mRNA_A-nodosum_M_contig9536.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9536.1.1
Unique NamemRNA_A-nodosum_M_contig9536.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: D7FL45_ECTSI (Plastoquinol--plastocyanin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL45_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 4.310e-55
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWW 297
            ++GDATYL VT D K+QDYGI AVCTHLGCVVPWN AENKF+C CHGSQYD TGKV+RGPAPLSLAL+HVEE DGKVI KEWKETDFRTGD PWW
Sbjct:  130 IKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDGKVIFKEWKETDFRTGDKPWW 224
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=UCRI_SYNE7)

HSP 1 Score: 169 bits (428), Expect = 5.460e-51
Identity = 79/100 (79.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWWA 300
            LV  L+GD TYL V S   I DYGINAVCTHLGCVVPWNA+ENKF C CHGSQYDATGKVVRGPAPLSLALAHV  TD KV L  W ETDFRTGD+PWWA
Sbjct:   80 LVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: A0A846A2U6_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A2U6_9CYAN)

HSP 1 Score: 167 bits (423), Expect = 3.230e-50
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEET-DGKVILKEWKETDFRTGDSPWWA 300
            L+GD TYL VT    ++DYGIN++CTHLGCVVPWNA+ENKFIC CHGSQYDATGKVVRGPAPLSLALAH + T D KV+L  W ETDFRTGD+PWWA
Sbjct:   84 LKGDPTYLVVTESGSLEDYGINSICTHLGCVVPWNASENKFICPCHGSQYDATGKVVRGPAPLSLALAHADVTEDDKVVLSPWTETDFRTGDNPWWA 180
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: A0A6I5NWI2_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5NWI2_9CYAN)

HSP 1 Score: 166 bits (420), Expect = 9.220e-50
Identity = 76/101 (75.25%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEET-DGKVILKEWKETDFRTGDSPWWA 300
            LV  L+GD TYL VT    + DYGIN+VCTHLGCVVPWN  ENKFIC CHGSQYDATGKVVRGPAPLSLALAH E+T DGKV+L  W ETDFRTG +PWW+
Sbjct:   80 LVQGLKGDPTYLVVTESGSLGDYGINSVCTHLGCVVPWNGGENKFICPCHGSQYDATGKVVRGPAPLSLALAHAEQTEDGKVVLSPWTETDFRTGAAPWWS 180
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: W7TXJ0_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXJ0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.600e-49
Identity = 75/99 (75.76%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWW 297
            LV  L+GDATYL V  D  I++YG+NAVCTHLGCVVPWN AE+KFIC CHGSQYD TGKVVRGPAPLSLALAHV+E+DGKV+L  W ETDFRT  +PWW
Sbjct:  138 LVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: UPI001A0E73EF (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A0E73EF)

HSP 1 Score: 164 bits (416), Expect = 3.620e-49
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWWA 300
            L+GD TY+ V S++ I +YGINAVCTHLGCVVPWNA+ENKFIC CHGSQYD TGKVVRGPAPLSLAL HVE  D KV L  W ETDFRTG+ PWWA
Sbjct:   84 LKGDPTYIVVESESSIANYGINAVCTHLGCVVPWNASENKFICPCHGSQYDTTGKVVRGPAPLSLALVHVEVVDDKVTLTPWTETDFRTGEDPWWA 179
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: UPI0016896140 (cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016896140)

HSP 1 Score: 164 bits (416), Expect = 3.620e-49
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWWA 300
            L+GDATY+ VT   +I +YGINAVCTHLGCVVPWNA+ENKF+C CHGSQY+A GKVVRGPAPLSLALAH   TD K++  EW ETDFRTG++PWWA
Sbjct:   84 LKGDATYIVVTDSKEIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDDKLVFSEWTETDFRTGENPWWA 179
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: A0A0C1YD37_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1YD37_9CYAN)

HSP 1 Score: 164 bits (415), Expect = 5.290e-49
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEET-DGKVILKEWKETDFRTGDSPWWA 300
            L+GD TYL VT D  ++ YGIN+VCTHLGCVVPWNA+ENKF+C CHGSQYDATGKVVRGPAPLSLALAH + T D KV L +W ETDFRTG+SPWWA
Sbjct:   84 LKGDPTYLVVTEDGNLEKYGINSVCTHLGCVVPWNASENKFMCPCHGSQYDATGKVVRGPAPLSLALAHADITEDDKVSLTDWTETDFRTGESPWWA 180
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: UPI00202003BD (cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI00202003BD)

HSP 1 Score: 164 bits (415), Expect = 5.290e-49
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWW 297
            LV  L+GD TYL VT D  I++YG+NAVCTHLGCVVPWNA+ENKF+C CHGSQYD TGKVVRGPAPLSLALAH    D KV+L  W ETDFRTG+ PWW
Sbjct:   81 LVQGLKGDPTYLIVTEDKTIENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDNTGKVVRGPAPLSLALAHTNVEDDKVVLTSWTETDFRTGEEPWW 179
[Close]
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Match: A0A8J5X155_DIALT (Rieske domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X155_DIALT)

HSP 1 Score: 165 bits (417), Expect = 8.300e-49
Identity = 75/99 (75.76%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCHGSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWW 297
            LV  L+GDATYL VT D KI+ Y +NAVCTHLGCVVPWNAA+ KFIC CHGSQYD+TGKVVRGPAPLSLALAHV    GKV+L  W ETDFRTG +PWW
Sbjct:  119 LVEGLKGDATYLIVTPDKKIETYALNAVCTHLGCVVPWNAAQQKFICPCHGSQYDSTGKVVRGPAPLSLALAHVNGDSGKVVLSTWTETDFRTGLAPWW 217
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9536.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL45_ECTSI4.310e-5583.16Plastoquinol--plastocyanin reductase n=2 Tax=Ectoc... [more]
UCRI_SYNE75.460e-5179.00Cytochrome b6-f complex iron-sulfur subunit n=3 Ta... [more]
A0A846A2U6_9CYAN3.230e-5076.29Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A6I5NWI2_9CYAN9.220e-5075.25Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
W7TXJ0_9STRA3.600e-4975.76Plastoquinol--plastocyanin reductase n=2 Tax=Monod... [more]
UPI001A0E73EF3.620e-4976.04Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
UPI00168961403.620e-4973.96cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A0C1YD37_9CYAN5.290e-4976.29Cytochrome b6-f complex iron-sulfur subunit n=4 Ta... [more]
UPI00202003BD5.290e-4973.74cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A8J5X155_DIALT8.300e-4975.76Rieske domain-containing protein n=3 Tax=Diacronem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9536contigA-nodosum_M_contig9536:660..1813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FL45
Preferred namePETC
PFAMsCytB6-F_Fe-S,Rieske
Model size435
Max annot lvl2759|Eukaryota
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009512,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009941,GO:0009987,GO:0010196,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046028,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0070069,GO:0071944,GO:0080167,GO:0098542,GO:1990066
Exons3
Evalue1.72e-56
EggNOG OGsCOG0723@1|root,KOG1671@2759|Eukaryota
EC1.10.9.1
Descriptionoxidoreductase activity, acting on diphenols and related substances as donors
Cds size303
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.5238304-CDS-A-nodosum_M_contig9536:659..8361680870455.5238304-CDS-A-nodosum_M_contig9536:659..836Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9536 660..836 +
1680870455.5430942-CDS-A-nodosum_M_contig9536:1156..12361680870455.5430942-CDS-A-nodosum_M_contig9536:1156..1236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9536 1157..1236 +
1680870455.5530024-CDS-A-nodosum_M_contig9536:1635..16811680870455.5530024-CDS-A-nodosum_M_contig9536:1635..1681Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9536 1636..1681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.5625145-UTR-A-nodosum_M_contig9536:1681..18131680870455.5625145-UTR-A-nodosum_M_contig9536:1681..1813Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9536 1682..1813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9536.1.1prot_A-nodosum_M_contig9536.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9536 660..1681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9536.1.1

>prot_A-nodosum_M_contig9536.1.1 ID=prot_A-nodosum_M_contig9536.1.1|Name=mRNA_A-nodosum_M_contig9536.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp
LVGILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICHCH
GSQYDATGKVVRGPAPLSLALAHVEETDGKVILKEWKETDFRTGDSPWWA
*
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mRNA from alignment at A-nodosum_M_contig9536:660..1813+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9536.1.1 ID=mRNA_A-nodosum_M_contig9536.1.1|Name=mRNA_A-nodosum_M_contig9536.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1154bp|location=Sequence derived from alignment at A-nodosum_M_contig9536:660..1813+ (Ascophyllum nodosum dioecious)
CTCGTTGGTATCCTCCAGGGCGACGCTACCTACCTGTCGGTAACGAGCGA
CAATAAAATTCAAGATTACGGCATCAACGCCGTCTGCACGCACCTTGGTT
GCGTCGTGCCTTGGAACGCAGCGGAGAACAAGTTCATCTGCCATTGTCAC
GGCTCCCAATATGACGCCACCGGAAAGGTGATCGTACCCACCACAATTAT
ACCCTTCGGGACAACAACCAACTGCGCGTTTGTTATTGTCGACAGTTGAA
CCTTTCAGAATATTGGTATTATATTTGTTTCTCTCCTTTGCCAACAGAGT
CGGGGATGGGGGACGCGCATCGGCTGAACCCTTTCCGTGCGTATTGTGGG
GAAGGTAGTACAGGTCTCCTTTTGCTCCGGAACAGGGGCAAGCTCTGTCC
TTGCGTTCTGCGCATCGGCGATTTCCCTGGTGTGTTTCGATGCGAGATAT
TCAAACCTCAATGTTTTCTGCCGTTTCAACTTTGTGTGTCCCACAAGGTG
GTGAGGGGCCCGGCACCACTCTCGTTAGCTCTCGCGCACGTGGAGGAGAC
CGACGGCAAGGTTATTTTAAAGGAGTGGTGGGTGGTTAGTAGTATGTGTT
TTGCAATTAATCTTAACGTATCTATAGGGTTGATGGACGATACCGATTTC
TGGTCCGCGTGTGATAGGACATTTGTCTAGGAGCTGCCGGTGCCTGATCC
AGCATCAGCGTGGATAGTAAAGTGTACTACATGTGCTAGGGCTTCCATAT
AATATCATGTAGACATTTTACCACTGGTATATATGACACTGAAAACCTCG
AGCTAGGACAACAGGACGAACAGAAACGACGCTCGCGGTCGCGCGCATAG
GTGCGCCTACCTACGCAGCATCCGAATAAGATGCAGTGCAAGCATTCCGC
TCGAAGTGGCTTACCCGATCGTTGTGTACCCAGCCTTCCGTCCAATGCTG
TCTGCTGTCTACCTCTTTTCTCACAGGAAGGAAACAGACTTCCGCACCGG
GGATTCACCGTGGTGGGCGTAGAGAGTCGCCGCGTAATGGTGCCATCCAA
TCCAGGAAGGCGTTCATCGAGCTGGGTTTATTTTTCACTTTGCATAGAGA
GCCTCAAACGCGGATACTGTAGAAAAGGTCCGGTATGTTAAGGCTGCACT
ATAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9536:660..1813+

>mRNA_A-nodosum_M_contig9536.1.1 ID=mRNA_A-nodosum_M_contig9536.1.1|Name=mRNA_A-nodosum_M_contig9536.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig9536:660..1813+ (Ascophyllum nodosum dioecious)
CTCGTTGGTATCCTCCAGGGCGACGCTACCTACCTGTCGGTAACGAGCGA
CAATAAAATTCAAGATTACGGCATCAACGCCGTCTGCACGCACCTTGGTT
GCGTCGTGCCTTGGAACGCAGCGGAGAACAAGTTCATCTGCCATTGTCAC
GGCTCCCAATATGACGCCACCGGAAAGGTGGTGAGGGGCCCGGCACCACT
CTCGTTAGCTCTCGCGCACGTGGAGGAGACCGACGGCAAGGTTATTTTAA
AGGAGTGGAAGGAAACAGACTTCCGCACCGGGGATTCACCGTGGTGGGCG
TAG
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