mRNA_A-nodosum_M_contig95.40.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig95.40.1
Unique NamemRNA_A-nodosum_M_contig95.40.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig95.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig95contigA-nodosum_M_contig95:883367..884291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size256
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870449.0189273-UTR-A-nodosum_M_contig95:883366..8834361680870449.0189273-UTR-A-nodosum_M_contig95:883366..883436Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig95 883367..883436 -
1680870449.0682855-UTR-A-nodosum_M_contig95:884288..8842911680870449.0682855-UTR-A-nodosum_M_contig95:884288..884291Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig95 884289..884291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870449.0342307-CDS-A-nodosum_M_contig95:883436..8835441680870449.0342307-CDS-A-nodosum_M_contig95:883436..883544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 883437..883544 -
1680870449.050371-CDS-A-nodosum_M_contig95:884213..8842881680870449.050371-CDS-A-nodosum_M_contig95:884213..884288Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 884214..884288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig95.40.1prot_A-nodosum_M_contig95.40.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig95 883437..884288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig95.40.1

>prot_A-nodosum_M_contig95.40.1 ID=prot_A-nodosum_M_contig95.40.1|Name=mRNA_A-nodosum_M_contig95.40.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MDRLFRPSRPRALSLTGPPWCNLRHRVIFCTSRRSASSRTGGDATAHIII
ETPGSDSLAR*
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mRNA from alignment at A-nodosum_M_contig95:883367..884291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig95.40.1 ID=mRNA_A-nodosum_M_contig95.40.1|Name=mRNA_A-nodosum_M_contig95.40.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at A-nodosum_M_contig95:883367..884291- (Ascophyllum nodosum dioecious)
CGCATGGATCGTCTGTTCCGTCCAAGTCGTCCTCGAGCTCTTTCACTGAC
CGGGCCACCCTGGTGTAATTTGCGCCACCTGGTAAGTCGCGCGTACCTAG
TGCTAGTGTTGTAGGAAATATTACTGTACCTGGTAGTTACCTACACAGTG
CATTCGTAGCGCAGTCGGACAGCAATGAGGGTGATGTTTGGACTGCCGCC
AGCGGCGTGTCGTGCCACATGACGCACAACGGGACTAGAATAGATACTTG
GAGGCCCTCTCCGCCCGATCGCGAACAATCACGATCGGGGACCGACGGAA
AATTAAAGTAAAGATGTCGGAAATATGGATGTAACTTTCCACGGGCAGAC
TGACGAGAGGATCACGTTGATCGACGTTTCGTACGTTACAGGCTTAGGAT
TTAACCTGTACTCTCTGCATGCCGTCCAGAGAACACATCTGATAGTATCG
GACGCTTCTGGAACGCACATCATAGGCACAATTCTAACGTTCCCCCGCAG
CAGTAGCTCAGATAATATTTTACGTGCTACCCGGCTCCCCGTTGGGGACT
GTTAGAGCAAGAAAAAGGCAGCAAGACGTACGCGCAACAAACCTTTTAAG
GTATTAGCAATATTCCCTTCCATATCCGCCTTCGCGCGACGCCACCTGGC
ACTACTCGGAAGCACCATGGACCACTCTGATTCAGACTGCGCGAATAAAA
CCGCCGAGGACTATCTACGTCCCCATGCCAAGATATGTGTCCATCACCGG
GTCATCTTCTGCACAAGCCGCCGCTCCGCCAGTTCCCGCACCGGGGGCGA
CGCCACCGCCCACATCATTATCGAAACCCCCGGTTCCGATTCCCTCGCCC
GTTAGCTTCAAAATAAAATACGAGGGACACGTGGAGATGCCCGGGAGGAC
GCGGGGCGAGACCCGTGCAATACGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig95:883367..884291-

>mRNA_A-nodosum_M_contig95.40.1 ID=mRNA_A-nodosum_M_contig95.40.1|Name=mRNA_A-nodosum_M_contig95.40.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig95:883367..884291- (Ascophyllum nodosum dioecious)
ATGGATCGTCTGTTCCGTCCAAGTCGTCCTCGAGCTCTTTCACTGACCGG
GCCACCCTGGTGTAATTTGCGCCACCGGGTCATCTTCTGCACAAGCCGCC
GCTCCGCCAGTTCCCGCACCGGGGGCGACGCCACCGCCCACATCATTATC
GAAACCCCCGGTTCCGATTCCCTCGCCCGTTAG
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