mRNA_A-nodosum_M_contig940.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig940.2.1
Unique NamemRNA_A-nodosum_M_contig940.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.460e-13
Identity = 52/149 (34.90%), Postives = 62/149 (41.61%), Query Frame = 1 
Query:    1 MTAESFCDYLNTEILPQVAATATSDYDPFKGTPAIKATTEIMADVQTFC---------------------RK---------------------------------------VANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            M +E F +YLN ++LPQVA T T DYDPFK  P  K TTE  +  +                        RK                                       VAN++EVYR  L G EAV KR TF SHR+PAPSE+I P
Sbjct:  303 MPSEGFHEYLNKDVLPQVADTKTCDYDPFKHAPVTKTTTETASGEKVVSYSVTVRTARSWLHKLGCEYRDRKSGXVLGDRSHGALLAAQAGVRVPRSQVGPIQVLGPAALTVANFNEVYRDGLQGAEAVQKRDTFNSHRKPAPSEYINP 451
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.460e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  124 MADVQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            +A VQ FCR VAN++EVYR  L G EAV KR TFKSHR+PAPSE+I P
Sbjct:  516 LAIVQKFCRTVANFNEVYRDGLKGAEAVQKRDTFKSHRKPAPSEYINP 563
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-11
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  124 MADVQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            +A VQ FCR VAN++EVY   L G EAV KR TFKSHR+PAPSE+I P
Sbjct:  555 LAIVQKFCRTVANFNEVYSDGLQGAEAVQKRDTFKSHRKPAPSEYINP 602
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.670e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  124 MADVQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFI 261
            +A VQ FCR VAN++EVYR  L G EAV KR TF+SHR+PAPSE+I
Sbjct:  419 LAIVQKFCRTVANFNEVYRDGLQGAEAVQKRDTFESHRKPAPSEYI 464
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5KQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ48_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.770e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  133 VQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            VQ FCRKVAN+H VY   LTG EAV  ++  KSHR+PAPSE+I P
Sbjct:   99 VQKFCRKVANFHAVYDAGLTGAEAVDAQEKCKSHRKPAPSEYINP 143
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.790e-9
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  133 VQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            VQ FCRKVAN+H VY   LTG EAV  ++  KSHR+PAPSE+I P
Sbjct:  623 VQKFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINP 667
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.240e-9
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  133 VQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            V+  C+ VAN++ VYR  L G EAV KR TFKSHR+PAPSE+I P
Sbjct:  649 VRQHCKTVANFNGVYRDGLQGTEAVQKRDTFKSHRKPAPSEYINP 693
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BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.090e-8
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  142 FCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            FCRKVAN+H VY   LTG EAV  ++  KSHR+PAPSE+I P
Sbjct:  390 FCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINP 431
[Close]
BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.910e-7
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MTAESFCDYLNTEILPQVAATATSDYDPFKGTPAIKATTE 120
            MTAE F +YLN ++LPQVA T T DYDPFK  P  K TTE
Sbjct:  384 MTAEGFREYLNKDVLPQVADTKTCDYDPFKHAPVTKTTTE 423
[Close]
BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Match: A0A6H5KNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.070e-7
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  133 VQTFCRKVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITP 267
            V+  C+ VAN+ EV    L G EAV KR TFKSHR+P PSE+I P
Sbjct:  516 VRQHCKTVANFKEVNCDGLQGAEAVQKRDTFKSHRKPTPSEYINP 560
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig940.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JGM4_9PHAE1.460e-1334.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE3.460e-1268.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE2.260e-1166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE7.670e-1167.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ48_9PHAE2.770e-1064.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX5_9PHAE1.790e-964.44Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE6.240e-962.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE2.090e-864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE8.910e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH0_9PHAE9.070e-757.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig940contigA-nodosum_M_contig940:11769..13419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_003980.1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870435.6140559-CDS-A-nodosum_M_contig940:11768..119081680870435.6140559-CDS-A-nodosum_M_contig940:11768..11908Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig940 11769..11908 -
1680870435.6281245-CDS-A-nodosum_M_contig940:13286..134191680870435.6281245-CDS-A-nodosum_M_contig940:13286..13419Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig940 13287..13419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig940.2.1prot_A-nodosum_M_contig940.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig940 11769..13419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig940.2.1

>prot_A-nodosum_M_contig940.2.1 ID=prot_A-nodosum_M_contig940.2.1|Name=mRNA_A-nodosum_M_contig940.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MTAESFCDYLNTEILPQVAATATSDYDPFKGTPAIKATTEIMADVQTFCR
KVANYHEVYRQELTGPEAVAKRQTFKSHRRPAPSEFITPT*
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mRNA from alignment at A-nodosum_M_contig940:11769..13419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig940.2.1 ID=mRNA_A-nodosum_M_contig940.2.1|Name=mRNA_A-nodosum_M_contig940.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1651bp|location=Sequence derived from alignment at A-nodosum_M_contig940:11769..13419- (Ascophyllum nodosum dioecious)
ATGACCGCCGAGAGCTTCTGCGACTACCTCAATACGGAGATCCTGCCGCA
GGTAGCTGCCACCGCCACCAGCGACTACGACCCCTTCAAGGGGACCCCCG
CAATCAAGGCCACCACCGAAATCATGGCTGATGGTCAGGAGGTTGCGTCG
TACTTGGTAAACGTGCGAACTGCGCGATCCTGGCTCCACAAGCTGGGATG
TGAATATCGTGGATACCAAGTCGGGCCTCTACTTCGATGGCCACGACCGG
GAGACGTGCTGAAGTATCGGGTTGAGATATATCTTCCTGCATACTTCAAG
CACCGCGATTACGCGGACATCTGGATCGGTGCGATTCGGGCGGAAGCGGT
GTCCTGGGGCGTGGAATTCCAGGAGCACGTCGAGGGGGAGAACGGGGAGA
GCGGCCAGGTTTGGGTGTGCGTGCATTCTTTCAAGGAAACGCTCTCCGAA
CTTCCTGACACTCTACGACATCGAGTCACCAGCAAACGATTTTATCCCGA
CGGCAGGAAAGCAATATTCTGCTACCAAGACGAGTGCATCTACAGGGCCA
ACGACGGTGAGCGCAAATCGTGGGTCCCGCCCAATGTGCACGGGCTCAAA
AAGAAGGGAGATGGAGCCGGCATTATGATCTCTGGTACCATCGTTGACAA
CGTGGGGTTCATCGAAGGTGACCAAGATGACATCAACAAGGCAAAAGCTT
TGCGCCGCGAGCGCTGCGACCTCTCGGCACACCAGTACGCTGCGGGTTAC
ACGACCAACAGGCCAGAGGAGTATCGCGACATCGACATGCTTTTCAAGGA
CGTTGACGGCAAGTTCTGGACCTACTTCAAGTTCGGGTACGGCAAGAACA
AGCAGGGTTGCTGGACCGGGGAGAAAATGGTTCACCACATGGCGGATGTG
TTGGATCTTTTGGCGGTCAAACTCCAGAACTACAAGCCTATCTGTTTTTT
CGACTGGTCTTCTTGCCATGATTGCGTAGAAGAGGGTGCACCAAGTGTAT
CTCGAATGAATGTCGGGTACGGCGGGGTTAGAAAGGGTGCGGACCTAGCG
GCTCAGGACGCTGTAACTATTCAAGAGGACACGCCCGAATTGAAGAAAGG
GCAAGTGCAGCATCTCACCTTTCAGAGGGCGAGGTTCCCTTTACGATGCA
GATGTCTCGGATCACGTTGGCAAGGTCCAAGGGTTGAAGCAAATCCTGTT
CGAGAGGGGCCTCCTGGTTTCCGGGATGACTAAGTTGGGGACCAAGGTAA
CCCAGCGTTGAGCATGGTAGCGGTACTGAGTGGGCAGTTGGATTTTGCAA
ACGTCGAGCCCAGCCTAGTGATGCTTGTTAGACGCTGCGGGGTTGCACTC
ATGCTTCCCAAAGTTCCACTGCGAGATCAATCCCATTGAGCTAGTGTGGG
GTAGATCCAAGTACTGGATCCGCAAGCACTGCAAGTACACTATACAGTTC
TTGCGGCAAAACGTTTCGCAAAGCTTCAAGGTGGCCGATGACCGGTTGAG
TCTAGCAATAGTCCAAACGTTTTGCAGGAAGGTGGCCAACTACCACGAGG
TATACCGCCAGGAACTCACTGGCCCTGAGGCAGTGGCGAAGAGGCAAACG
TTCAAGTCGCACCGAAGGCCGGCTCCATCGGAATTCATTACGCCTACATA
A
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Coding sequence (CDS) from alignment at A-nodosum_M_contig940:11769..13419-

>mRNA_A-nodosum_M_contig940.2.1 ID=mRNA_A-nodosum_M_contig940.2.1|Name=mRNA_A-nodosum_M_contig940.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig940:11769..13419- (Ascophyllum nodosum dioecious)
ATGACCGCCGAGAGCTTCTGCGACTACCTCAATACGGAGATCCTGCCGCA
GGTAGCTGCCACCGCCACCAGCGACTACGACCCCTTCAAGGGGACCCCCG
CAATCAAGGCCACCACCGAAATCATGGCTGATGTCCAAACGTTTTGCAGG
AAGGTGGCCAACTACCACGAGGTATACCGCCAGGAACTCACTGGCCCTGA
GGCAGTGGCGAAGAGGCAAACGTTCAAGTCGCACCGAAGGCCGGCTCCAT
CGGAATTCATTACGCCTACATAA
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