mRNA_A-nodosum_M_contig952.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig952.12.1
Unique NamemRNA_A-nodosum_M_contig952.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig952.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig952contigA-nodosum_M_contig952:240110..243431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.3123481-UTR-A-nodosum_M_contig952:240109..2401411680870451.3123481-UTR-A-nodosum_M_contig952:240109..240141Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig952 240110..240141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.3255627-CDS-A-nodosum_M_contig952:240141..2401881680870451.3255627-CDS-A-nodosum_M_contig952:240141..240188Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig952 240142..240188 +
1680870451.338615-CDS-A-nodosum_M_contig952:240478..2406201680870451.338615-CDS-A-nodosum_M_contig952:240478..240620Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig952 240479..240620 +
1680870451.352972-CDS-A-nodosum_M_contig952:243353..2434311680870451.352972-CDS-A-nodosum_M_contig952:243353..243431Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig952 243354..243431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig952.12.1prot_A-nodosum_M_contig952.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig952 240142..243431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig952.12.1

>prot_A-nodosum_M_contig952.12.1 ID=prot_A-nodosum_M_contig952.12.1|Name=mRNA_A-nodosum_M_contig952.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MIQALKNNPGSPALKMNKNKRARFGIASPSKDACLGYIDHFAEVYGQLMP
HENATYLYLGSKQELYDDFAEERRLAGEYTISYPYFTKI
back to top

mRNA from alignment at A-nodosum_M_contig952:240110..243431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig952.12.1 ID=mRNA_A-nodosum_M_contig952.12.1|Name=mRNA_A-nodosum_M_contig952.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3322bp|location=Sequence derived from alignment at A-nodosum_M_contig952:240110..243431+ (Ascophyllum nodosum dioecious)
TTTTCCGACGGGCTTTCGACGTCAGCAACAACATGATACAAGCTCTCAAG
AACAACCCCGGTTCTCCTGCGTTGAAAATGTGAGATTATTTTGAAATCAT
CACTCTCTACATAATATGGCGGTGTTTATGATTTGATCGGCAAATTGATT
CGATCTGAAAATGTGTACATACATGCATGATATGACCAGCCTCTCTCTCG
GTGTGAACGCCTTCTGTACGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGGCTTTGTTGCGTGCATGACGTAGCACGCAACCCTCTTACCTTGAACT
TGTACCGATCCAAGTGCAGCGCACATACATACTCAGAGATATGTCGCATT
GCCGCTTAATTTCTTGCAGGAACAAGAACAAGCGGGCTCGATTCGGCATA
GCATCTCCTTCCAAGGATGCGTGTCTAGGTTACATCGATCACTTCGCAGA
GGTGTACGGTCAGCTGATGCCGCACGAGAACGCAACGTATCTCTACCTCG
GCAGCAAACAGGTGAGGCCCGTCTTTTTTGTTTTTCGAAGAAAGATCAAA
ACGCGCCTATTTTGAAATGAGTATAGTACCTACTCTTCTACAGAATCTTC
TAGGGTTATGAAAGTACAGAGTTATAATAATTTCACAATACGCTGAATGT
GAGAAACTACAACAGGGTACCGGCGGTTGGGTCATGGAAAAGTTAAATAA
TTAGTACAGGATGTAAATAGTTTTTACTTTGTTCTTGAGCCTGATGACGG
CGATGCTTCGCCCTTCTTCCTCACTCAACGTTTCTGCCACACAAGACACT
CTGACAAGCCTGAGGTCCAGCCTGTGAGTGAGCCTGAGAAACTGCATAGT
TGTGTCCTGTTCTGAGTCAGAGTTGGGCAAGCCTGAAGTAGACTTTAGTG
TGGTTGCCACTTTAGCTGCGATCGTAATGTGTAACGGGCAAGCTTGAAGT
AGATTATAGTGGTCGTATTACAAGTTAGTTCAGCTGCGTTGTTAGCGAAA
CTTCGTATCGTCTTTTGTGCTCTTTTTATGTGTGGAAAAACTAGTAAAAT
ATATAGTGTAGGACCTTATTACCTGAGACATTCCAGCCGGTTTACCCAGA
CGCGTGCTCTACACGCTGAGGGAGGAGCCGTACCAATAAGTAAAAAGGTA
ATCAGGTGACACAGGAATTACGAACTCGTGAGAGAGGTCTCAACACCTAG
GTAGACCTCCCACGATCCCTCGTTTATGTCTTTACATTAAAAACCGTTCT
GACCGCTATCCAAAGAAACGTATTTCCAGTGTCACAAACAAAAGCTATCA
AATCACACGTATGAATAGTCCACCATACTCGGGACGAATCCCGTACGTAA
GCACCAGATTCAGCCTGGGTGTGGAGATGAACAGGCTGACGCGGGACAGG
ACGGCTGAACCCGTCTCGCGAGACCAAACTCTCAGGCACGCACAGGGACA
GGGGATTATGCTTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACC
TTACCGGTTGATCCATACTCTGCCATATGGATGACCATACATACATACAT
TGTGATAGCATTGGAGCTCGTGATATATTTATGGGGGACGGCAGTTCGGA
ATGAAAGAGTACCCATGTCGGGCTTCGCTGGACGTGTACACTACTCATGA
AATATGTACAAGCCATTGATCCCACCTAAACGTTTCGATATTTTTTCACC
CATAATAACCGGGGGATGCTCACAAGTTCTAAGTGTGCTTCGATTTTTCT
TTAAAAAGGGCCTCTCTGTTCCCCTTTCAATCCTTAACCCAAAATACAAC
ACGTAAAAAAAAGTTGAACATGTACTGAACAATATTGTATGAAGTTTCCT
ATGGTATAGCGGGCGTGCTGTTGAATGGTAATGTTTTGTCATTTTTTTTA
TACCATGCTTGTTCGTGTACTACATTGCCTCTGTTTGTTTTTACTGGGGG
ATGCTCAGAAGGTCTAGGCGCGTTCTGATTTACCTTTAAATACCATGTCA
TGTAGTGGCTTTGTATTTATAGCCCATCATGTTATAGTATATTATTGCTA
CCATGTGTGATATTGTGCTACATTGTTTTGGTTTTACTGTATTTTCTTGT
ATGTTGCATGGCGGTTAATGTAAGCTTACAGTATTACGGGGGGCTTCTCC
CCGACATTATTATACTGTTGACCCAAGGTAATTTCCATCGGGGAACCCGT
TAATACAACATGAAGAGGTTTTGCTTTTGCAGCCTTTGCTCCCACTCACT
AAACGTCTTAAAATCCCCCCCCCCCCCCCCCCCCGCCCCTTGACTGGGGG
ATGCTCAGAAGGACGTTATAGTTGTAATAGTGTACGATCATAAGTGTCAC
CGAATGTAAGAACGTTGTGTTCTTACACGGTTGGCAACAATGTTACATAA
CGTTTTACTCCACGCCCATAAGGACGTTATACTGTGTTAGCTACATGCAT
TCAGTAATAAGTGTTTGTATTGTTCTCTATGTGTTAGGTTTGGGCCAGCA
GGATGATTAGTAAAGGACATGTAATGAAAGTGGTAGATACATATGGTTTT
GTTTCTCGTATTCAGCGCATTGGTTGCCAACCCGAACAACTACTTTACTC
CGGGCCAATCCCGCTCGTGGTCTACTGATCAGGGAAAAAAAGGAAATAGA
AAAAGTCTATCAGTGCCCCCCCCCCCGCGCTGCTCGTTCGGAGGAAACAA
TCAGAAAATCACGCCACGCATCTACATGCGCCTAGGCGCAACGCAGGTCT
CGTTCCGTCTCGCGCCTGCACAAAGATTCCTTCGACTTGTCGACTGGGCC
AATTGGTGTCGCTTCGGAAGATTCTACGCTTCTGTGTGCGATGACAACTT
CACCAGTCTATCTGCCTCTCTCTTCTTCTGGCGATGTCTCGCCGCCCGTC
TATCTCTTCTTTCCTTCACGCGGCCATGAACCTCCGCCCGCCCTCCGCGA
CAGTTTCAACTCACACCTCAGCCTATAACGCCGTCGCTTTCCATCCCGCT
ATGCCGAACGCCCGGATGTCGTTCTACTTAGGTGGTGGTGCCGGCTAGTA
TGTTTTTTTCTCTACACATTTCCACCGAATCCCGTGCTGCCTTATTGGCG
GTCGTTGCTTGATCTTGACTATCAATCAAGAACAATATCCAGCAGAGTAG
ACGCGTACTGTACACAATAACTCATGCGGCCGAGAGCTGTCGTAGACGCG
GTTATCTTACTCTCAACCGCCGTCCTCGACGTTGCCTTTCTTAGGAACTG
TATGATGACTTTGCCGAGGAAAGGCGTCTGGCAGGCGAATACACGATCAG
CTACCCCTACTTCACCAAGATT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig952:240110..243431+

>mRNA_A-nodosum_M_contig952.12.1 ID=mRNA_A-nodosum_M_contig952.12.1|Name=mRNA_A-nodosum_M_contig952.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig952:240110..243431+ (Ascophyllum nodosum dioecious)
ATGATACAAGCTCTCAAGAACAACCCCGGTTCTCCTGCGTTGAAAATGAA
CAAGAACAAGCGGGCTCGATTCGGCATAGCATCTCCTTCCAAGGATGCGT
GTCTAGGTTACATCGATCACTTCGCAGAGGTGTACGGTCAGCTGATGCCG
CACGAGAACGCAACGTATCTCTACCTCGGCAGCAAACAGGAACTGTATGA
TGACTTTGCCGAGGAAAGGCGTCTGGCAGGCGAATACACGATCAGCTACC
CCTACTTCACCAAGATT
back to top