mRNA_A-nodosum_M_contig94.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig94.35.1
Unique NamemRNA_A-nodosum_M_contig94.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 409 bits (1051), Expect = 1.010e-127
Identity = 206/408 (50.49%), Postives = 280/408 (68.63%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDL-------RQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K+VD+I+++YL AG+I+ S SPY++P+V++ K +GG+RIT +YR+LN+   + Q PIPR+D+ LD L   R +S FDM S FHQI +  +++PLTAF T+SGL+E L MP G+S +PG F +V+ +V  +L H VA Y+DD++V  ++ +S VD +    + L  HNLK++P K+ +GA E  FLGHTISP GV+P+  KV AL K+ MP +V +LRSLLGGLSYYRKFLPN++ R++P+T LLKK   F     ME  VR +L  L  PPVLVY D        R         R   G TLEQ Q D ++RPIV++SR  L +E+ W P++ EA  IVW+IKRLR YL+   F I+TDH  L    +VG +NARVQRW+EFLT YNY + +RKG+A+GN D LSRL
Sbjct:  286 KQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNL-HGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPNGAKVAALTKMPMPRDVKQLRSLLGGLSYYRKFLPNMATRIRPLTTLLKKQATFVFTLAMEQAVRILLSELANPPVLVYPDWDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRL 692          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5JUV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV3_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 5.310e-124
Identity = 197/408 (48.28%), Postives = 265/408 (64.95%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDL-------RQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K+V++I ++YL AG+I+ S SPY++P+VI+ K +GG+ IT +YR+LN+   + Q PIPR+D+ LD L   R +S FDM S FHQI +  +++PLTAF T+S L+E L MP G+S +PG F +V+ +V  +L H VA Y+DD++V  +   + V  +    + L  HNLK++P ++ IGA E  FL HTISP GV P   KV AL K+ MP +V +LRSLLGGLSYYRKFLPN+++R++P+T LLKK   F     ME  VR +   L  PPVLVY D        R             G TLEQ Q D ++RPIV +SR  L +E+ W P + EA  IVW IK LR YL+   F I+TDH PL    + G +NARVQ W+EFLT YNY + +RKG+A+GN D LSRL
Sbjct:   68 KQVEAIHDQYLAAGLIQHSTSPYSSPLVIIPKKSGGVCITVNYRKLNKLCALGQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGRFCKVVNEVIKNL-HDVASYLDDLIVFDDTLPTHVGTMRTLFERLRTHNLKLTPPQATIGATEADFLRHTISPDGVGPTGAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFLPNMAKRIRPLTTLLKKQEKFIFTPSMEQAVRVLFAELANPPVLVYPDWDAVSDGSRPFHLYCDASHDGFGGTLEQEQPDGSIRPIVSISRATLDSERHWTPHDLEAGSIVWCIKCLRGYLWGTKFRIFTDHKPLEHFAKAGENNARVQGWLEFLTAYNYTLEYRKGSANGNADFLSRL 474          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 5.930e-124
Identity = 200/408 (49.02%), Postives = 272/408 (66.67%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDL-------RQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K+VD+I+++YL AG+I+ S SPY++P+V++ K +GG+RIT +YR+LN+   + Q PIPR+D+ LD L   R +S FDM S FHQI +  +++PLTAF T+S L+E L MP G+S +PG F +V+ +V  +L H VA Y+DD++V  +  ++ V  +    + L  HNLK++P K+ IGA E  FLGHTISP GV+P+  KV AL K+ MP +V +LRSLLGGLSYYRKFLP +++R++ +T LLKK   F     ME  VR +L  L  PPVLVY D        R         R   G TLEQ Q D ++RPIV++SR  L +E+ W P++ EA  IVW IKRLR YL+   F I TDH  L    +VG +NARVQRW+EFLT Y+  +  RKG+A+GN D LSRL
Sbjct:  181 KQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGWFCKVVNEVIKNL-HGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPNGAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFLPFMAKRIRYLTTLLKKQEKFIFTPSMEQAVRVLLAELANPPVLVYPDWDAVSDGSRPFHLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEASSIVWCIKRLRGYLWGTKFRILTDHKSLEHFAKVGENNARVQRWLEFLTAYSCTLECRKGSANGNADFLSRL 587          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5JJR1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR1_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 2.560e-123
Identity = 199/408 (48.77%), Postives = 270/408 (66.18%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDL-------RQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K VD+I+++YL AG+I+ S SPY++P+V++ K +GG+RIT +YR+LN+   + Q PIPR+D+ LD L   R +S FD+ S FHQI +  +++PLTAF T+SGL+E L MP G+S +PG F +V+ +         A Y+DD++V  +D ++ V  +      L  HNLK++P K+ IGA E  FLGHTISP GV+P+  KV AL K+ MP +V +LRSLLGGLSYYRKFLPN+++R++P+T LLKK   F     ME  VR +L  L  PPVL Y D        R         R   GATLEQ Q D+++RPIV++SR  L +E+ W P++ EA  IVW IKRLR YL+     I TDH  L    +VG +NA VQRW+EFLT YNY + +RKG+A+GN D LSRL
Sbjct:   43 KIVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDIKSSFHQITV-HDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNE---------ASYLDDLIV-FDDAATHVGTMRALFDCLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPNGAKVSALTKMPMPRDVEQLRSLLGGLSYYRKFLPNMAKRIRPLTTLLKKQEKFIFTPSMEQAVRVLLAELANPPVLDYPDWDAVSDGSRPLHLYCDASRDGFGATLEQEQPDSSIRPIVFISRATLDSERHWTPLDLEAGSIVWCIKRLRGYLWGTKCRIITDHKSLEHFAKVGENNAHVQRWLEFLTAYNYTLENRKGSANGNADFLSRL 439          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5K248_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K248_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 5.520e-122
Identity = 198/421 (47.03%), Postives = 276/421 (65.56%), Query Frame = 1
Query:    4 EVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDY--------------IERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDLRQSETVLGNFRSW-------LGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            +VD+I+++YL AG+I+ S SPY+ P+V++ K +GG+RIT + R+LN+   + Q PIPR+D+ L  L   + +S FDM S FHQI +  +++PLTAF T+SGL+E L MP G++ +PG F +V+ +V  +L   VA Y+DD++V     ++ V                I    + L  HNLK++PSK+ IGA E  FLGHTISP GV+P+  KV AL K+ MPN+  +LR+LLGGL+YYRKFLP +++R++P+T LLKKDV F     ME+ VR++L  L  PPVLVY D          FR +        G TLEQ Q D +VRPIV++SR  L +E+ W P++ EA  IVW IK LR YL+   F I+T H  L  L +VG +NARVQRW+EFLT Y+Y + +RKG+++GN D LSRL
Sbjct:  188 KVDAILDQYLAAGLIQHSTSPYSIPLVVIPKKSGGLRITVNNRKLNKLCALSQLPIPRVDDTLAKLLKGKIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWFCKVVNEVIRNLRG-VASYLDDLIVFDETPAAHVAXSGQCCCPRMVLQATIRSLFERLRTHNLKLTPSKATIGATEAEFLGHTISPDGVRPNGDKVIALTKMPMPNDTKQLRALLGGLTYYRKFLPQMAKRVRPLTTLLKKDVKFEFMDSMESAVRQLLAELASPPVLVYPDWDAVSDGSRPFRLYYDASKDGFGGTLEQEQPDGSVRPIVFVSRATLESERHWTPLDIEAGSIVWCIKHLRGYLWGTYFKIFTYHKSLEHLAKVGETNARVQRWLEFLTAYSYTLEYRKGSSNGNADFLSRL 607          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5JP96_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP96_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 1.220e-120
Identity = 194/406 (47.78%), Postives = 271/406 (66.75%), Query Frame = 1
Query:    7 VDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDLRQSETVLGNFRSW-------LGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            VD+I+++YL AG+I+ S SP ++P+V++ K +GG+RIT +YR+LN+   + Q PI R+D+ L  L     +S FDM S FHQI +  +++PLTAF T+SGL+E L MP G++ +PG + +V+ +V  +L   VA Y+DD++V     ++ V  I    + L  HNLK++P  + IGA E  FLGHTISP GV+P+  KV AL K+ MP +  +LR+LLGGLS YRKFLP +++R++P+T LLKK+V F     ME+ VR++L  L  PPVLVY D          FR +        G TLEQ Q D +VRPIV+ SR  L +E+ W P++ EA  IVW IKRLR YL+   F I+TDH  L  L +VG +NARVQRW+EFLT Y+Y + +RKG+++GN D LSRL
Sbjct:    4 VDAILDQYLAAGLIQHSTSPCSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPILRVDDTLKLL-KGEIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWYCKVVNEVIKNLRG-VASYLDDLIVFDATLAAHVATIRSLFERLRTHNLKLTPPNATIGATEAEFLGHTISPDGVRPNGDKVIALTKMPMPIDTKQLRALLGGLSNYRKFLPQMAKRVRPLTTLLKKNVKFEFTDSMESAVRQLLAELASPPVLVYPDWDAVSDGSRPFRLYYDASKDGFGGTLEQEQPDGSVRPIVFDSRATLESERHWTPLDLEAGSIVWCIKRLRGYLWGTHFKIFTDHKSLEHLAKVGETNARVQRWLEFLTAYSYTLEYRKGSSNGNADFLSRL 407          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5J8H9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H9_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 1.840e-117
Identity = 191/411 (46.47%), Postives = 269/411 (65.45%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDLRQSETVLGNFRS-WL---------GATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K+VD+I+++YL  G+I++SQSP+ +P+V++ K +G +R+T +Y+ L +   + Q P PR+D ++D+L   + FS FD+ S FHQI + E++V LTAFCT + L+E L MP G+S +P  F  V+ +V     H +A Y+DDV+V   D    V     FL  L ++NLK+SP KS +GA+E  +LGHTISP GV P A KV+AL K+ +PNNV +LR LL GLSYYRKF+  L+ R++P+T LL+KD  F     M   V E+L  L++PPVL + D    + V    RS WL         GA LEQ Q D +VRPI+++SR  L +E+ W  ++ EA  IVWAIKRLR Y +   F IY+DH  L S+++VG  NARVQRW+EFL + NY +++R G A+ N D LSRL
Sbjct:   13 KKVDAILDQYLAVGLIQQSQSPWASPLVVMPKKDGNLRLTVNYKTLKKLCSLGQQPQPRVDHIIDSLHKGKVFSIFDLNSAFHQITVEEDTVQLTAFCTPTQLFEWLRMPQGSSVAPSWFTMVINEVVKGPDHVLA-YLDDVIVFDADPVHHVANTRLFLGRLGKYNLKLSPLKSRVGAKEAVYLGHTISPAGVSPRADKVEALIKMPLPNNVKQLRFLLAGLSYYRKFIKGLAVRVKPLTDLLRKDAKFCYTPAMADTVEELLAKLSEPPVLAFPDW---DAVADGSRSLWLCCDACVDGFGAALEQAQADGSVRPILFVSRATLESERNWTVLDLEAGSIVWAIKRLRGYFWPTHFLIYSDHKALESIVKVGEHNARVQRWLEFLFSSNYTLVYRNGTANANADFLSRL 419          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5L5E4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E4_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 6.270e-116
Identity = 192/407 (47.17%), Postives = 267/407 (65.60%), Query Frame = 1
Query:    4 EVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDLRQSETVLGNFR-------SWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            +VD+++++YL AG+I+ S SP+ +P+V++ K +G +RIT +Y+RLN    +   P+PR+D +LD+L + + FS FD+ S FHQI+  E++VPLTAFCT + L+E L M  G + SP  F +V+ +V   L   +A Y+DDV+    +    V  +  F K L ++NLK+SP K+ +GA   +FLGHTISP GV PD  KV AL  +  P NV +LRSLLGGLSYYRKFL NL+ +++P+  LLK+ VPF     M  VV+ +L  L +PP+LV+ D    E      R          GA+LEQ Q D +VRPIVY+SR  LP E+ W  ++ EA  IVWAIKRLR YL+   F IY+DH  L S+ +VG  NARVQRW+EFL+ + Y + +RKG+A+GN D LSRL
Sbjct:   72 KVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMLQGANASPSWFVKVINRVVHGLERVLA-YLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGVSPDGVKVRALTHMPPPTNVKQLRSLLGGLSYYRKFLKNLATKVRPLNSLLKQGVPFKYTPGMVKVVKTLLSELARPPILVFPDWAAIEDNSRPLRLCSDACIDGFGASLEQEQLDGSVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRL 477          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 1.570e-115
Identity = 181/402 (45.02%), Postives = 266/402 (66.17%), Query Frame = 1
Query:   19 IEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDLRQSETVLGNFR-------SWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            ++K L AG++RRS S + + +V+V K NGG+R+T +Y+++N+ +VIP+ PIP ++++L  L SA+ FS+ D++SGF Q  I E+S+P+TA  T +GLYE + MP G S SPG F  VMQ+V   L   V ++IDDV+V S + +  V  +ERF + +T+ NLK++P K+++G + ++FL H ++  G++P  KKV  + ++ MP NVS+LRS+LG LSYYRKFL  +S +L  +T LLKKD  F   ++   V++E+   L+ P VL + D   + T    FR       S LGA +EQ Q+D TVRP+ YLSR+  PNE+ W+  E E   IVWAIK+ R   + IPF IY+DH PL +L  +   N RVQRW +FL+ Y Y +I+R G A+GN D +SRL
Sbjct:    1 MDKLLLAGVLRRSYSNWASSLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLER-VRLFIDDVIVYSRNGAEHVQDLERFFERMTKFNLKLAPKKAQLGVKVVTFLEHQVTAEGIEPCPKKVKPMLQMPMPTNVSQLRSILGSLSYYRKFLKGMSAKLHSVTALLKKDAKFAFTAKHAEVIQEMKDKLSSPEVLAFPDYEGAITGKRKFRLITDASISGLGAVIEQEQEDGTVRPLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESLAEKNNRVQRWFDFLSAYTYELIYRPGKANGNADCMSRL 401          
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Match: A0A6H5L6E5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E5_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 4.890e-114
Identity = 188/408 (46.08%), Postives = 253/408 (62.01%), Query Frame = 1
Query:    1 KEVDSIIEKYLKAGIIRRSQSPYTAPIVIVLK*NGGIRITCDYRRLNEATVIPQTPIPRIDELLDTLGSARFFSSFDMMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQVTADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEIGAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYRKFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYEDL-------RQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEKEARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFLTTYNYRIIHRKGAAHGNTDMLSRL 1203
            K+VD+I+++YL AG+I+ S SPY++P+V++ K +G +RIT +YR+LN+     Q PIPR+D+ LD L   R +S FDM S FHQI +  +++PLTAF T SGL++             H  R            VA Y+DD++V  +  ++ V  +      L  HNLK +P K+ IGA E  FLGHTISP GV+P+  KV AL K+ MP +V +LRSLLGGL+YY KFLPN+++ ++P+T LLKK   F     ME  V  +L  L  PPVLVY D        R         R   G TLEQ Q D ++RPIV++SR  L +E+ W P++ EA  IVW IKRLR YL+   F I+TDH  L    +VG +NARVQRW+EFLT  NY + +RKG+A+GN D LSRL
Sbjct:   88 KQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGSVRITVNYRKLNKLFAFSQPPIPRVDDTLDNLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTCSGLFD-------------HQLRG-----------VASYLDDLIVFDDTPTTHVGTMRALFDCLRTHNLKFTPPKATIGATEEDFLGHTISPDGVRPNGAKVSALTKMPMPRDVKQLRSLLGGLNYYPKFLPNMAKHIRPLTTLLKKQEKFIFTPSMEQAVCVLLAELANPPVLVYPDWDAVSDGSRPFHLHCDASRDGFGGTLEQEQPDGSLRPIVFISRATLDSERHWTPLDLEAGSIVWCIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTADNYTLEYRKGSANGNADFLSRL 471          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig94.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUZ4_9PHAE1.010e-12750.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUV3_9PHAE5.310e-12448.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFL9_9PHAE5.930e-12449.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJR1_9PHAE2.560e-12348.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K248_9PHAE5.520e-12247.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JP96_9PHAE1.220e-12047.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J8H9_9PHAE1.840e-11746.47Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5E4_9PHAE6.270e-11647.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW3_9PHAE1.570e-11545.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6E5_9PHAE4.890e-11446.08RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig94contigA-nodosum_M_contig94:341302..342523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7029.ACYPI22631-PA
PFAMsBaculo_F,RVT_1,rve
Model size1203
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.97e-64
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
DescriptionK02A2.6-like
Cds size972
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870430.93603-CDS-A-nodosum_M_contig94:341301..3416401680870430.93603-CDS-A-nodosum_M_contig94:341301..341640Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig94 341302..341640 -
1680870430.956104-CDS-A-nodosum_M_contig94:341659..3422921680870430.956104-CDS-A-nodosum_M_contig94:341659..342292Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig94 341660..342292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870430.970926-UTR-A-nodosum_M_contig94:342292..3425231680870430.970926-UTR-A-nodosum_M_contig94:342292..342523Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig94 342293..342523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig94.35.1prot_A-nodosum_M_contig94.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig94 341302..342292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig94.35.1

>prot_A-nodosum_M_contig94.35.1 ID=prot_A-nodosum_M_contig94.35.1|Name=mRNA_A-nodosum_M_contig94.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=324bp
MMSGFHQIMIGENSVPLTAFCTTSGLYELLVMPMGTSGSPGHFQRVMQQV
TADLAHFVAIYIDDVLVRSNDESSMVDYIERFLKALTRHNLKISPSKSEI
GAQEISFLGHTISPRGVKPDAKKVDALRKLSMPNNVSELRSLLGGLSYYR
KFLPNLSRRLQPITRLLKKDVPFPSNSEMEAVVREILKVLTKPPVLVYED
LRQSETVLGNFRSWLGATLEQPQKDNTVRPIVYLSRTVLPNEQGWAPIEK
EARYIVWAIKRLRQYLFLIPFNIYTDHLPLTSLLRVGVSNARVQRWVEFL
TTYNYRIIHRKGAAHGNTDMLSRL
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mRNA from alignment at A-nodosum_M_contig94:341302..342523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig94.35.1 ID=mRNA_A-nodosum_M_contig94.35.1|Name=mRNA_A-nodosum_M_contig94.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1222bp|location=Sequence derived from alignment at A-nodosum_M_contig94:341302..342523- (Ascophyllum nodosum dioecious)
AAAGAGGTCGACTCGATAATCGAGAAGTACCTAAAGGCAGGCATAATAAG ACGCTCTCAATCGCCATATACTGCTCCCATTGTTATCGTGCTAAAGTAAA ATGGAGGAATTCGAATCACCTGCGACTATCGACGACTAAATGAAGCTACA GTCATTCCTCAAACGCCTATCCCTCGTATTGATGAGCTACTAGATACGTT AGGGTCGGCCAGGTTTTTCAGCTCGTTCGACATGATGTCGGGGTTCCATC AGATTATGATCGGAGAAAACAGTGTGCCCCTCACAGCTTTCTGTACGACT TCCGGGTTGTACGAACTTCTAGTGATGCCAATGGGCACATCGGGGTCGCC AGGACACTTTCAACGAGTCATGCAGCAAGTCACAGCAGACTTGGCACATT TTGTGGCCATCTACATCGATGATGTCTTAGTTCGTAGTAACGATGAGTCG AGCATGGTTGACTACATTGAAAGGTTCCTGAAAGCTCTTACCAGACATAA TCTGAAAATTTCCCCCAGCAAGTCAGAGATCGGAGCACAGGAGATAAGCT TTCTAGGTCATACGATATCACCACGAGGTGTTAAGCCGGACGCAAAAAAG GTCGATGCGTTACGAAAGTTATCTATGCCGAACAACGTATCGGAGTTAAG ATCACTCCTAGGCGGGTTAAGTTACTATCGAAAGTTCTTACCGAACCTAT CGAGGAGACTACAACCGATTACGAGACTATTAAAGAAGGATGTACCGTTT CCCTCCAATTCTGAGATGGAGGCCGTTGTACGAGAAATACTCAAGGTACT GACGAAGCCTCCAGTGCTGGTATACGAAGATTTGAGGCAGTCCGAAACGG TTCTCGGAAATTTCGTTTGTATTGCGATGCAAGCGTAGCTGGCTTGGTGC CACTCTCGAGCAGCCACAGAAAGACAATACGGTGCGGCCGATAGTATACT TGAGCCGTACGGTGCTACCTAATGAGCAAGGGTGGGCGCCAATCGAGAAA GAAGCACGATATATAGTGTGGGCAATCAAACGCCTACGGCAGTACCTGTT CTTAATTCCGTTCAACATATACACGGATCATTTGCCTCTTACTAGCCTAC TTCGTGTTGGTGTTAGTAATGCCCGAGTACAGCGATGGGTGGAATTCCTA ACGACCTATAACTACAGGATAATCCATAGGAAAGGTGCTGCTCACGGTAA CACAGATATGCTGTCGAGACTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig94:341302..342523-

>mRNA_A-nodosum_M_contig94.35.1 ID=mRNA_A-nodosum_M_contig94.35.1|Name=mRNA_A-nodosum_M_contig94.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at A-nodosum_M_contig94:341302..342523- (Ascophyllum nodosum dioecious)
ATGATGTCGGGGTTCCATCAGATTATGATCGGAGAAAACAGTGTGCCCCT
CACAGCTTTCTGTACGACTTCCGGGTTGTACGAACTTCTAGTGATGCCAA
TGGGCACATCGGGGTCGCCAGGACACTTTCAACGAGTCATGCAGCAAGTC
ACAGCAGACTTGGCACATTTTGTGGCCATCTACATCGATGATGTCTTAGT
TCGTAGTAACGATGAGTCGAGCATGGTTGACTACATTGAAAGGTTCCTGA
AAGCTCTTACCAGACATAATCTGAAAATTTCCCCCAGCAAGTCAGAGATC
GGAGCACAGGAGATAAGCTTTCTAGGTCATACGATATCACCACGAGGTGT
TAAGCCGGACGCAAAAAAGGTCGATGCGTTACGAAAGTTATCTATGCCGA
ACAACGTATCGGAGTTAAGATCACTCCTAGGCGGGTTAAGTTACTATCGA
AAGTTCTTACCGAACCTATCGAGGAGACTACAACCGATTACGAGACTATT
AAAGAAGGATGTACCGTTTCCCTCCAATTCTGAGATGGAGGCCGTTGTAC
GAGAAATACTCAAGGTACTGACGAAGCCTCCAGTGCTGGTATACGAAGAT
TTGAGGCAGTCCGAAACGGTTCTCGGAAATTTCCGTAGCTGGCTTGGTGC
CACTCTCGAGCAGCCACAGAAAGACAATACGGTGCGGCCGATAGTATACT
TGAGCCGTACGGTGCTACCTAATGAGCAAGGGTGGGCGCCAATCGAGAAA
GAAGCACGATATATAGTGTGGGCAATCAAACGCCTACGGCAGTACCTGTT
CTTAATTCCGTTCAACATATACACGGATCATTTGCCTCTTACTAGCCTAC
TTCGTGTTGGTGTTAGTAATGCCCGAGTACAGCGATGGGTGGAATTCCTA
ACGACCTATAACTACAGGATAATCCATAGGAAAGGTGCTGCTCACGGTAA
CACAGATATGCTGTCGAGACTT
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