mRNA_A-nodosum_M_contig939.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig939.14.1
Unique NamemRNA_A-nodosum_M_contig939.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig939.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig939contigA-nodosum_M_contig939:181128..181723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.307779-UTR-A-nodosum_M_contig939:181127..1811401680870426.307779-UTR-A-nodosum_M_contig939:181127..181140Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig939 181128..181140 -
1680870426.3300781-UTR-A-nodosum_M_contig939:181527..1817231680870426.3300781-UTR-A-nodosum_M_contig939:181527..181723Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig939 181528..181723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.3189414-CDS-A-nodosum_M_contig939:181140..1815271680870426.3189414-CDS-A-nodosum_M_contig939:181140..181527Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig939 181141..181527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig939.14.1prot_A-nodosum_M_contig939.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig939 181141..181527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig939.14.1

>prot_A-nodosum_M_contig939.14.1 ID=prot_A-nodosum_M_contig939.14.1|Name=mRNA_A-nodosum_M_contig939.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
MCGWCLAYWTGVVLNTVRESNMPDSKENKQADAGSRRFRRHFLCSALLCN
FLSTEHEGLSTHVQREWSAEPSLLCPAHSVTKNILYSSIIEMQIQSSYCV
CVVFSSRSFWTSSSLDVPAGVTQEGGHT*
back to top

mRNA from alignment at A-nodosum_M_contig939:181128..181723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig939.14.1 ID=mRNA_A-nodosum_M_contig939.14.1|Name=mRNA_A-nodosum_M_contig939.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at A-nodosum_M_contig939:181128..181723- (Ascophyllum nodosum dioecious)
TCTATGTTGACCAATAGGGGACCAGGATAGGTTTCCTCATTGGGTTGTTG
CATGCCTGTATGATACATGGAGTATTCATCATACCTGGTACACTATTATA
ATACACTATTATTAATAGAGATAGGTTAGCTATCGCTATACGCTCGCTAA
AGGATAGGTGTGTAACTATCGTCAGCTTAATACAGGTGTTGGTGTAATGT
GTGGTTGGTGTTTGGCTTATTGGACTGGCGTCGTCCTCAACACCGTACGG
GAAAGTAACATGCCTGATTCTAAAGAAAACAAGCAGGCGGACGCAGGCAG
TCGTCGTTTCCGAAGGCATTTTCTGTGCAGCGCGTTGTTGTGCAATTTTT
TATCTACAGAGCATGAAGGTCTATCTACGCATGTCCAACGGGAATGGTCA
GCAGAACCTAGCCTTTTATGCCCAGCGCATTCTGTCACTAAGAATATTTT
GTACAGCAGTATTATCGAGATGCAAATTCAGTCCTCCTACTGTGTGTGTG
TTGTGTTTTCCTCCCGTTCATTCTGGACATCAAGTTCGTTGGACGTACCA
GCCGGGGTCACACAGGAGGGAGGTCACACATGATTTCTCATCCACC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig939:181128..181723-

>mRNA_A-nodosum_M_contig939.14.1 ID=mRNA_A-nodosum_M_contig939.14.1|Name=mRNA_A-nodosum_M_contig939.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig939:181128..181723- (Ascophyllum nodosum dioecious)
ATGTGTGGTTGGTGTTTGGCTTATTGGACTGGCGTCGTCCTCAACACCGT
ACGGGAAAGTAACATGCCTGATTCTAAAGAAAACAAGCAGGCGGACGCAG
GCAGTCGTCGTTTCCGAAGGCATTTTCTGTGCAGCGCGTTGTTGTGCAAT
TTTTTATCTACAGAGCATGAAGGTCTATCTACGCATGTCCAACGGGAATG
GTCAGCAGAACCTAGCCTTTTATGCCCAGCGCATTCTGTCACTAAGAATA
TTTTGTACAGCAGTATTATCGAGATGCAAATTCAGTCCTCCTACTGTGTG
TGTGTTGTGTTTTCCTCCCGTTCATTCTGGACATCAAGTTCGTTGGACGT
ACCAGCCGGGGTCACACAGGAGGGAGGTCACACATGA
back to top