mRNA_A-nodosum_M_contig953.41.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.41.1
Unique NamemRNA_A-nodosum_M_contig953.41.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:287565..288443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog99158.XP_008885547.1
PFAMsMORN
Model size384
Max annot lvl5794|Apicomplexa
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.6e-05
EggNOG OGsCOG4642@1|root,KOG0231@2759|Eukaryota,3YGC3@5794|Apicomplexa,3YKU5@5796|Coccidia,3YSFV@5809|Sarcocystidae
DescriptionMORN repeat-containing protein
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870455.4287117-CDS-A-nodosum_M_contig953:287564..2877221680870455.4287117-CDS-A-nodosum_M_contig953:287564..287722Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 287565..287722 -
1680870455.4457297-CDS-A-nodosum_M_contig953:287918..2880431680870455.4457297-CDS-A-nodosum_M_contig953:287918..288043Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 287919..288043 -
1680870455.45567-CDS-A-nodosum_M_contig953:288342..2884431680870455.45567-CDS-A-nodosum_M_contig953:288342..288443Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 288343..288443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.41.1prot_A-nodosum_M_contig953.41.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 287565..288443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.41.1

>prot_A-nodosum_M_contig953.41.1 ID=prot_A-nodosum_M_contig953.41.1|Name=mRNA_A-nodosum_M_contig953.41.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
SGNTYAGEFRRGTMDGRGRYVWVSNGTIYEGDFSKNEIVGTGRYTWSNGS
YYQGGVSNSLRNGKGIFTSADSTLVRFWKDGKRNGHGMQRYGVGTSCVST
YVGEWQENFRHGRGTMTYASGNTYEGDW
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mRNA from alignment at A-nodosum_M_contig953:287565..288443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.41.1 ID=mRNA_A-nodosum_M_contig953.41.1|Name=mRNA_A-nodosum_M_contig953.41.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=879bp|location=Sequence derived from alignment at A-nodosum_M_contig953:287565..288443- (Ascophyllum nodosum dioecious)
AGCGGAAACACCTACGCCGGAGAATTTCGACGTGGTACTATGGATGGTCG
TGGACGGTACGTATGGGTTTCCAATGGAACGATCTACGAAGGAGACTTCA
GGTGAAAGGGCTTGACAACTCCATGCTTGGCTCATTCTTTCGCTCGTGCC
CCGTGCGCTTCTGGAGTCCTGCGGGATGACGAACTTGATATATATATTTT
TCGACCAACCACACTACATTCGTTTCCAGCTCGAGTAGCGCTGGCTGTTC
TTGGCACAATCGGCACCTTCTCGACATGTACAACCCTAAAGCAGCTCGAT
TCGTTCAGCCGCGGATTAAATCACGTCGTCAATCTCTTAGGGTGTCACCA
CTTCTGCTTCTGCTGTTCGCATCGTTACGTCCTCTATGATATGCCTTCAG
CAAAAACGAAATTGTGGGAACCGGGCGATACACTTGGAGTAATGGGAGTT
ATTATCAGGGAGGCGTCAGCAACAGCCTCCGAAACGGGAAAGGCATCTTC
ACCTCCGCAGATAGCACACTGGTACGTCGCTTGAGAACAAAAAGTGTCCG
CATAACGAAAAGGTTGCTCGTCTCCGACGGGACCAGTTCGTCACAAGGCC
AATGCGGACGCGCGTTAATAGCCCCGAATTCGTAGCTCGGACACCACGCG
GGTGCCTTCCAGAGATATTGATGATGTCATTCTTGGACCGCTAATATTTT
CGTTCTCTAAAGATCTACGAGGGTTTTGGAAGGACGGCAAGCGCAACGGG
CATGGAATGCAACGTTACGGTGTGGGCACGAGCTGCGTTTCCACCTACGT
CGGAGAGTGGCAGGAGAACTTCCGCCACGGGCGCGGAACCATGACCTACG
CGTCGGGCAACACGTATGAAGGCGACTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig953:287565..288443-

>mRNA_A-nodosum_M_contig953.41.1 ID=mRNA_A-nodosum_M_contig953.41.1|Name=mRNA_A-nodosum_M_contig953.41.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig953:287565..288443- (Ascophyllum nodosum dioecious)
AGCGGAAACACCTACGCCGGAGAATTTCGACGTGGTACTATGGATGGTCG
TGGACGGTACGTATGGGTTTCCAATGGAACGATCTACGAAGGAGACTTCA
GCAAAAACGAAATTGTGGGAACCGGGCGATACACTTGGAGTAATGGGAGT
TATTATCAGGGAGGCGTCAGCAACAGCCTCCGAAACGGGAAAGGCATCTT
CACCTCCGCAGATAGCACACTGGTACGGTTTTGGAAGGACGGCAAGCGCA
ACGGGCATGGAATGCAACGTTACGGTGTGGGCACGAGCTGCGTTTCCACC
TACGTCGGAGAGTGGCAGGAGAACTTCCGCCACGGGCGCGGAACCATGAC
CTACGCGTCGGGCAACACGTATGAAGGCGACTGG
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