mRNA_A-nodosum_M_contig95.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig95.33.1
Unique NamemRNA_A-nodosum_M_contig95.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.890e-24
Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLEWKPKGT-TRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            +R SLP M+E+V+PLRE LE    G   RTKRVAS +  + + W+  +  +W+ +++++ +AV L        VLM+PDASD  WG F+TQVP+  + + +PV +M+HEPLGF+SG F+GS
Sbjct:  123 LRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGS 243
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BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.050e-24
Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLEWKPKGT-TRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            +R SLP M+E+V+PLRE LE    G   RTKRVAS +  + + W+  +  +W+ +++++ +AV L        VLM+PDASD  WG F+TQVP+  + + +PV +M+HEPLGF+SG F+GS
Sbjct:  899 LRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGS 1019
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.690e-23
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLEWKPKGT-TRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            +R SLP MAEVV PLR  LE    G  +RTKRVA  +  + +  +  +  AW ++++L+  AV L+       VLM+PDASD  WG FLTQVP+  L  G+PV +MAHEP+GF+SG FKG+
Sbjct:  997 LRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGA 1117
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.910e-18
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLEWKPKGTTR-TKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVS 342
            +R SL  +AEV+ P+R LLE       R TK +A  +    E W+  +  AW S+++L+  AV L+  K  F VLM+PDAS+  WG FLTQVP++ L  G+ V  M HEPL F+S
Sbjct:  650 LRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPKDGFAVLMFPDASEEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLS 764
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-17
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLE-WKPKGTTRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVS 342
            +R SLP +AEVV PLR LLE        RTKR+AS +    E W+  +  AW  +++L   AV L+  +  F VLM+PDASD  WG FLTQV +  L  G+ V +M H+PL F++
Sbjct:  565 LRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRPIESEAWTAGMAEAWTLAQDLAAHAVALS--EGGFAVLMFPDASDEHWGTFLTQVQQGELERGVSVEDMTHKPLAFLT 677
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BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6A4ZJH5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZJH5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.360e-10
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLE--WKPKGTTRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            MR+S+P    VV P+ ELLE  +K  G  RT++  S+   +E  W++   A     +E+L  AV L   K+   + ++ DASD+ WGG +TQ+P   +   +   E  HEPL F+SG F G+
Sbjct:  590 MRMSIPRYNVVVKPITELLEAVYKAAGG-RTRQKVSKVRLAEIGWNDTHAACLAKCKEVLGQAVTLAHPKEDSLICVFADASDMHWGGVVTQIPRGQVDRELESQE--HEPLMFLSGTFSGA 708
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.000e-10
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLE-WKPKGTTRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDAS 240
            +R SLP +AEVV PLR LLE        RTKR+AS +    E W+  +  AW S+++L+  AV L+  K+ F VLM+PDAS
Sbjct:  825 LRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDAS 905
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A485K8C7_9STRA (Aste57867_2784 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8C7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9
Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:    4 RLSLPNMAEVVSPLRELLEWKPKGTTRTKRVASRKVKSEE-NWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            R+S+P    VV P+ +LLE   K      R    KV+ EE  W+E   A     +E+L  AV L   K+   + ++ DASDL WGG +TQ+P   +   +   +  HEPL F+SG F G+
Sbjct:    5 RMSIPRYNVVVQPITDLLEKVYKSAGGRMRQKVSKVRLEEVGWNETHTACLAKCKEVLGQAVTLAHPKKDQLICVFADASDLHWGGVVTQIPRDQVDRELEAQD--HEPLMFLSGTFSGA 122
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: A0A6A4Z9B8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9B8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.380e-8
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLE--WKPKGTTRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKGS 360
            MR+S+P    +V P+ +LLE  +K  G    ++VA   V ++  W+ E  A   S ++ L   V L   K    + ++ DASDL WGG +TQ+P   +   +   +  HEPL F+SG F G+
Sbjct:  996 MRMSIPKYNVIVQPITDLLESVYKAAGGHTRQKVAE-VVLADVGWNAEHVACLTSCKDALGRVVTLAHPKPERLICVFADASDLHWGGVVTQIPHDQVDRELDAQD--HEPLMFLSGTFSGA 1114
[Close]
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Match: W4F8K6_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F8K6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.790e-8
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    1 MRLSLPNMAEVVSPLRELLE--WKPKGTTRTKRVASRKVKSEENWSEEIQAAWQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGIPVVEMAHEPLGFVSGGFKG 357
            MR+S+P    +V P+ +LLE  +K  G  RT++  ++ V ++  W+ E  A   S ++ L   V L   K    + ++ DASDL WGG +TQ+P   +   +   +  HEPL F+SG   G
Sbjct:    1 MRMSIPKYNVIVQPITDLLESVYKAAGG-RTRQKVAKVVLADVGWNAEHVACLTSCKDALGHVVTLAHPKPERLICVFADASDLHWGGVVTQIPHDQVDRELDAQD--HEPLMFLSGATMG 118
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig95.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE2.890e-2445.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE3.050e-2445.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.690e-2348.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE1.910e-1844.35CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1I2_9PHAE1.170e-1745.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZJH5_9STRA4.360e-1036.89Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6H5K9E0_9PHAE8.000e-1046.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485K8C7_9STRA1.370e-936.67Aste57867_2784 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A4Z9B8_9STRA3.380e-834.43Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4F8K6_9STRA3.790e-833.88Chromo domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig95contigA-nodosum_M_contig95:760670..761029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra77456
PFAMsRVT_1
Model size360
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.72e-06
EggNOG OGsCOG2801@1|root,2T1TU@2759|Eukaryota,3QHRM@4776|Peronosporales
Descriptiontransposition
Cds size360
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.3162534-CDS-A-nodosum_M_contig95:760669..7610291680870450.3162534-CDS-A-nodosum_M_contig95:760669..761029Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 760670..761029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig95.33.1prot_A-nodosum_M_contig95.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig95 760670..761029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig95.33.1

>prot_A-nodosum_M_contig95.33.1 ID=prot_A-nodosum_M_contig95.33.1|Name=mRNA_A-nodosum_M_contig95.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
MRLSLPNMAEVVSPLRELLEWKPKGTTRTKRVASRKVKSEENWSEEIQAA
WQSSRELLEDAVQLNFRKQVFRVLMYPDASDLFWGGFLTQVPEKNLVSGI
PVVEMAHEPLGFVSGGFKGS
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mRNA from alignment at A-nodosum_M_contig95:760670..761029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig95.33.1 ID=mRNA_A-nodosum_M_contig95.33.1|Name=mRNA_A-nodosum_M_contig95.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig95:760670..761029+ (Ascophyllum nodosum dioecious)
ATGCGACTGTCTTTGCCTAACATGGCTGAGGTCGTATCGCCACTGAGGGA
ATTATTAGAGTGGAAGCCAAAGGGCACCACTCGCACTAAGAGGGTTGCGA
GTCGTAAAGTGAAATCGGAGGAGAACTGGTCGGAAGAAATCCAGGCGGCG
TGGCAGAGCTCCCGCGAGTTGTTGGAAGATGCGGTGCAGCTTAACTTTCG
CAAGCAGGTCTTTCGCGTGCTTATGTATCCAGACGCGAGCGACCTGTTTT
GGGGAGGCTTTCTGACGCAAGTCCCTGAGAAGAATCTGGTGAGTGGGATT
CCGGTGGTGGAGATGGCTCATGAACCGTTGGGTTTTGTCAGCGGAGGGTT
CAAAGGGTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig95:760670..761029+

>mRNA_A-nodosum_M_contig95.33.1 ID=mRNA_A-nodosum_M_contig95.33.1|Name=mRNA_A-nodosum_M_contig95.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig95:760670..761029+ (Ascophyllum nodosum dioecious)
ATGCGACTGTCTTTGCCTAACATGGCTGAGGTCGTATCGCCACTGAGGGA
ATTATTAGAGTGGAAGCCAAAGGGCACCACTCGCACTAAGAGGGTTGCGA
GTCGTAAAGTGAAATCGGAGGAGAACTGGTCGGAAGAAATCCAGGCGGCG
TGGCAGAGCTCCCGCGAGTTGTTGGAAGATGCGGTGCAGCTTAACTTTCG
CAAGCAGGTCTTTCGCGTGCTTATGTATCCAGACGCGAGCGACCTGTTTT
GGGGAGGCTTTCTGACGCAAGTCCCTGAGAAGAATCTGGTGAGTGGGATT
CCGGTGGTGGAGATGGCTCATGAACCGTTGGGTTTTGTCAGCGGAGGGTT
CAAAGGGTCT
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