mRNA_A-nodosum_M_contig953.3.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.3.2
Unique NamemRNA_A-nodosum_M_contig953.3.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:6152..6679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size142
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.6075325-CDS-A-nodosum_M_contig953:6151..62281680870451.6075325-CDS-A-nodosum_M_contig953:6151..6228Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 6152..6228 +
1680870451.6187356-CDS-A-nodosum_M_contig953:6616..66741680870451.6187356-CDS-A-nodosum_M_contig953:6616..6674Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 6617..6674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.6332364-UTR-A-nodosum_M_contig953:6674..66791680870451.6332364-UTR-A-nodosum_M_contig953:6674..6679Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 6675..6679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.3.2prot_A-nodosum_M_contig953.3.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 6152..6674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.3.2

>prot_A-nodosum_M_contig953.3.2 ID=prot_A-nodosum_M_contig953.3.2|Name=mRNA_A-nodosum_M_contig953.3.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
RSTLFRAVCLSPLRERGQPRNTRTAWRPSRELVTQVRASSSSLR*
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mRNA from alignment at A-nodosum_M_contig953:6152..6679+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.3.2 ID=mRNA_A-nodosum_M_contig953.3.2|Name=mRNA_A-nodosum_M_contig953.3.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig953:6152..6679+ (Ascophyllum nodosum dioecious)
CGGTCTACTCTCTTCAGAGCGGTCTGTCTGTCCCCTCTTCGAGAAAGAGG
CCAACCCCGAAATACCAGAACTGCATGGTACCAAATAGCACATAGCACAG
CAAATAGTTTGTATGTTTGCCGAGACTTGGCGCTGACTAGTGCCATGAAA
TGCCCTCGCTGAGATACACAAGTAGTACAGTATTTAATAGTCTCTGCCGT
TCAGTTGTTCTCTCCATCAGTTCCGTACCCCTCGTAAAGATACATACGTA
GCTCTACAGCAGTATCCAGAGCAATTTCCCGCTTGGTACACACAAGTACA
AAAGTACGTAACTTTAGAGCAGAGCTACAATATCTACGTATGAATAGCGA
AATCACATGTTGAACACGATAGCAACAGTCGAACAGATACCTGGTATTTT
CGGTAGGCACTTACCCCTTACCCCTTCCCCTATCTAATGTCATTTGACGT
TCTAACCGCCGCCAGGCGGCCTTCCCGTGAGCTCGTCACACAGGTTCGCG
CTTCTTCGTCAAGTCTGAGATGACAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig953:6152..6679+

>mRNA_A-nodosum_M_contig953.3.2 ID=mRNA_A-nodosum_M_contig953.3.2|Name=mRNA_A-nodosum_M_contig953.3.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig953:6152..6679+ (Ascophyllum nodosum dioecious)
CGGTCTACTCTCTTCAGAGCGGTCTGTCTGTCCCCTCTTCGAGAAAGAGG
CCAACCCCGAAATACCAGAACTGCATGGCGGCCTTCCCGTGAGCTCGTCA
CACAGGTTCGCGCTTCTTCGTCAAGTCTGAGATGA
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