mRNA_A-nodosum_M_contig944.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig944.27.1
Unique NamemRNA_A-nodosum_M_contig944.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig944.27.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.450e-76
Identity = 126/220 (57.27%), Postives = 159/220 (72.27%), Query Frame = 2 
Query:  323 GSLAVAAPGTSSFLS*INAVAIMGIXXXXXXXXTV-SALTFLHWKMYRCFAGYAHTYSASYYRSRLTYYGFLITMTGAVQLALGAYVLDKLGGGPLAAPVITGAFFILWPELSIFVGAMQLVLGFMTLYRSTTPGVGPSTSNRDSMLSVYQMISWFVFVASVGCQVLGQIHSFMVPTPAIFLLNIVGFSLFPMYLDVMAHTTPENVTKDMFSMSKTMGPG 979
            G L +  P  S     IN++A+MGI        TV  ALTFL WKMYR F G A TYSA+YYRSRL YYGFL  M GA+Q+ALG++V    G G L +PV++G FFILWPELSI VG  Q++ GF  LYRSTTPGVGPST N+D+ +  +Q+++W VF+ S+G QVLGQ+       PA+F+ N++GF+LFP+YLDV++HTTPENVT DMFSMSKT+G G
Sbjct:  132 GPLQILHPTISVSQGEINSIALMGILGFWGYAGTVIGALTFLQWKMYRFFQGGASTYSATYYRSRLGYYGFLSLMVGALQVALGSFVEGMFGWGQLPSPVVSGPFFILWPELSITVGVCQVLFGFYILYRSTTPGVGPSTGNKDAGMFKFQVVAWSVFLISMGAQVLGQVSLAASAMPALFIRNVIGFALFPIYLDVLSHTTPENVTPDMFSMSKTVGSG 351
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BLAST of mRNA_A-nodosum_M_contig944.27.1 vs. uniprot
Match: D8LET4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET4_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 7.590e-20
Identity = 65/187 (34.76%), Postives = 95/187 (50.80%), Query Frame = 2 
Query:  431 ALTFLHWKMYRCFAGYAHTYSASYYRSRLTYYGFLITMTGAVQLALGAYVLDKLG----GGPLAAPVITGAFFILWPELSIFVGAMQLVLGFMTLYRSTTPGVGPSTSNRDSMLSVYQMISWFVFVASVGCQVLGQIHSFMVPTPAI---------FLLNIVGFSLFPMYLDVMAHTTPENVTKDMF 952
            AL  L++KM+   +     ++  +Y++ L + G L  + G VQLALGAYV DK+       PL A  ++G   + +  L+I  GA QLVLG   + R+T      S  N    L  +Q  +WFV V S+  QVL Q+      T  +          +  +VG  LFPMYLD M +TTPE + ++ F
Sbjct:  164 ALVHLNYKMFMYQSDQWVGFNRGFYKTALMFVGLLTLLAGTVQLALGAYVFDKVDEDRLSSPLGAIFLSGPLLVTYSRLAIAFGAFQLVLGCYIMVRATQKPSSGSGENAKG-LQAFQFAAWFVLVLSICIQVLSQVTMSSTSTNIVDRYAGFAAQAVAYVVGLGLFPMYLDAMYYTTPETIDQNDF 349
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BLAST of mRNA_A-nodosum_M_contig944.27.1 vs. uniprot
Match: A0A7S2UB49_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB49_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-17
Identity = 68/205 (33.17%), Postives = 98/205 (47.80%), Query Frame = 2 
Query:  371 INAVAIMGIXXXXXXXXT-VSALTFLHWKMYRCFAGYAHTYSASYYRSRLTYYGFLITMTGAVQLALGAYVLDKLGGGPLA-APVITGAFFILWPELSIFVGAMQLVLGFMTLYRSTTPGVGPSTSNRDSMLSVYQMISWF-VFVASVGCQVL---GQIHSFMVPTPAIFLLNIVGFSLFPMYLDVMAHTTPENVTKDMFSMSKT 967
            IN VA MG+          + +L F+ + +Y   +G  +  ++SYY  R   Y FL+ + G  QLALG++VL  +G GPL   PV  G + I +PE+S+FVG +Q+++GF  L R     VG      D    +   I W  + V  +  QV    G +     PT A     I G +  P YLD    TTP  +    +SM  T
Sbjct:  142 INFVAAMGMLGIIAHGAAYIGSLAFMEFALYAYQSGKTNDRNSSYYLGRSGLYNFLVVLAGFSQLALGSFVLHSIGNGPLTEGPVNVGVYTIYFPEISVFVGLVQILVGFFGLARRMGKLVG---GKDDHSFQIACGIMWICMLVLELMVQVAYAPGPMMGGAAPTRACI---IFGLAFMPAYLDAKTRTTPAELPPSYYSMEDT 340
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BLAST of mRNA_A-nodosum_M_contig944.27.1 vs. uniprot
Match: K0TGC2_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGC2_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-11
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 2 
Query:  443 LHWKMYRCFAGYAHTYSASYYRSRLTYYGFLITMTGAVQLALGAYVLDKLGGGPLAAPVITGAFFILWPELSIFVGAMQLVLGFMTLYRSTTPGVGPSTSNRDSMLSVYQMISWFVFVASVGCQVLGQIH-------SFMVPTPAIFLLNIVGFSLFPMYLDVMAHTTPENV 937
            + + M+   AG     S  Y+R R   Y  L+ + G VQLALG+++++  G GPL AP+    F +  PE+S+ +G +Q+++  + + RS      P     DS+   +Q + +F++   +  QVL Q+        +   PT A   L   G +L P +LD   +  PE++
Sbjct:  163 MSFSMHSIQAGKPQDRSGVYFRGRAKLYNGLLFLAGLVQLALGSFIINTYGNGPLEAPIFAVVFLVFSPEISVTIGLLQMIVSTIGIVRSLREKPAP-----DSVW--FQTLCFFMYFCMMSMQVLAQVAQAPGDAAASAAPTLACVYL---GIALMPAFLDWKMNNLPEDL 324
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig944.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LES9_ECTSI6.450e-7657.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET4_ECTSI7.590e-2034.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UB49_9STRA2.500e-1733.17Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0TGC2_THAOC1.360e-1129.07Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig944contigA-nodosum_M_contig944:221040..224765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LES9
Model size1113
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.7e-82
EggNOG OGs2E0GM@1|root,2S7X1@2759|Eukaryota
Cds size597
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig944.27.1prot_A-nodosum_M_contig944.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig944 221428..224283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.3624568-UTR-A-nodosum_M_contig944:221039..2214271680870441.3624568-UTR-A-nodosum_M_contig944:221039..221427Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig944 221040..221427 +
1680870441.4489381-UTR-A-nodosum_M_contig944:224283..2243381680870441.4489381-UTR-A-nodosum_M_contig944:224283..224338Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig944 224284..224338 +
1680870441.4615023-UTR-A-nodosum_M_contig944:224692..2247651680870441.4615023-UTR-A-nodosum_M_contig944:224692..224765Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig944 224693..224765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.3813546-CDS-A-nodosum_M_contig944:221427..2214671680870441.3813546-CDS-A-nodosum_M_contig944:221427..221467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 221428..221467 +
1680870441.4007819-CDS-A-nodosum_M_contig944:222743..2228841680870441.4007819-CDS-A-nodosum_M_contig944:222743..222884Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 222744..222884 +
1680870441.4120152-CDS-A-nodosum_M_contig944:223197..2233071680870441.4120152-CDS-A-nodosum_M_contig944:223197..223307Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 223198..223307 +
1680870441.4267354-CDS-A-nodosum_M_contig944:223517..2237461680870441.4267354-CDS-A-nodosum_M_contig944:223517..223746Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 223518..223746 +
1680870441.438535-CDS-A-nodosum_M_contig944:224206..2242831680870441.438535-CDS-A-nodosum_M_contig944:224206..224283Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 224207..224283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig944.27.1

>prot_A-nodosum_M_contig944.27.1 ID=prot_A-nodosum_M_contig944.27.1|Name=mRNA_A-nodosum_M_contig944.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=199bp
MGILGFMGYAGTVSALTFLHWKMYRCFAGYAHTYSASYYRSRLTYYGFLI
TMTGAVQLALGAYVLDKLGGGPLAAPVITGAFFILWPELSIFVGAMQLVL
GFMTLYRSTTPGVGPSTSNRDSMLSVYQMISWFVFVASVGCQVLGQIHSF
MVPTPAIFLLNIVGFSLFPMYLDVMAHTTPENVTKDMFSMSKTMGPGA*
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mRNA from alignment at A-nodosum_M_contig944:221040..224765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig944.27.1 ID=mRNA_A-nodosum_M_contig944.27.1|Name=mRNA_A-nodosum_M_contig944.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3726bp|location=Sequence derived from alignment at A-nodosum_M_contig944:221040..224765+ (Ascophyllum nodosum dioecious)
ATTTTGTTCCGCCCTGAAAGCTTTGGTACACCACACCGTATACGTTCCTC
TGATATGTTCCTGTCCACCAGACCACATACTGTACCTGTACACATTTTGA
GAAATACTATAGATCGAAAGGTTGATGACACCGGGAACTGGTGATGATAC
TTCTTCCGCATGATGAGCTCTGGAGCTACATATCCTTGGCCTGATTTTTC
TTTAAAATACGACGTTTATCTGAATGCCTTTACCGTATGTTGCATTATTT
CTTGCGGCCAACTTGTCAACTCGTATTATCTGTAATAGTACTCACTCGTA
TTATTCCGACCCCACAACTTTCGGTTCGCTTGCTGTTGCTGCTCCCGGCA
CGTCTTCTTTCCTCTCGTAGATTAACGCTGTCGCCATCATGGGCATCCTG
GGCTTCATGGGCTACGCAGGCACGGTGAGTGGAGGACACGGCTTCTCGGA
CGCACCAAATCTTACCTTACCTTACCTCACCTTAAATACCGACCGTACTC
CTATCGGCTTCCCAAAATCCGAACAGAGAGAACGCATCGTGTACCCGAGG
TCGTGTGAGTCTCATGGAACACAAGGGTATATTAAGTGCTAGATATTGAA
CGCGATGATGGAGGGTATAAAATAGGGAAGTGGTATGAGGTAGTATGCAA
CAACGTGTGATCGTAACTGTTATATAAACTATTGGAGGTTACGTGTACTG
GTGGTAGCTCTAACTAGACATGCGTGTGTCTTACCCACTGGGCCCCAACG
GCTCTTGAAACGGACAAGGATAGGCCCTTGTAACCCCGATTGTCCGACAG
CAAAAAATACTGCTGTGGTCTATATACTCGTATTTTGTGCTATTAGTCTA
ATATTTACTACAGCACTCCTCATTAGACTAATCATTAAGGTGGCGGGTTG
GGGTTCCGAATTTCGGTTACTAACAGTAGGTGTCATTTTGAAGACTTGCA
CTCTCAATTCTAGAAGACGTGGAAAGGCACCTCGTGTACTGTTTGCAGAG
GGATATACAAAAAGTAAAAATCATTCTGACTTGACGAGACCTTTATTTCC
TCCCATTTCACGTATCCCGATCGCTGTTTCGGACGAACGAACGAACGCTC
CCCCTTCGTGCACGAACGCCGGCGACGCTATCGGTGCTATGCTGCTCGGT
CGACTTCCACAGGTTATCGGTAAGTCGGAGAACTCAAGCTCTTCTGATTA
TTTGTGTACTTGGAGCAAAACCTCTAGGCCTAACGTGCTGCACGTGAAAT
TACTTTTTGGGGTTTTGAAGCTGGGTGTATTCGTGCATCAAGTCTCGAGA
TATTTTGAGGAGGAAGCAGATGATGTGTGGAGCGCAAAAATCACAGTGAG
CTACAGTCTTGTGAACTCCCATTCTAAAAAAACGACACGACCTTTTTGGC
GAAGCGAACTCGCAGCCCAGTTACGCGATTCGTACGGCAGATCAGAACGA
TTTCTCCTTTTTTCCCCTGATATATTTTTGCATTTTATTTTGTACCAGGT
ACTGTATCGTATGGGTCCATCGCTGTTTTCTGGCAAAAGGGATAGGGGAA
TGAAGATATTAGGGGATTTGATTTATACACCAATGAGAATGTGCTCGCTA
ATAATTAACTACTACACGTACTACTGAGAGTCTCGAGTCTCGAGTAACGC
GATCCGTGTACCACACTCGCTTCTTTCGTGCTCGCCTCCCGTGTGCGTCT
CCAGGCGCCCTCACTTTCCTCCACTGGAAGATGTACCGCTGCTTCGCCGG
CTACGCTCACACCTACAGCGCCTCTTACTACCGCTCTCGCCTCACCTACT
ACGGATTTCTCATCACCATGACCGGGGCCGTACAGCTTGCTCTCGGTGAG
AGAGCTAACCCAACCATTTCGTGCTGCTGGTGGTTCCGATTTTTATATCG
TAGAAATCGGTGGAAATATCAGAACGGCGAGAACCCGCGGCGGGTGCCTT
TGGCGTCTTGAGAGTTCCGACAACTCCAGCTCGACTAACGGTTCATGATT
TGGGGTGCCTTTGGTGTCTTGAGAGTTCCGACAACTCCAGCCCGACTGAC
GTTCCGTGATTTGGAGCAATCGTTTTCACTTGTTATTAGTGTCAGTTGAC
CGAATTCTGAAACGCCTTCAATGTTTCCGAATGCTGTCGCTCCGGAAACC
CTCTGCAGGCGCTTACGTTTTGGACAAGCTTGGAGGCGGCCCGCTCGCCG
CTCCCGTTATTACCGGCGCCTTTTTCATCTTGTGGCCCGAGCTGAGCATC
TTCGTGGGAGCTATGCAGGTAAATCACCTACCACCGTAATTTGATATCCA
AGGCCACATCGTTTTAGAAGAAAAAAAACTGTAAAAGGGGGAGGAGTACT
TGTAGTGATCCCCTTACGACGACGCGTCGATCCCCGAGTCACTGTTACCT
CTTCCTTGACCCTTCCTTCCCCCCTCCCCGTCGCCGTTTCGCATTGTATT
GCATGTTATCGTCCCCATCCACTCACAGCTGGTCCTCGGCTTCATGACCT
TGTACCGTTCGACGACGCCCGGAGTTGGACCCTCCACCAGTAACAGGGAC
TCGATGCTCTCTGTATACCAGATGATTTCGTGGTTCGTCTTCGTCGCTAG
CGTGGGATGCCAGGTCCTGGGACAGATCCATAGTTTCATGGTCCCGACCC
CGGCCATCTTCTTGCTCAACATCGTCGGCTTCAGCCTCTTCCCGATGTAC
CTCGACGGTGAGTTTCTTCTTATCATTTTTCATATTTTTTTTATCGTGCT
TGTGTGTACCTAATTTTTCATTTTTTTTTATCGTGCTTGTGTGTACCTAG
ACACCTTTTTTCGTTTTCTGCAATCTACACCCCTCTCTTGCGTAGGAATA
GTAGCTTAGCTTAGCCCACGCCTCCTGCCCTTTGAACTTCCAAAGTTGCA
TTTCTTGTGCCGGACTTGAGAGGGCACCGTGTGCGGTTTGTGTTTGTGTT
TTTTTTTTCAACAAAAGAGGCAAGTCAGTTCCAATAGACGGGTCGAAATT
TTCCCCGGGCTACTATAATAAACGAAGATGGGACACGGCATTCATCCCCC
AGTCGTGTCCCCATGATGCACCTACCATAGCTCCTTGTCCTCACGTCCTC
CCATCGCTGCCTCGCTTGACGGACGCCTCTTCCTGTATGTGATGTGCACT
GCTTTCTTTGTGCAAAGTAATGGCACACACGACGCCCGAGAACGTCACCA
AGGATATGTTCAGCATGAGCAAGACCATGGGACCCGGCGCGTAAAAAAAC
ACTCCCGTCTGCTCCACACTGCGTGATTGCAAGTTCGCGTTTCTTTTCCG
AAAGAAAAAAAAAATGCCTTCATGAAGGTGTTGGGCgGGGGGGGGCGGGT
ATATGTCGGGGGGGGCGGACACATGCTATGAATTGAGCGCGCGTGTGTGT
TCCACTGGCTAATGTGTTTAAGCGATGAGATTGACTGTTGACTGTTGCTT
GCTTTTTCGAACGTTTAGACGTCGAATCTGCCATTATGGGATGCAGCAGT
CTGGAGTTTTTATGTCTTGTTCATTCTCGTCGCGGCCGTTGTAAAGTGGC
CGGTAAGATTCTTCCCAGATACCAGGTAAGAAGTAAGCAACGCGCGCCGG
CTTTTCCGTTTCTCTCTGTCGATGGTATATCTTTGAAAGGAGGCCCTTTT
ATTTTTCGCCGCTCGTACGGTGGTCCTACCCGAGCCGTGTGGAGGGCAGG
GCGGGGACTCTGGTGTCTCGTCAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig944:221040..224765+

>mRNA_A-nodosum_M_contig944.27.1 ID=mRNA_A-nodosum_M_contig944.27.1|Name=mRNA_A-nodosum_M_contig944.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=597bp|location=Sequence derived from alignment at A-nodosum_M_contig944:221040..224765+ (Ascophyllum nodosum dioecious)
ATGGGCATCCTGGGCTTCATGGGCTACGCAGGCACGGTGAGCGCCCTCAC
TTTCCTCCACTGGAAGATGTACCGCTGCTTCGCCGGCTACGCTCACACCT
ACAGCGCCTCTTACTACCGCTCTCGCCTCACCTACTACGGATTTCTCATC
ACCATGACCGGGGCCGTACAGCTTGCTCTCGGCGCTTACGTTTTGGACAA
GCTTGGAGGCGGCCCGCTCGCCGCTCCCGTTATTACCGGCGCCTTTTTCA
TCTTGTGGCCCGAGCTGAGCATCTTCGTGGGAGCTATGCAGCTGGTCCTC
GGCTTCATGACCTTGTACCGTTCGACGACGCCCGGAGTTGGACCCTCCAC
CAGTAACAGGGACTCGATGCTCTCTGTATACCAGATGATTTCGTGGTTCG
TCTTCGTCGCTAGCGTGGGATGCCAGGTCCTGGGACAGATCCATAGTTTC
ATGGTCCCGACCCCGGCCATCTTCTTGCTCAACATCGTCGGCTTCAGCCT
CTTCCCGATGTACCTCGACGTAATGGCACACACGACGCCCGAGAACGTCA
CCAAGGATATGTTCAGCATGAGCAAGACCATGGGACCCGGCGCGTAA
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