mRNA_A-nodosum_M_contig939.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig939.13.1
Unique NamemRNA_A-nodosum_M_contig939.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.910e-35
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            LREL   V +V A H+ A+AR+A+A+ A+GL RD++LA+GA+VML++NL+ +VGLVNGIRG+VV++V A     P LP  +V++ EGY+G  WSS  RY  CVPI+P  T+W   G     + R Q+PL L
Sbjct:   67 LRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGT----QVRTQLPLRL 193          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.360e-33
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            LREL   V +V A H+ A+AR+A+A+ A+GL RD++LA+GA+VML++NL+ +VGLVNGIRG+VV++V A     P LP  +V++ EGY+G  WSS  RY  CVPI+P  T+W   G     + R Q+PL L
Sbjct: 1372 LRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGT----QVRTQLPLRL 1498          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.770e-26
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   76 ELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            + A+GL RD++LA+GA+VML++NL+ +VGLVNGIRG+VV++V A     P LP  +V++ EGY+G  WSS  RY  CVPI+P  T+W   G     + R Q+PL L
Sbjct:  266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGT----QVRTQLPLRL 367          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A7D9EBM6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EBM6_PARCT)

HSP 1 Score: 99.4 bits (246), Expect = 1.110e-22
Identity = 58/124 (46.77%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   22 VLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            +  + A HSSA A+K S +   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI+  +  + P LP  +++  + Y GPV+  D     CVPI P   S  T  +   HE RQQ+PL L
Sbjct:   82 IAHINARHSSALAKKISPDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPVAIIVEFDNYRGPVF--DDNKPSCVPICPITVSSQT--EIGFHE-RQQLPLRL 200          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A6S7GPP1_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPP1_PARCT)

HSP 1 Score: 101 bits (251), Expect = 2.640e-22
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            L +L   +  + A HSSA A+K  ++   GL   VFLA+GARVMLT NLWS VGL NG  G +VDIV  + +  P LP  +++  E Y GP +S +     CVPI P   S  T G    HE RQQ+PL L
Sbjct: 1427 LTKLANPIAHINARHSSAVAKKMPSDEMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVSSQTEGGF--HE-RQQLPLRL 1552          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT)

HSP 1 Score: 97.8 bits (242), Expect = 3.480e-22
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            L +L   +  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI+  +  + P LP  +++  E Y GPV++ +     C+PI P   +  T  +   HE RQQ+PL L
Sbjct:   63 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPL--CIPIIPITVASQT--EIGFHE-RQQLPLRL 188          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT)

HSP 1 Score: 96.7 bits (239), Expect = 5.940e-22
Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            L +L   +  + A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI+  +  + P LP  +++  E Y GPV++       C+PI P   +  T  +   HE RQQ+PL L
Sbjct:   37 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNESRPL--CIPIYPITVTSQT--EIGFHE-RQQLPLRL 162          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8)

HSP 1 Score: 97.1 bits (240), Expect = 6.370e-22
Identity = 62/132 (46.97%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFA-TSWSTTGDDRDHETRQQVPLAL 393
            L +L   +  + A HSSA A+K SA+   GL    FLA+GARVMLT NLWS VGL NG  G VVDIV  +  + P LP  +++  E Y GP ++ D     CVPI P   +S S TG    HE  QQ+PL L
Sbjct:   63 LTKLEHPIAHINARHSSAFAKKLSADDMSGLEPVAFLAKGARVMLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAFNVDKP--SCVPICPITVSSQSETGF---HEL-QQLPLRL 188          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A7D9LM67_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LM67_PARCT)

HSP 1 Score: 100 bits (248), Expect = 6.500e-22
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            L +L   +  + A HSSA A+K S++   GL  DVFLA+GARVMLT NLWS VGL NG  G VVD +  +  + P LP  +++  E Y+GPV++ +     C+PI P   +  T  +   HE RQQ+PL L
Sbjct:  903 LTKLEHPIAHINARHSSALAKKISSDDMSGLEPDVFLAKGARVMLTMNLWSSVGLCNGATGTVVDSIYRNNHQPPDLPIAVIVEFENYSGPVFNENQPL--CIPICPITVTSQT--EIGFHE-RQQLPLRL 1028          
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Match: A0A7D9J472_PARCT (ATP-dependent DNA helicase (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J472_PARCT)

HSP 1 Score: 98.6 bits (244), Expect = 2.210e-21
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLWSEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYEGCVPIAPFATSWSTTGDDRDHETRQQVPLAL 393
            L +L   + ++ A HSSA A+K S++   GL   VFLA+GARVMLT NLWS VGL NG  G VVDI+  +  + P LP  +++  E Y GPV++ +     C+PI P   +  T  +   HE RQQ+PL L
Sbjct:  736 LTKLEHPIARINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPL--CIPIYPITVTSQT--EIGFHE-RQQLPLRL 861          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig939.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE2.910e-3550.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE4.360e-3350.38ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JFG8_9PHAE1.770e-2650.00Reverse transcriptase domain-containing protein n=... [more]
A0A7D9EBM6_PARCT1.110e-2246.77Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6S7GPP1_PARCT2.640e-2245.80ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9HJE5_PARCT3.480e-2244.27Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A6S7LS63_PARCT5.940e-2244.27Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI00106C62E86.370e-2246.97ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendr... [more]
A0A7D9LM67_PARCT6.500e-2244.27ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
A0A7D9J472_PARCT2.210e-2144.27ATP-dependent DNA helicase (Fragment) n=1 Tax=Para... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig939contigA-nodosum_M_contig939:167534..167926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size393
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.46e-20
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size393
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.5874543-CDS-A-nodosum_M_contig939:167533..1679261680870426.5874543-CDS-A-nodosum_M_contig939:167533..167926Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig939 167534..167926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig939.13.1prot_A-nodosum_M_contig939.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig939 167534..167926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig939.13.1

>prot_A-nodosum_M_contig939.13.1 ID=prot_A-nodosum_M_contig939.13.1|Name=mRNA_A-nodosum_M_contig939.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=131bp
LRELGTSVLKVEASHSSASARKASAELAQGLHRDVFLARGARVMLTRNLW
SEVGLVNGIRGDVVDIVSAHGEKAPALPECLVLRLEGYTGPVWSSDPRYE
GCVPIAPFATSWSTTGDDRDHETRQQVPLAL
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mRNA from alignment at A-nodosum_M_contig939:167534..167926-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig939.13.1 ID=mRNA_A-nodosum_M_contig939.13.1|Name=mRNA_A-nodosum_M_contig939.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig939:167534..167926- (Ascophyllum nodosum dioecious)
CTCAGAGAGCTCGGTACGTCCGTGCTCAAGGTGGAGGCGAGCCATTCTTC AGCGTCCGCTCGAAAAGCTAGTGCAGAATTAGCCCAAGGGCTACATCGTG ATGTCTTCCTGGCACGAGGCGCTAGGGTCATGCTCACTCGTAACTTGTGG TCCGAGGTGGGGCTGGTCAACGGCATTAGAGGGGACGTTGTCGACATAGT GTCGGCGCATGGAGAAAAAGCTCCTGCTCTTCCGGAATGCTTAGTCTTGC GTTTGGAAGGGTATACAGGACCTGTTTGGTCCAGTGACCCGCGCTATGAA GGGTGCGTCCCCATCGCGCCCTTTGCGACGTCCTGGAGTACCACGGGTGA CGACAGAGACCACGAGACACGCCAACAAGTACCCCTGGCCCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig939:167534..167926-

>mRNA_A-nodosum_M_contig939.13.1 ID=mRNA_A-nodosum_M_contig939.13.1|Name=mRNA_A-nodosum_M_contig939.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig939:167534..167926- (Ascophyllum nodosum dioecious)
CTCAGAGAGCTCGGTACGTCCGTGCTCAAGGTGGAGGCGAGCCATTCTTC
AGCGTCCGCTCGAAAAGCTAGTGCAGAATTAGCCCAAGGGCTACATCGTG
ATGTCTTCCTGGCACGAGGCGCTAGGGTCATGCTCACTCGTAACTTGTGG
TCCGAGGTGGGGCTGGTCAACGGCATTAGAGGGGACGTTGTCGACATAGT
GTCGGCGCATGGAGAAAAAGCTCCTGCTCTTCCGGAATGCTTAGTCTTGC
GTTTGGAAGGGTATACAGGACCTGTTTGGTCCAGTGACCCGCGCTATGAA
GGGTGCGTCCCCATCGCGCCCTTTGCGACGTCCTGGAGTACCACGGGTGA
CGACAGAGACCACGAGACACGCCAACAAGTACCCCTGGCCCTA
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