mRNA_A-nodosum_M_contig942.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.7.1
Unique NamemRNA_A-nodosum_M_contig942.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig942.7.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.630e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 KELEAHTAALEVADSVLDVRHAFFQADIRETGTLTQLELSGAMRNVTGETP 153
            +ELEA TAALEVADSVLDVRHAFFQAD+R +GTLT+ ELSGAMR V G TP
Sbjct:  158 EELEAQTAALEVADSVLDVRHAFFQADVRGSGTLTEHELSGAMRIVMGVTP 208
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BLAST of mRNA_A-nodosum_M_contig942.7.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 KELEAHTAALEVADSVLDVRHAFFQADIRETGTLTQLELSGAMRNVTGETP 153
            +ELEA T ALEVADSVLDVRHAFFQAD+R +GTLT+ ELSGAMR V G TP
Sbjct:  104 EELEAQTVALEVADSVLDVRHAFFQADVRGSGTLTEHELSGAMRIVMGVTP 154
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI9.630e-1680.39Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE3.350e-1578.43EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:15885..16243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGJ5
PFAMsIQ,LRR_4,LRR_8
Model size156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.58e-16
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size153
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.37672-CDS-A-nodosum_M_contig942:15884..159591680870438.37672-CDS-A-nodosum_M_contig942:15884..15959Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 15885..15959 +
1680870438.3917305-CDS-A-nodosum_M_contig942:16163..162411680870438.3917305-CDS-A-nodosum_M_contig942:16163..16241Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 16164..16241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.7.1prot_A-nodosum_M_contig942.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 15885..16241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.7.1

>prot_A-nodosum_M_contig942.7.1 ID=prot_A-nodosum_M_contig942.7.1|Name=mRNA_A-nodosum_M_contig942.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
KELEAHTAALEVADSVLDVRHAFFQADIRETGTLTQLELSGAMRNVTGET
P
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mRNA from alignment at A-nodosum_M_contig942:15885..16243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.7.1 ID=mRNA_A-nodosum_M_contig942.7.1|Name=mRNA_A-nodosum_M_contig942.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at A-nodosum_M_contig942:15885..16243+ (Ascophyllum nodosum dioecious)
AAAGAGTTGGAGGCGCACACGGCGGCTTTGGAGGTCGCAGACTCTGTTCT
GGACGTAAGGCATGCTTTCTTCCAGGCGAGATCTTCTACCGCTACCTGGC
TAACACGACGTGCCTTGCCGGAGACGTCGTAAAATATCTACCCACTTGTA
CGACGCCTGATGGGAATCAGCAACGTTTCAAGTTCGTCTTTAGTGTGCAT
TAGCACTCATGAGACTTCAGGCATATATTTAGCTATCCCCCTCTGATCTC
TATTACGGTCCTAACTAACTCCCCGCCAGGCCGACATAAGAGAAACGGGA
ACCCTTACGCAGCTCGAGCTTAGCGGCGCCATGAGGAACGTGACGGGGGA
GACACCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:15885..16243+

>mRNA_A-nodosum_M_contig942.7.1 ID=mRNA_A-nodosum_M_contig942.7.1|Name=mRNA_A-nodosum_M_contig942.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig942:15885..16243+ (Ascophyllum nodosum dioecious)
AAAGAGTTGGAGGCGCACACGGCGGCTTTGGAGGTCGCAGACTCTGTTCT
GGACGTAAGGCATGCTTTCTTCCAGGCCGACATAAGAGAAACGGGAACCC
TTACGCAGCTCGAGCTTAGCGGCGCCATGAGGAACGTGACGGGGGAGACA
CCT
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