mRNA_A-nodosum_M_contig953.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.27.1
Unique NamemRNA_A-nodosum_M_contig953.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:170580..175350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size369
Hectar predicted targeting categorymitochondrion
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.667405-UTR-A-nodosum_M_contig953:170579..1705921680870451.667405-UTR-A-nodosum_M_contig953:170579..170592Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 170580..170592 -
1680870451.7229824-UTR-A-nodosum_M_contig953:175273..1753501680870451.7229824-UTR-A-nodosum_M_contig953:175273..175350Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 175274..175350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.6825702-CDS-A-nodosum_M_contig953:170592..1706571680870451.6825702-CDS-A-nodosum_M_contig953:170592..170657Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 170593..170657 -
1680870451.693625-CDS-A-nodosum_M_contig953:175059..1752731680870451.693625-CDS-A-nodosum_M_contig953:175059..175273Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 175060..175273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.27.1prot_A-nodosum_M_contig953.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 170593..175273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.27.1

>prot_A-nodosum_M_contig953.27.1 ID=prot_A-nodosum_M_contig953.27.1|Name=mRNA_A-nodosum_M_contig953.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MRRDIYARPLAGGTRRPIAVAVRSSRQRSITTSPCCLTLASLVLATGGNA
CHGRSNLALQPYLPSFVRWDTGRRSGFVLQRRKLRCTACASP*
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mRNA from alignment at A-nodosum_M_contig953:170580..175350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.27.1 ID=mRNA_A-nodosum_M_contig953.27.1|Name=mRNA_A-nodosum_M_contig953.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4771bp|location=Sequence derived from alignment at A-nodosum_M_contig953:170580..175350- (Ascophyllum nodosum dioecious)
CGTTTGGTGTCTGTGCACGTACAGAGGACACCCGTACACTCGTGAGCTCA
CTGTTTATTGGGATCAACAGCGTACCAATGAGAAGAGATATTTATGCGCG
GCCCCTCGCCGGCGGCACCCGCCGCCCGATTGCCGTCGCCGTTCGGTCTT
CTCGGCAGCGTAGCATTACCACGTCGCCTTGTTGCCTTACCTTGGCCTCA
CTTGTACTGGCCACAGGAGGGAATGCGTGCCATGGGCGATCGAACCTCGC
TCTTCAGCCGTATCTACCATCTTTCGTAAGGTGGGACACAGGTGATGCTG
ATGCTTTGGGGCAGGAGTTGTCTTGGAATTTTGCGGTCGGCTTTGAAGTC
TGAAAGCTCATGAAGTCTGAAAGCTCATGATAAAGAAATGACAGTCCCGT
TGCTGATTTTCATTTTTTCTTCGAAAAATATTATTATGAAAAACACTTCC
CGAGGGAACGCGTCTATTAATAGACTAAACCTTGTGAGCATCCACTCAAT
CCGGGAAGGAAAATGTCAAATGTCTAAACGTTCAGGAGGAGACACGCTGG
CGGTATACTATTAATAGCATTGACTGTTAAGAAAAACTCGCCATGTACAG
TACACAGAGTATCGTTTGACCTGAGCTGTAATATTCCCGATGATGATTGC
ATCGGGTCAAGAAAAAAATACTGATGCATCTATTATACCAGGTATACCTG
ATGTAGCCGGTCGCCCCGGTAGCTCAGAGGTACCTCGTAACACTCTGACA
CGTTGGGACGTGTGTTCGATCCCGGCCAACGGGATTTTTCTCACTAAAAA
ACTAAAAAACAAAAATAAAAATGCCCAACGGGTGGAGAACGATTAAATCG
TTAGTACACAAAATTCGACTTCACGGTCAACGAGGGAAAGGAATGGCTGA
ATCCTTCTCGCGAGGAAAATTAAGGCACGCACCGCAGAAAGAAGGCGGAT
GAGAAATCCTGTGTGACCTTCCTCCTGTATGACCCCGGCTGGTACGTCCA
ACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACACACAACACACAC
AACATACCTGAGAGGCGCGTATTATTTGGTCCATGGTGACCTGCCAAGGC
AGCACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTG
AACGCCTTCGGTACGCAATCGTATGACGCGATAAACTCGGGGCTAACCCT
ATGGCGTATGGCGGTTTAAATAAATAAATGGACGCCGCTGCGGAACTCGG
GAGGGATCCCGTAAGTAAGTACCAGGTTCAGCCTAAGTATGGTGATGAGC
AGGCCGACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCT
CAGGCGCGAACGGGGACAGTGAAATATTCATTTTCTCTGTTCAGCTGACC
ACGAACAGGATTGGCAACCTTACCTGGTTGATCCTTATCCTTGTTATGAG
ATGACCATACATACATAGAGCCCATGTACATACTTGTATTGTAGAATTTT
ACTGCCCCGTGTGTTGTACAGGTACACTATTAAATATCAGCAACTGCCGG
TGCTTTCGAGTTTTCTGAAAGTACTTCGTACCGGTACAACGCAAGTCACA
AGTCGTGGCATGTGCTCTTTTATTAATTGTTATATTAGTAGTAATCATAA
TAGTACTGTTCGGTTCAGTACTGCGCAGACAACTGGTCCACAATTATTAG
AGAGTGTTAAGAGCTTAGAGCGAGGGGAGTGCTCGGCACGTGCAATGTAT
ATTATATGATGCAACGCAACGCATGGTGCAGCTTCCGGAAGTACACCCTC
GAACTGTACGACCGACCGAACGCTCCCCTCGAACTCGAAACAAAATCCGG
ATGCTAAGAGCCGAGTTACTCGAGACAATGCTGTACGACTGCGTCACGTG
GAGCCTGCGCGCGTGCCACTATGACACGCTGCGCCGAGCCCGCCACAGCT
TCCTGACTCGCTGCATCGGTTGGCGACAGAAAAATCGCACCGACCATCCG
ATTCACTATCTGGATACGCTTGTCAATACGGGAAGTGAGAGCATCGAGGC
GACTGTACACAGGAGGCGGATCTTATTCGCGGTACTTGTGGCGCGCATGG
AGGATACGAGACTGCTGAAGTGCGTGGTGTTCGGAGAAGTTGTGGGAGGC
GCGGGCTGCGTGGGGGGCCAGGGAAAAGAATGGATGGGGTGTTTCCTGGA
CGACCTCAGAGCTTTCGGTATCAACGCCGACCAGGGGACTACTGCAGCCC
AGGACGAGGGGTAATGGCGCAAGACGGCGGGACAAGGAGCGGAACGTTTC
ATGGCGAAATGGATCGCTGCAGAGAAAGTTAGGGCTGGACTACTGCACGC
AGTGGTATGCCCGAACGTGACGGAAGGACCAAGGAACGGGAAGCCCAAAG
CAAGCGTGCTCGTGCTGGTTCGCTCGCCATAGTTGATACGCCAGGAGTTT
GTATACCTCGGGGAAAACGTCAACCACAACGCCGACCTGTCCATCGAGGT
CGACTGGCGCATACGCAACGCATGGTGCAACTTCCGGAAGTACACCCTCG
AACTGTACGACCGACTGAGCGCTCCCCTCCAGCTCAAAATACGGATGCTA
AGAGCCGAGCTACTCGAGACAATGCTATACGGCTGCGTCGCGTGGAGCCC
GCGCGCGTGCCACTACGACACGCTGTGCCGAGCCCACCACAGGTTCTTGA
CTCGCTGCATCGGTTGGCGAAAGCACAATCGCGCCGACCACCCAATTTCC
TATCTGGGCACGCTTGTCAAGACGGGAAGTGAGAGCATCGAGGCGACTTT
ACGCAGAAGGCGGATCTTGTTTGCGGGATTTGTGGCGCGCATGGAGGATA
CGAGACTGCCGAAGTGCGTGATGTTCGGAGAAATGGTGGGGGGCGCGGGC
TGTGTGGGGGGCCAGAAAAAAGAGTGGATGGGATGTTTCCTGGACGACCT
CAGAGCTTTCGGCATCAACGCCGACCAGTGGACGACGGCAGCCCAGGACG
AGGGGGAATGGCGCAGAACGGCAGAACAAGGGGCGGAAGATTTCATGGTA
AAATGGATCGCTGCATAAAAAACCAAGGCTGGACAACGGCATGCAGTGGT
ATGCCCGAACGTAACGGGAAGGACCAAGGAGAGGATAGCCCAAAGCAAGC
GGGCTCGCGCTGGTTCGCCCACCCTTGTTGACTAGCTACGAGTGGCGCGA
ACTTGTGCCCTCCGGGCGTTTGGTTTGCAGATGTCATGACGTCTTTCTCT
GGTGTTACGTTTGTGTTGTTTTGCTTCGTTTTTGTCTTTATGATGTCGTT
GAAGCCGCGGCCCTTCGTTCAATCGTCCTTCGATATGCAAGCGCCCCGAC
AGCCACACGTGTTTCTTTTACTTTTTTTGGAGATGCCGTTTTTTCCGAGT
ATTTTTTTGTACCATTTCCGCTTTCTCTTTGTATGGAGAGTACGTCGTAC
GTTCTTTCCTTCCGAACGGTGTTTTTCTACCTTGTGACCACGGGCTGGAT
TTTTTACATCAGCTTGTGTGAGAATTCAATCAATCAATCAAGTGGCGCGA
ATTTGTATCCTCCGGGCGGATGCCGCGTTGTCTTTCTCTGGCGTTACGTT
TGTTTTGTTTTTGTTTCGTTTTCGTCTTATTTGCTTTTATCAAAGGCCGA
GGCCCTTCCTCCGGTCGTTCCTCATTCTTAGATATGCATGCGCCCTGGCA
GCCACACGCAGTTACCTATAAGTAACAACGGTTTATGTCCTCTTTTTTTT
TCCTTTTTTTTATTGTCTATTTGGAGATGTCGCTTTTTTCGAGTGTCCTA
TATCATTGTCGTTTCCTCCTTGTATTGGAGAGTACCTTATACGTTTTCCT
TCTGGGTGGTGTTTCTGCCTTGGTGACCACGGGCTGGATTTTGACATCAG
CTTATACGATTATTCAATCAATCAATCAATCAATCAATCAATGTCCAACT
GTTATGGCGCATTACATTGTGCAATGTGTGGTGCAATGTACTGTATGGTG
CAATGTATGGTGTGGATACAAGGCCGGACCCTAAAAGGACTCTCTTGGAG
CTACAGTACTATTAATACGGTACAAACATCAGGTTCAAACCAAATGCTTC
GTAAAACTGGCAGCTTGCTTTGTTTTACCGTGTATTAGTTATCACTGTAT
GTATGTATGTATGTATGTATGGCCATCACATATAGCAGAGTGTGGATCAA
CCGAGTAAGGTTGCCAATCCTGCACGTGGTCAGCTGAGCAGGGAAAAAAA
TAGTATTTCTCTGTCCCCGTTCGCGCCTAAGAATTTGGTCTCGCGAGACG
AGTTCGGCCGTCCCGTCTCGCGTCAGCCTGGTCATTCTCCACACTCAGGC
TGAATCCGGTGCTTACTCACGTGATTCCTCCGGATTTCCGCGGCGGCGTC
CATTTATTTATACCGACATACGCCATCGGGTCAATCACGAGATTATCGAG
TCACGCAATTGCGTACCGATTGCGTTCACTGCCGAGGCTCCACCGGCACA
GGGCCCATCGTCCTTAATGTAATTCCAGTAGCGGATGCTGTCTTTTCAGG
TATCACCATGGACCAATTAATGTGCGCATCTCTTTTTCGACACCCAATAT
TGGGGTACTCTCCGTCCATTCCTACTGAACGATCCCATTGGACGCGATAG
TTCCGTTTCAACGAAAGAAGCCTGTGCGCCCACAAAAACACAGGCCGCCG
GTCGGGCTTCGTCCTTCAACGGCGCAAACTCCGCTGCACAGCGTGCGCGA
GTCCTTGAACTCGTTCCTCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig953:170580..175350-

>mRNA_A-nodosum_M_contig953.27.1 ID=mRNA_A-nodosum_M_contig953.27.1|Name=mRNA_A-nodosum_M_contig953.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig953:170580..175350- (Ascophyllum nodosum dioecious)
ATGAGAAGAGATATTTATGCGCGGCCCCTCGCCGGCGGCACCCGCCGCCC
GATTGCCGTCGCCGTTCGGTCTTCTCGGCAGCGTAGCATTACCACGTCGC
CTTGTTGCCTTACCTTGGCCTCACTTGTACTGGCCACAGGAGGGAATGCG
TGCCATGGGCGATCGAACCTCGCTCTTCAGCCGTATCTACCATCTTTCGT
AAGGTGGGACACAGGCCGCCGGTCGGGCTTCGTCCTTCAACGGCGCAAAC
TCCGCTGCACAGCGTGCGCGAGTCCTTGA
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