAKYGARSVESGPIQQLKSKLLRYLRP 378
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A1V9ZLY5_9STRA (AAA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLY5_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.060e-34
Identity = 82/220 (37.27%), Postives = 125/220 (56.82%), Query Frame = 3 
Query:  324 VEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMYTTSDLR----WHLVQPRYIQYTTYHVKLDIGGSEEVIRHDLALYGARGAAKESMRRITSALREHVLP 971
            V +YQ+QI+ +LV  L  C G  VV+FDE+QK  P TLD LT AMS + ++TY   G +  VD S V+F+L+SDIG   + + +++++ R ++    L+  VKKALD QW+RL+FGKM+ +VIP+LP +    + II LKL+ L+    G  +   D+      HL     I Y      +D    ++V     A YGAR      ++++ S L  ++ P
Sbjct:  183 VTQYQEQIKSRLVDHLSKCSGKAVVVFDEVQKVIPQTLDVLTSAMSHNAQLTYYKNGVARKVDCSNVIFVLISDIGVGNMESIMIQYKSREELPFAELENEVKKALDAQWDRLQFGKMIKQVIPFLPFEQRHIIDIINLKLRDLSHDYKGKYWNQLDIEPGIAKHLSCLESIPYQARRATIDGKDHQKVF----AKYGARSVETGPIQQLKSKLLRYLRP 398
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A4D9D4F5_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4F5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.890e-34
Identity = 76/183 (41.53%), Postives = 114/183 (62.30%), Query Frame = 3 
Query:  318 SRVEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTY---DDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPG-TLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPASNLLIIELKLQRLADTLPGGMY----TTSDLRWHLVQPRYIQYTTY 842
            + V  Y   I+  L + L+ C+G+ VV+FDE+QK  PGTLDAL EA+SEHP +TY   +D      +D+S VVF L+SDIG E + A ++ H   +  +P   L   VK ALD QW+RLR GKM+D V+P+LP+  A    ++++KL  +++   G ++    TT ++R HLVQ  +++Y  Y
Sbjct:   96 ANVTSYIDVIKASLFKHLERCQGHAVVIFDEVQKVVPGTLDALAEAISEHPTLTYYPAEDPRVIHRIDTSHVVFFLISDIGWEDMLALLVAHGGHAAALPPHLLSQRVKAALDAQWQRLRCGKMIDTVVPFLPLSQADMREVLDVKLTEMSEEHAGRLWARLETTEEVRAHLVQKPFVKYVGY 278
[Close]
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Match: A0A836C741_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C741_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.790e-33
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 3 
Query:  318 SRVEEYQKQIRKKLVQRLKFCEGNVVVLFDELQKAAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNAAVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPM--DPASNLLII---ELKLQRLADTLPGGMYTTSDLRWHLVQPRYIQYT--TYHV-KLDIGGSE 872
            + V  Y  QIR++L   L  C G+ VVLFDELQK APGTLD L  A+   P +T   G   +SVD S +V LLVSDIGA  V  A+L + RR DV P  +  AV++ALD QW+ L FGK+VD VIPYLPM       +L++   EL+ Q L   +   +  T  L W L    Y+ Y   TY   +L  GG +
Sbjct:  730 NNVARYHDQIRRQLADVLVPCAGHAVVLFDELQKVAPGTLDVLVPALENRPMLTLPRGRSYISVDCSNLVVLLVSDIGAAAVRGAILPYARREDVPPSAIMPAVQRALDRQWKHLSFGKVVDWVIPYLPMRRQEVYEVLLLKWRELESQLLELRMAAALLVTEALTWELTGRAYVAYGQFTYRAPQLSAGGPQ 922
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig954.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V5_ECTSI4.660e-15065.97AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4DD61_HETAK7.240e-4243.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V512_9STRA5.910e-4045.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0W9D6_9STRA9.440e-4038.18AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485KDB2_9STRA9.140e-3739.09Aste57867_2684 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1C6J6_PYTOL3.970e-3638.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067D1W6_SAPPC2.110e-3437.27AAA domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9ZLY5_9STRA4.060e-3437.27AAA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A4D9D4F5_9STRA6.890e-3441.53AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A836C741_9STRA1.790e-3344.56P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig954contigA-nodosum_M_contig954:32161..39130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3V5
Preferred nameTOR4A
PFAMsTorsin
Model size1568
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
Exons9
Evalue3e-154
EggNOG OGsKOG2170@1|root,KOG2170@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
Cds size981
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig954.3.1prot_A-nodosum_M_contig954.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig954 32605..38812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.8509781-UTR-A-nodosum_M_contig954:32160..323131680870455.8509781-UTR-A-nodosum_M_contig954:32160..32313Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 32161..32313 +
1680870455.8641422-UTR-A-nodosum_M_contig954:32488..326041680870455.8641422-UTR-A-nodosum_M_contig954:32488..32604Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 32489..32604 +
1680870455.982845-UTR-A-nodosum_M_contig954:38812..391301680870455.982845-UTR-A-nodosum_M_contig954:38812..39130Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 38813..39130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.8751504-CDS-A-nodosum_M_contig954:32604..326301680870455.8751504-CDS-A-nodosum_M_contig954:32604..32630Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 32605..32630 +
1680870455.8903697-CDS-A-nodosum_M_contig954:36530..366761680870455.8903697-CDS-A-nodosum_M_contig954:36530..36676Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 36531..36676 +
1680870455.9025292-CDS-A-nodosum_M_contig954:36917..370841680870455.9025292-CDS-A-nodosum_M_contig954:36917..37084Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 36918..37084 +
1680870455.9135609-CDS-A-nodosum_M_contig954:37387..374371680870455.9135609-CDS-A-nodosum_M_contig954:37387..37437Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 37388..37437 +
1680870455.929322-CDS-A-nodosum_M_contig954:37641..377751680870455.929322-CDS-A-nodosum_M_contig954:37641..37775Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 37642..37775 +
1680870455.9409227-CDS-A-nodosum_M_contig954:37898..380291680870455.9409227-CDS-A-nodosum_M_contig954:37898..38029Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 37899..38029 +
1680870455.9565525-CDS-A-nodosum_M_contig954:38211..384031680870455.9565525-CDS-A-nodosum_M_contig954:38211..38403Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 38212..38403 +
1680870455.970184-CDS-A-nodosum_M_contig954:38677..388121680870455.970184-CDS-A-nodosum_M_contig954:38677..38812Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 38678..38812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig954.3.1

>prot_A-nodosum_M_contig954.3.1 ID=prot_A-nodosum_M_contig954.3.1|Name=mRNA_A-nodosum_M_contig954.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=327bp
MWNQDSPGSGGDYMTASRVEEYQKQIRKKLVQRLKFCEGNVVVLFDELQK
AAPGTLDALTEAMSEHPRVTYDDGGHSVSVDSSRVVFLLVSDIGAEGVNA
AVLRHRRRSDVIPGTLQAAVKKALDEQWERLRFGKMVDKVIPYLPMDPAS
NLLIIELKLQRLADTLPGGMYTTSDLRWHLVQPRYIQYTTYHVKLDIGGS
EEVIRHDLALYGARGAAKESMRRITSALREHVLPTTCSAAADGEGLGAGR
VAMDTDQVAGVERLCWEGPFLVDIRYETSSDQVSFYRCAPDYAEGLTELQ
REHLSAVEGSTCELAWRGILHDHRSL*
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mRNA from alignment at A-nodosum_M_contig954:32161..39130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig954.3.1 ID=mRNA_A-nodosum_M_contig954.3.1|Name=mRNA_A-nodosum_M_contig954.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6970bp|location=Sequence derived from alignment at A-nodosum_M_contig954:32161..39130+ (Ascophyllum nodosum dioecious)
ACGGACTCACGACCCGCTAGGGGCAATATAGCAGTACTGTACATCGAACG
TAAGAGAGTAGAGGGTAAGCTACGATTCCCAGAGCACCTTCAGGACACCC
TCCGAGGCTTCAGGACATTTTCTGAGGCTGGACTCAACGGAGCATCGGGA
AAGGTAAGGAAACCTACTATACAAGTAAGATTAGACCCTCACGCAAAGTA
GACGGGCCATCATACACACTGCACTTCCTTCTTTACTCTTTATAACATCT
ATACCATCCTACGTCAACCCCATTCGGGCTCGCCGAGCAAACAACAACCC
CCATGGCTTCACCCGACCCGCGTATCAGTGAAGACTCCACCGCCGAACAC
TTCCATCCTCGGCAAGCACGGACGTGGGAGCGAAACCAGCTCGGAAACGG
GCGATAAGGGAGAGGACGGGGGGGGGGGTGGATTTCAACCAAGCATGTGG
AATCAGGACAGTCCCGGAAGGTGAGTCTTCCCATATATATTTGCGCACAA
CAAAACAATAAATTGTACAACCCATGCAAATAGATGGCAGAGCGGATCCG
GCACGTACACATACGTACATCATCGACGGTACTCGGACATCTGTACAGCT
CTGCCATAAGAAACGGTACCGTACAAAGCGCTCCTTGCGACCACACAAGA
GACTGTGTTTGTTTGCTTGTAACAACACCGTAAGCCTTTGAAGCGTGTTG
AGACCGCCCAATTTAGGCAAGCGGACGTCCGTACAACTCTGTTCTTGCTG
CGAGATGGTACGATCCAAATCACTCACCGCACGTACACATTTATTTATTT
ATAACCTTATTTTGGGAATAGCATGTGACTACGGAAATTTGTTTGTTTGC
CTTCAAAGAAAGACATAAAGAGATAAAGTAAACCTTTCGCCACAGTAGCT
CAGAGGTAACATGTTACCCTCCAGACACGTTGGGACGTGAGTTCGAATCC
CGGCCAACAATTTTTTTCTTTTAAAAGTATATATATATAGCCACTTCACG
GCACGAGTACAAAACGGGGAAAACGTACATTACCCGTGCTACTGTTGCAC
GGCGCGAGTACAAAACGCGGTGCAACGGTACAGCCACAGCACGGTATGAG
TACAAAACGGGTAAAACGTTTATTACCCGTGCTGAATGTTGCACGGCGCG
AGTACAAACGCAGTGCAATGGTACAACCACAGCACGGCACGAGTACAAAC
GGATAAAACGTACATTACCCGTGCTACTGTTGCACGGCGCAAGTACAAAA
CGCGGTGGAATGGTACAGCCACAGCACGGCACGAGTACAAAACGGGTAAA
ACGTACATTACTCGTGCTGACTGTTGCACGGCGCGAGTACAAAACGCGGT
GCGATGGTACAGCCACAGCACGGCACGAGTACGAAACGGGTAAAACGTAC
ATTATCCGGGCCGACTGCGCAATAGTATACGCACGGCACGAGTAATTAAC
GGGTAGAAGGTACAAGCAAGGTACACACTGTGCAAGGGTACAGCCACAGC
ACAGCACGAGTGTTTGTGTGTGTGTGTTTTCTTCCCATTCATTCTGGACA
TCAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCGCAC
AGGATTTCTCATCCACCTTCTTTCTGCGGTGCGTGCCTTAATTTTTCTCG
CGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGATCGTGAAGTCGAATTT
TGTGTACTAACGATTTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTG
TTTTTTAGTTTTTTAGTGAGAAAAAATCCCGTTTGCCGGGATCGAACTCA
CGTCCCAACGTATTAGAGGGTTACGAGGTACCTCTGAGCTACCGGGGCGA
CCGGCTCGAGTACAATGTATTATATACATAGTATAGATCACCAGGGTTGC
CAACCCCCTTCGCGGTCAGCTGTGCACACAGGCAAGCGTACAATTGCACC
TCTACAGGTCAAGTAGCACAAATACAACGTACGTAGAAACCATCGCGCGA
CATTACCAACAGATTGTCCATGTCAGTAGGAGTAGCGCTACAAGTACAGC
GTGAGAGTCCAAACGCGAGGGTACGTACATGGCTCGGGTTACCCTGTACA
AGGATACAAGCACGGGCATATAGGTGCATTGCCCGTGCTGACCAAGCGAA
GCACTGCACGAACGGGTACCAGTACGAGTACGAACACGGGCAAACAGGTC
ATTGCCCGCACTAGCCCAAGGAAACGCTGTACAAGGAGTACAAGCACAGT
ACACAATGTGCAACGATTCACGCACAGTACGAGTACGAACACGGGCAAGT
AGGCACATTGCCCGTGCTGACCGAGTGAAGCACTGTACAAGGAGTACCAG
TACGAGTAAGAACACGGGCAAATTAGGTACATTGTCCGCACGGGCCACGC
GAAAACACTGTCCCTGGAAAACAAGACATCCACGGTAAGGAGGAAGGCCA
CCACGACCCTCTTGGGGCAGTTCCTCTCGTCACGAACCACCGGCGGCACC
ATTCGTATGGTGACGGCCCAGCCGAGGGATATCGTACAATTTTTGTGCTG
GTTGGACTCCTGCAGCAACAGGAGACGCACAGTCGTATACTCTCCGGGTG
CTCAACCCAACCAATGGAGAATGCGCAAAGCGGTACGCACACGATTCCTT
GAGGATAAACTACGTTTCGAAACTGGCGGTGGCGTACGAGCGCGATCTCG
GCATCACCACCGACTGGAGCGATGCTCTCCGGATCGGAAATCCGATCAGA
AGTGACCTAGTCACACAATACATGACGTTTAAGCCATGCGAACCTTTGTC
TGCGTTTCGTTTTTTTTGTTTTTTGGTGCCTCCGCGTGGCACAGAAAACC
TCCACAAGTCTAATCATCTGTAGTCTATACTCCTAGGCACGCAAAGACCT
CTTCTCACTCACACCCACAAAAACAAAGCCTTGGCCTCCGACACAATAAA
GCCTTAGCATGCATCCCACCAGCTAGAAGCTGGCTACTGTTGCGAGTCAT
GGCAAGCAGGGCTCGTGAAGGTTGTCAGCCTGTTCGGCAGACAGTTCTCT
TCCTGATCCTCCTATTATATACAGAAGATGGGTCCGTTGGGCACGTTGCA
GAAAAAAGCACAGACCGCATCACAGTATTCATCTGTATACTCCGTTCACA
CCACCCACAAAAACAAAGCCTTAGCCTCCGACACAACAAAGCCTTAGCCC
GCATCCCACCAGCTATTAATAGAAGCTGACTACTGTTGCGACTCATGGCA
AGCAGGGCTCGTGAAGGTTGTCAGCCGGGTCGGCAGACAGTTCTCTTCCT
GGTCCTCCTACAGAAGACGAGTCCGTCGGACACGTTTCTCGTGGCGAGCA
GAAAGCACAGACCACATCCCAGAAGTCTCCAGGCACCGCCAGTGCCTGCG
AGGGCCTCATTGAGCTAGGGAATTGTGACCGTGTACCTCGGAACAGCGTC
TACACCAGAGACATTTTGTACTATGCTTTGTTTGATCAATTACCGGTCAG
TTATTGTTGTAGTATTGTCATGGTTACCGGTTATGTTTAGTATATTCAAA
AATATACCGGTACTCCGTATACTACTACTGTAAACGTAGCGGATTGACTT
TTTCGTTCACGGTGTGTGTTGTGTGTTTTCTTCCCATCCATTCTGGACAT
CAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACA
GGATTTTTAATCCACCTCCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGC
GAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTT
GTGTACTAACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGT
TTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACG
TCCCAACGTGTCAGAAGGTTACGAGGTGCCTACTGAGCTACCGGGGTCGA
CCGGCTATTCACGGTACGCACCAAAAATAATGCTTCATCGTATTATACTG
ATTAGTTTGATAATTAGTCCATGGATGGACCAGACCGTCCGATGTCGACG
AAAATATTATGAAGGTGTGAAACTTCAAACTTTGTTCCTGTAGACTATTT
ATTTGACGTCTACTGACTTGTGTATGTTTCATCAGTAGTCAAACCATATT
CAAAGTGGAAACCGAAAAACCGAAAACCGAAAAAATCAGAGGTATTTGAT
AGTCTGGCTGCACATAAGAACCTGGCTAAATTGTGACGTAACGCATCTAT
TTTCTCCAGATTATAATATTATTTTCAGTATTGTACACCAAGTCCTATCA
CCCTCCTTATCCTTGAGCTTACGACCTAACTTCAAGCGGCTGCGTGAATT
TCATCCCCGTGCTACGACAGTGGAGGGGACTACATGACTGCATCCAGAGT
GGAGGAATACCAGAAACAAATACGAAAGAAGCTGGTTCAGCGACTCAAGT
TTTGTGAGGGCAACGTCGTGGTTTTGTTCGATGAGCTCCAGAAGGCGGCC
CCGGGAACACTAGACGGTGAGACAGCAAGCTACGCAAATCTAATGATACA
AGTTGTCGCGGCACACCGCGTTCTGAATAGCCCGCTAGAATTTCTTTCGT
GCACCTTCTGATTGCGTGCGCCTTTCGCCAATCTACCTCTCGAGGGTGGG
GTGGGGCTAAGAGCCAAACAGTTCCATTGCCCTACCCTTATCTCCCAAGC
CACTCGCCATACTCACCGAGGAGCTCGCGCCGCTCCTGTCGAATTAAAAC
AAATCAGCCCTGACGGAAGCGATGTCAGAGCATCCTCGAGTGACATACGA
CGATGGGGGACACTCCGTCTCGGTGGACTCAAGCCGCGTCGTCTTTCTAC
TCGTGTCGGACATCGGGGCGGAGGGCGTGAACGCTGCCGTGCTGAGACAC
AGGAGGCGTTCCGACGTTATACCGGTGAGTCCGTGTGGCGCCTCTTTTCC
GCTTTCTTTTTATGTCACTTGTGGTCATGTCGCTCCTCGAGCCGCAATGC
GGGGTTGCAGGGCGTCATGATAAGACAGGGTGTTGCGAGGCGGAAGTTCT
CTCGAAAAGCGTGGCGTGAACGTCATAGCGATGCCTGTAGCAACACTGTC
AGCGTTGTCCGACTGCTTGGCGTGACCTTTCCGCGTTCGCCGTCTCTTGC
GCCGCCTCGTCGCGCAACGCTCTTTTGAGTACTTGAATGTCCCGACCGTC
TGTATGTGCGCTCTGTGGCTTTTGCAGGGTACTCTCCAGGCTGCTGTAAA
AAAGGCTTTAGATGAGCAATGGGAGAGGTGAGATGCCTGCGCGTATCATC
GTTCACGGTCGGACAAAATGCAAAGAGCAAATGTTGACCACAACTTCTAT
GACGAGCTCATTTCGATAGAGGCTTGTCAATCTCTGGAAGATAAGACATA
GATGTGTGTGGTCGTTGAGCGCACTACCCCAAACCTCTATCAGACTCGTT
CAGCACGCTCCCTCGCCGATGGTGTATCCAGGCTGCGATTTGGAAAGATG
GTGGACAAGGTCATCCCCTACCTTCCGATGGACCCTGCAAGTAATCTCCT
GATCATTGAGCTCAAGCTGCAGAGGCTTGCAGACACTCTACCTGGCGGGA
TGTATACTACCTCAGGTAAAGACCTCACTCCCTTTGGAAACGTCGTCAAA
TGGGCTAGAGAACAGTAGAATTGTTCGGTTGTGGTCCACATTTGCCTGAA
ATATTTCCTCTCCCGACGGACGATCTGTTCTTTGTCAGACCTACGGTGGC
ACCTGGTGCAACCACGATACATCCAGTACACCACGTACCACGTGAAGCTT
GATATCGGGGGTAGCGAAGAAGTGATTAGACACGACCTCGCCCTCTACGG
GGCGAGAGGCGCTGCAAAGGTGGGCTACGAACCACTTGTTCTCGCCGAGA
CGAACCGCAACTCGGAAGAGACGCGGTGCTTGTTTTCTCCGTCTTTGTTC
GATCTGGGGTGTAGCTCCCCTAGTATTTGCAGTACGCGATACGGTGATCC
GATCTCTTGTTTCGCGCTCTGCCCGCCGCGACCGCGTCATCGTCGGCCCA
GGAGTCTATGCGACGGATCACAAGCGCCCTCCGAGAGCATGTCTTGCCAA
CAACATGCTCAGCTGCAGCAGACGGAGAAGGATTAGGCGCGGGGCGCGTG
GCGATGGACACGGACCAAGTTGCCGGAGTTGAGAGGCTGTGCTGGGAGGG
ACCTTTCTTGGTGGACATCCGATATGAAACCTCCAGTGACCAGGTTAATG
GCGGCATTTCGGGCGCACATATTATTATTAATTTTCTTGTGTGATGTTGG
TACACTTCGTTCCTTTCTTGGAAGCCCCGGCAATGAGCATTCCTCTCTAT
CTATCGTCTCTTTGGTGTGTATGCCGTTCCCGAGGAAGGCAGCACTCGCG
CTCCGTTCTACAACGTCGGGGTTATTGCCCCCAAGCGCAGCGCGCTTTGA
ATTCCCAGGCGATAACCAAGCACGAGCTTTACCCGCCCGCCCGCCCGCCC
ACACCCGCAAAAAACAGGTTTCGTTCTATCGATGCGCCCCCGACTACGCG
GAGGGGTTAACGGAGCTCCAGCGAGAACACCTGAGCGCTGTCGAAGGCTC
CACGTGCGAATTGGCATGGCGAGGCATCCTGCACGACCACAGGTCTCTGT
GATAAAATAACTCCGTGTGTGCGTGTGAGACCTTGGATCTTGACGAGAGT
GCTGGAAGCTAACTTAGCGCCCTTGTTTCTCCCGTGATGTCCTTTTTAGC
TTTGACTCAATGCCGTCGCAAGACCCCCCCTCGGTCGTTTGTTGAATACC
GTTGCCCACAACTCTTTTTGCTCTTGGCGTGGTGCAGTTTGGAATTGTAA
GCGCACTCACGCCTGATTGCTGCAGGCGATACCATGCTCGCGCTTAAAAC
TTAAAACCGTTGTGGCGGTTTCACATTCGCCTGCCTGGGCGTGGATTTTG
TCCTCTATTCTCCTCTATCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig954:32161..39130+

>mRNA_A-nodosum_M_contig954.3.1 ID=mRNA_A-nodosum_M_contig954.3.1|Name=mRNA_A-nodosum_M_contig954.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=981bp|location=Sequence derived from alignment at A-nodosum_M_contig954:32161..39130+ (Ascophyllum nodosum dioecious)
ATGTGGAATCAGGACAGTCCCGGAAGTGGAGGGGACTACATGACTGCATC
CAGAGTGGAGGAATACCAGAAACAAATACGAAAGAAGCTGGTTCAGCGAC
TCAAGTTTTGTGAGGGCAACGTCGTGGTTTTGTTCGATGAGCTCCAGAAG
GCGGCCCCGGGAACACTAGACGCCCTGACGGAAGCGATGTCAGAGCATCC
TCGAGTGACATACGACGATGGGGGACACTCCGTCTCGGTGGACTCAAGCC
GCGTCGTCTTTCTACTCGTGTCGGACATCGGGGCGGAGGGCGTGAACGCT
GCCGTGCTGAGACACAGGAGGCGTTCCGACGTTATACCGGGTACTCTCCA
GGCTGCTGTAAAAAAGGCTTTAGATGAGCAATGGGAGAGGCTGCGATTTG
GAAAGATGGTGGACAAGGTCATCCCCTACCTTCCGATGGACCCTGCAAGT
AATCTCCTGATCATTGAGCTCAAGCTGCAGAGGCTTGCAGACACTCTACC
TGGCGGGATGTATACTACCTCAGACCTACGGTGGCACCTGGTGCAACCAC
GATACATCCAGTACACCACGTACCACGTGAAGCTTGATATCGGGGGTAGC
GAAGAAGTGATTAGACACGACCTCGCCCTCTACGGGGCGAGAGGCGCTGC
AAAGGAGTCTATGCGACGGATCACAAGCGCCCTCCGAGAGCATGTCTTGC
CAACAACATGCTCAGCTGCAGCAGACGGAGAAGGATTAGGCGCGGGGCGC
GTGGCGATGGACACGGACCAAGTTGCCGGAGTTGAGAGGCTGTGCTGGGA
GGGACCTTTCTTGGTGGACATCCGATATGAAACCTCCAGTGACCAGGTTT
CGTTCTATCGATGCGCCCCCGACTACGCGGAGGGGTTAACGGAGCTCCAG
CGAGAACACCTGAGCGCTGTCGAAGGCTCCACGTGCGAATTGGCATGGCG
AGGCATCCTGCACGACCACAGGTCTCTGTGA
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