mRNA_A-nodosum_M_contig944.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig944.32.1
Unique NamemRNA_A-nodosum_M_contig944.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig944.32.1 vs. uniprot
Match: D8LES7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES7_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.490e-60
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 1 
Query:  406 ANVGTNIAGGNGPAYVVCALPYRADVNQGANWGLDTALAIVEEAVDAFDPPRIEARPVRTNWPPELQDRAKSMMDTFELMRSAYFTRGSNSLPDLHESVPRIDDNFYMWLACRKQQWRKHRTDKRASRQLTPEED 810
            A V TNIA G GPAYV+CALPYR D  +  +WGLDTALAIVEEAV+AFDP R++ARP RT+WPPELQD+AK++ DT ELMRSAYF RGS+SLPD+ E VP+I+DNFYMWL+ RKQQWRKHR DKR  R+LTPEED
Sbjct:    3 AAVATNIASGQGPAYVLCALPYRTDAER-EDWGLDTALAIVEEAVEAFDPQRMQARPARTSWPPELQDKAKAL-DTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRVGRKLTPEED 135
[Close]
BLAST of mRNA_A-nodosum_M_contig944.32.1 vs. uniprot
Match: A0A6H5KM78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM78_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.640e-57
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:  406 ANVGTNIAGGNGPAYVVCALPYRADVNQGANWGLDTALAIVEEAVDAFDPPRIEARPVRTNWPPELQDRAKSMMDTFELMRSAYFTRGSNSLPDLHESVPRIDDNFYMWLACRKQQWRKHRTDKRASRQLTPEE 807
            A V TNI  G GPAYV+CALPYR D  +  +WGLDTALAIVEEAV+AFDP R++ARP RT+WPPELQD+AK++ DT ELMRSAYF RGS+SLPD+ E VP+I+DNFYMWL+ RKQQWRKHR DKRA R+LTPEE
Sbjct:    3 AAVATNITSGEGPAYVLCALPYRTDAER-EDWGLDTALAIVEEAVEAFDPQRMKARPARTSWPPELQDKAKAL-DTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRAGRKLTPEE 134
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig944.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES7_ECTSI2.490e-6073.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM78_9PHAE3.640e-5773.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig944contigA-nodosum_M_contig944:283732..288154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1470
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005420.1
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.6400568-UTR-A-nodosum_M_contig944:283731..2841271680870441.6400568-UTR-A-nodosum_M_contig944:283731..284127Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig944 283732..284127 -
1680870441.6853611-UTR-A-nodosum_M_contig944:287752..2881541680870441.6853611-UTR-A-nodosum_M_contig944:287752..288154Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig944 287753..288154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.6508527-CDS-A-nodosum_M_contig944:284127..2843831680870441.6508527-CDS-A-nodosum_M_contig944:284127..284383Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 284128..284383 -
1680870441.6624432-CDS-A-nodosum_M_contig944:285556..2857561680870441.6624432-CDS-A-nodosum_M_contig944:285556..285756Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 285557..285756 -
1680870441.6741505-CDS-A-nodosum_M_contig944:287536..2877521680870441.6741505-CDS-A-nodosum_M_contig944:287536..287752Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 287537..287752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig944.32.1prot_A-nodosum_M_contig944.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig944 284128..287752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig944.32.1

>prot_A-nodosum_M_contig944.32.1 ID=prot_A-nodosum_M_contig944.32.1|Name=mRNA_A-nodosum_M_contig944.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=224bp
MANVGTNIAGGNGPAYVVCALPYRADVNQGANWGLDTALAIVEEAVDAFD
PPRIEARPVRTNWPPELQDRAKSMMDTFELMRSAYFTRGSNSLPDLHESV
PRIDDNFYMWLACRKQQWRKHRTDKRASRQLTPEEDFPRWLRQRKWHWKA
SKMERESKNTPPLEEDFYLWLSERKKVWRLQRLTKRHAGGRNLLSERVIH
DHGGDNGLGGGPGAMMRALEAEA*
back to top

mRNA from alignment at A-nodosum_M_contig944:283732..288154-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig944.32.1 ID=mRNA_A-nodosum_M_contig944.32.1|Name=mRNA_A-nodosum_M_contig944.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4423bp|location=Sequence derived from alignment at A-nodosum_M_contig944:283732..288154- (Ascophyllum nodosum dioecious)
TTCAACTAATTTCTACTTGTATATTTTTCGTTGAGCCAGGATACAATCCC
CTTTCGCGGGCCTCGAAAAGGTTGGGTATTTCAACCCTGGTAACCGTCCC
TCATACATCCAAGAGACCCGCGCGTTGCAGCACACGTGACTGGAGCGGCT
CCCGGCGTGATCTTTTGTGAGGCATTGATCCCCATTTGCCCTGAACACGA
GCTCGACCGTTTAATACGAGATTTCTTGTTTGATCCGGTACCCCAGGGTA
CGTCGCCGGCTCCTGCAGGGTTAGTTCAAGGCGACTCCCCTCCAGCAGCC
AAAGTCGTCCCCTCTAACCCTTGGTTATACCTTGTCGACCATAAGCGGAC
GCACTAGAGTGGAATCACTGGCAGGACCGCGGTCTACCCTCGAGCCGTGG
ATATGGCAAATGTGGGGACAAACATCGCCGGCGGTAATGGTCCTGCATAC
GTGGTGTGCGCTCTCCCATACCGCGCCGATGTCAACCAGGGGGCGAATTG
GGGTCTAGACACGGCACTCGCTATTGTCGAGGAAGCTGTGGATGCATTCG
ACCCACCAAGGATCGAGGCGAGGCCTGTACGGACGAACTGGCCGCCGGAG
CTCCAGGATAGAGCAAAGGTGGGTACCCTGTGGACCTGAAGAAGTGACTT
CTTGGTATCTTGGGTTTTGAATCGTACCTCGCATGATGCATACGTATCTT
CGGGATTGGATGCGCCTTAAAGCGAAAATGTGATAGGGTTACTGTTACAC
CACAGGGTAAAAGTCATTTCACCAATACCACTCAGTCCTCTCCACCCACA
GAACTTGACTAGCCGGTGATCAAGCGGACTATATTAGTTATTTCGATAAG
ATTTTGAGTGTTGGAGCACGATCGCTTTCTTCTTCATGTGGAGTACAATT
TTTTCATCTCCAACCGATATTCAGCCCAGGAATTCGGTGAGGTAAACCCG
GTCCCAGTCGACGCCAGTGGGATAAGGATACTAATACACCACAGGGTAAA
AGTCGTTAGACCACTATTACCACTCGGTAATCAAATCAGTCTTTATGACA
ACAAAGCTTAGCGGTGGCACTGAAACTTCCTAGACTGCTGCTGTAGCTAT
CTGGTTTATAGTGCAGCAGTTATGTACTCCTACGTCACGACGATGACTTG
GTGAAGTAAGCAGCTCATTAGACAGTGCTCTCCGTAGCCTGTAATTCATA
TCCTGGATTACTGACAGCACCCCAGACATGAGACGCTGTAGTTTACACCC
CAATGACTTTTTCGTGGTGCGGGTGTACTGTTTCAGTCTTGTTGTCGGTG
GATTATGCCTAACGAAGATTTAGTCGCGATTTTGAATCATTTTTGGTTCG
AGTAGCGGGGTGCCACCATGACGTGATGGATCACCCCTTGAGACCTCCGT
ACCTCTTTGAGACCACTACAAGTATTATTAGCGGGGTTGGCATCTGATAG
GTTAGGGCCGACAATTTATCTCGCCGTAGTCTTCACTTGCAAGGACAATG
TGCTAAAAGTGCGAAATGAATGAATGAATGAATCAAGTGCTGTTGTAGAC
CGCTAACCTCGACACCGTGAGTTTCTTTGATCGCACGAGTTCGCACCTCA
AGAGTCTACTGTACTGTATTTGGAACGACAAATGGTATCCCTCCTGTTTG
ATTAGTAGTGGATAGTGGGTGTGAACTACAACGTTCCTCTTCGAGTAGGT
AGTATGCAGAGTGGTCTAGTAGGTAACCTGCACACCTGCTAGTGCGGAAG
TCGTGAGTTCGATTCTTACCAAAGTAGGATCCGTGTTGTTTCTTTCGTAA
CGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTCGACGAG
TTGTAATAGTGCTGAACTTGCATCGCGATAAAAAAAAAATGTAAGGCGTG
AACCGAGGAGAGATGGGAAGATCCTTTGTGTCCACAGGCAGGATGGTAAT
GATGAGGTCCATCGGCTATAAGTAAAAAAAACGTTGTATCCAGCCAGTCG
TCGTCGCCTGTCAAGAGATTGCACAGGAGCGTCGGTGCTCTCCTTTATGT
GTGCTATGTTCAACACGGTAGGATAAAAATAGAAAATAGAGCTATAATTT
CACGACGGCAGTTTGAACAAAAAATATGTTCTCGCCCCCGCCGGGAAAGT
ATGCAATCGCCATCTACTGTACAGCAGTACGATGCTTGGGATCATTTACC
GGCACGTATTCCACATGTTTTCACGTGGCGTGCAGCTGCATATATTCCCT
GATCGAACTTCCTTACGTGGGTGCAAGCAGTTCCATAACTAATTCCATAA
CTCTGCCATTCATAGCTCGCAGTCGCCTCTTGCGCTTTTTTTTTTCACAA
ACACCCAAACAAAACGCATACACGCACCTGTCGTGCAATATGGAACAGAG
CATGATGGACACCTTCGAGCTGATGCGGTCGGCGTACTTCACGAGGGGCT
CCAACAGCCTGCCCGACCTCCACGAGTCGGTGCCACGAATAGACGACAAT
TTCTACATGTGGCTCGCCTGCCGAAAGCAGCAGTGGCGGAAGCACCGCAC
GGACAAACGAGCGAGTCGGCAGCTCACGCCAGAGGAAGATTTCCCGAGGT
GAGGCAAAGTGCACGCCCAAACGACGGCTGCACTTGGACGGTACGAATTC
AGCGTGTAATAGTGCGCGGCTTTGTTCCCCCCCCCCCCTGCCTCTGTACA
TTCAAGTACTATTACTATTTATGTTACCCCCTGATGTTCTGCCTGTAGCC
TCTGGAACCTGGGGTTCTCAAATTTGAGCAAGCCCAACATGAATGGCCAC
GGGAACCGTCTCCGGTCTAGGGAATTCCGCCAGGGTCGTCAGAAACTGGC
GGCCGCTTGAGCTGAAACTCATGGCTTGCCCCCGAAGCTGTAATCAAAGC
CTACGCCTCCTCGTATACACGAACCAGTACCCGGCATTGTCTTTCGCAAC
CTATCTGGCTTGGTTTTATGTTCAGTATATGCAAGATGTTATTGTTGCAC
TTTTGACTCTTGGCCGCGCAAGCGTACTATTAATATTGCTATTAAGTAGT
ATAACTATAGTGGCCCTCTGCCGATTCCCGGCGACCTTATCTTTCAAAAA
AAAAAATCGGGTGAGACGGATAGTAAACGAGAAAACTCTCTATAGTTGTG
GTATCCCAAATTGAAGTGGAGCTGTCCGCGCAAGGGAAGAAACGCAGATG
GCAGTCATGATTACTGGACTGGCGACCTCTGAGTGAGATCGGGGGCTTGA
CGCATCTCTCCCCCCCCAATTTAGCGCAGTTAATTGCTATCACGAGTTAG
CGCTAGCTTGCGAAGGAGGTTGGATTCTACTTCCAACCGGAGAAAGAGTT
AAGAAAGAGAAATGCCTCCATACTATAATAGTACGTACACCGTTGAAGGA
TACGCACGCAAACCCAAAAATTAAATCCTACCACGAAGTACTTACTAGAA
AAGAGGCACAAAAACATACACTTGAGAGGATATTGCACTCAAGAGACTTT
TTCCAATCAAAATTAGTGTCAAAGAGTGACCCAACATTTTCAAATTTGTG
GCCAAATTCACGCCGGTCCTCAAGAGTGTACGAAACCGTTGCACACCAGG
TGCACGCGATACGAAGCAGCACCCAGCAATCCAAACCACGTGGTGTGACG
GATTCTGACTTATCACCAAGGTGCATTTAGGATATGAAAAGCTACCCTTC
ACAACCATACCAAACGTGCTCTCCAAACATTAGGATTAAAAGACTACTAC
CCTTCCTCTCGTGTCCTCCAGGTGGTTGAGGCAGCGCAAGTGGCACTGGA
AGGCCAGCAAGATGGAGCGCGAATCGAAGAACACTCCTCCTTTGGAGGAG
GACTTTTACCTCTGGCTCTCGGAGAGGAAGAAGGTGTGGAGGCTGCAGCG
ACTGACAAAGCGGCACGCTGGAGGCCGAAACCTTCTGTCGGAGCGAGTCA
TCCACGACCACGGGGGGGACAACGGTCTCGGAGGGGGACCGGGGGCAATG
ATGCGCGCGCTCGAAGCGGAGGCTTAAGCGACGATGTTGGGCCTCCCTTC
TGCTTGCTCTCTCGCAGTTTTTTTTGCCGAAAACCGAGAAAACGTGACGT
GTTAAATGGTTCTGTGGCAAAAATGATGGACGGTGGTCATCTATCAAAAT
AGTATGCAGCAGGGATATCGTATCCCCGTATTCATTCGTTTTGTATAATA
TGCGTGAAGTGGTGTTGATATTATGATTATGGTGAGAAAAAGTGGCGGGG
AGGGGCAGATGCAAAAAGTGTCTTCGCTGGGCAGGATGTGTGTTTCGCGC
TAGTCATGTTACCAATATAGCAGCAGCAATGACAAATGTTGAATGCGTTT
CCTCAACGTGTACATCGATCAATAAGATTCCGAGCGTTTTTTCTCGAGTA
GCCATAGTGCTTTTCTTCCCCCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig944:283732..288154-

>mRNA_A-nodosum_M_contig944.32.1 ID=mRNA_A-nodosum_M_contig944.32.1|Name=mRNA_A-nodosum_M_contig944.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at A-nodosum_M_contig944:283732..288154- (Ascophyllum nodosum dioecious)
ATGGCAAATGTGGGGACAAACATCGCCGGCGGTAATGGTCCTGCATACGT
GGTGTGCGCTCTCCCATACCGCGCCGATGTCAACCAGGGGGCGAATTGGG
GTCTAGACACGGCACTCGCTATTGTCGAGGAAGCTGTGGATGCATTCGAC
CCACCAAGGATCGAGGCGAGGCCTGTACGGACGAACTGGCCGCCGGAGCT
CCAGGATAGAGCAAAGAGCATGATGGACACCTTCGAGCTGATGCGGTCGG
CGTACTTCACGAGGGGCTCCAACAGCCTGCCCGACCTCCACGAGTCGGTG
CCACGAATAGACGACAATTTCTACATGTGGCTCGCCTGCCGAAAGCAGCA
GTGGCGGAAGCACCGCACGGACAAACGAGCGAGTCGGCAGCTCACGCCAG
AGGAAGATTTCCCGAGGTGGTTGAGGCAGCGCAAGTGGCACTGGAAGGCC
AGCAAGATGGAGCGCGAATCGAAGAACACTCCTCCTTTGGAGGAGGACTT
TTACCTCTGGCTCTCGGAGAGGAAGAAGGTGTGGAGGCTGCAGCGACTGA
CAAAGCGGCACGCTGGAGGCCGAAACCTTCTGTCGGAGCGAGTCATCCAC
GACCACGGGGGGGACAACGGTCTCGGAGGGGGACCGGGGGCAATGATGCG
CGCGCTCGAAGCGGAGGCTTAA
back to top