mRNA_A-nodosum_M_contig939.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig939.19.1
Unique NamemRNA_A-nodosum_M_contig939.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.390e-49
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            MSG+AGSKRFM+PEVC  L YNEK DVYSF IV+WEIC LRKPF+GMSVADHYREV+ GGLRP LD RWP  L HLL +CWH DPDRRPSI+E R+ L
Sbjct:  234 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVL 331
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.660e-44
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            MSG+AGSKRFMAPEVC  L YNEK DVYSF +V+W+ICALRKPF+GMS ADHY +VV GGLRP LD+RWP  L HLL +CWH  PD RP++ + R+TL
Sbjct:  193 MSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQARDTL 290
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.100e-33
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            M+G  GS+RFMAPEV + + YNEKAD+YS+GIV+WE+CAL+KPF+GMS  +H R+V   G+RP LD RWP  L  LL SCWH + + RP  A+  ETL
Sbjct:  263 MTGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERPDAAQAVETL 360
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: B8CCK4_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCK4_THAPS)

HSP 1 Score: 107 bits (268), Expect = 1.640e-28
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            MSG  GS R+MAPEV +   YN+KADVYSFGI++WE+ A +KP+ GM+  + Y  VV GG RP L+ +WP  L+ L+ SCW  +  +RP+ +++ E L
Sbjct:    1 MSGETGSLRYMAPEVADCQPYNQKADVYSFGIILWELVAFKKPYDGMNRDEFYSRVVRGGERPLLNKKWPEDLSELMKSCWDAELVKRPNFSDIVEIL 98
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.330e-28
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            M+G  GS R+MAPEV  +L YNEK DVY+FG+++WE+   R+ F GM V D Y  VV  G RP+LDS WP  L  L++ CWH D DRRP+   + E L
Sbjct:  179 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERL 276
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.370e-28
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            M+G  GS R+MAPEV  +L YNEK DVY+FG+++WE+   R+ F GMSV D Y+ VV GG+RP LDS WP  L  L++ CWH D D+RP    +   L
Sbjct:  326 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRPDFHYIAAQL 423
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A6H5L2R6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.940e-28
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            M+G  GS R+MAPEV  +L YNEK DVY+FG+++WE+   R+ F GM V D Y  VV  G RP+LDS WP  L  L++ CWH D DRRP+   + E L
Sbjct:  392 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERL 489
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A6V4M4K7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4M4K7_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 4.130e-27
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEV 282
            M+G  GS R+MAPEV  +L YNEKADV+SF ++++++ +  KPFSGM +   Y +V+ GG RP +  +WP  +  LL  CWHPDPD RP    V
Sbjct:   55 MTGKTGSARYMAPEVALSLPYNEKADVHSFAMILYQLLSHEKPFSGMDLEMLYTDVIYGGQRPKVPRQWPASMRDLLRDCWHPDPDCRPPFCAV 148
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A7S1ZHS7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHS7_TRICV)

HSP 1 Score: 106 bits (265), Expect = 4.690e-27
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            MSG  GS R+MAPEV +   YN KADVYSFGI++WEI + +KPF GM   + Y  VV GG RP +  +WP  L  ++  CW  DP  RP+  EVR  L
Sbjct:   43 MSGETGSLRYMAPEVADCRPYNHKADVYSFGIILWEIVSFQKPFDGMGRDEFYARVVHGGERPAIGKKWPKELVEIMTRCWDYDPKFRPTFHEVRTKL 140
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BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.160e-26
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVADHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL 294
            MSG  GS R+MAPEV  +L YN+KADVYSFGI++WE+ A +KP+ GM+  + Y  VV G  RP ++ +WP  L  L+  CW  D   RPS  E+ E L
Sbjct:  104 MSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERL 201
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig939.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE2.390e-4975.51Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE1.660e-4469.39Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE1.100e-3358.16Protein kinase domain-containing protein n=2 Tax=E... [more]
B8CCK4_THAPS1.640e-2848.98Protein kinase domain-containing protein (Fragment... [more]
D7FS28_ECTSI2.330e-2852.04Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZE86_9STRA3.370e-2852.04Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5L2R6_9PHAE8.940e-2852.04Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6V4M4K7_9EUKA4.130e-2748.94Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S1ZHS7_TRICV4.690e-2751.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ZVA0_9STRA3.160e-2650.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig939contigA-nodosum_M_contig939:280680..280973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPX1
PFAMsAnk,Ank_2,Ank_3,Ank_4,COR,LRR_4,LRR_8,Pkinase,Pkinase_Tyr,Roc
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
Exons1
Evalue2.51e-50
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
Cds size294
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.6345994-CDS-A-nodosum_M_contig939:280679..2809731680870426.6345994-CDS-A-nodosum_M_contig939:280679..280973Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig939 280680..280973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig939.19.1prot_A-nodosum_M_contig939.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig939 280680..280973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig939.19.1

>prot_A-nodosum_M_contig939.19.1 ID=prot_A-nodosum_M_contig939.19.1|Name=mRNA_A-nodosum_M_contig939.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
MSGVAGSKRFMAPEVCNNLQYNEKADVYSFGIVMWEICALRKPFSGMSVA
DHYREVVVGGLRPHLDSRWPTVLNHLLNSCWHPDPDRRPSIAEVRETL
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mRNA from alignment at A-nodosum_M_contig939:280680..280973-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig939.19.1 ID=mRNA_A-nodosum_M_contig939.19.1|Name=mRNA_A-nodosum_M_contig939.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig939:280680..280973- (Ascophyllum nodosum dioecious)
ATGTCTGGAGTGGCTGGCAGCAAGCGGTTCATGGCGCCGGAGGTGTGCAA
CAATTTGCAATACAACGAAAAAGCGGACGTGTACTCCTTCGGCATCGTGA
TGTGGGAGATCTGTGCGCTCCGAAAGCCGTTCTCCGGCATGAGCGTAGCG
GATCACTACCGAGAGGTCGTCGTGGGCGGATTGCGGCCTCACTTGGACTC
TAGATGGCCGACGGTCCTCAACCATCTCTTGAACTCTTGTTGGCACCCGG
ATCCGGACCGGCGACCTTCCATCGCTGAAGTCCGAGAAACACTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig939:280680..280973-

>mRNA_A-nodosum_M_contig939.19.1 ID=mRNA_A-nodosum_M_contig939.19.1|Name=mRNA_A-nodosum_M_contig939.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig939:280680..280973- (Ascophyllum nodosum dioecious)
ATGTCTGGAGTGGCTGGCAGCAAGCGGTTCATGGCGCCGGAGGTGTGCAA
CAATTTGCAATACAACGAAAAAGCGGACGTGTACTCCTTCGGCATCGTGA
TGTGGGAGATCTGTGCGCTCCGAAAGCCGTTCTCCGGCATGAGCGTAGCG
GATCACTACCGAGAGGTCGTCGTGGGCGGATTGCGGCCTCACTTGGACTC
TAGATGGCCGACGGTCCTCAACCATCTCTTGAACTCTTGTTGGCACCCGG
ATCCGGACCGGCGACCTTCCATCGCTGAAGTCCGAGAAACACTA
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