mRNA_A-nodosum_M_contig9381.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9381.2.1
Unique NamemRNA_A-nodosum_M_contig9381.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9381.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9381contigA-nodosum_M_contig9381:12863..18740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons4
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870425.8629885-CDS-A-nodosum_M_contig9381:12862..129391680870425.8629885-CDS-A-nodosum_M_contig9381:12862..12939Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9381 12863..12939 +
1680870425.8746853-CDS-A-nodosum_M_contig9381:17400..174631680870425.8746853-CDS-A-nodosum_M_contig9381:17400..17463Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9381 17401..17463 +
1680870425.8858175-CDS-A-nodosum_M_contig9381:18144..183131680870425.8858175-CDS-A-nodosum_M_contig9381:18144..18313Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9381 18145..18313 +
1680870425.8983414-CDS-A-nodosum_M_contig9381:18656..187401680870425.8983414-CDS-A-nodosum_M_contig9381:18656..18740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9381 18657..18740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9381.2.1prot_A-nodosum_M_contig9381.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9381 12863..18740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9381.2.1

>prot_A-nodosum_M_contig9381.2.1 ID=prot_A-nodosum_M_contig9381.2.1|Name=mRNA_A-nodosum_M_contig9381.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=131bp
RGANPQSRADEAGGGDFGAAQRGRRRREETSSTVPTSTPGITRARAWLRH
FTGKLQRTARHAGPCRSGGNFASITICLGGLESPSPPWQIAPPQTCCSAR
LKQTMQGFPIWATATSWMLCATFCASRSIS*
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mRNA from alignment at A-nodosum_M_contig9381:12863..18740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9381.2.1 ID=mRNA_A-nodosum_M_contig9381.2.1|Name=mRNA_A-nodosum_M_contig9381.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5878bp|location=Sequence derived from alignment at A-nodosum_M_contig9381:12863..18740+ (Ascophyllum nodosum dioecious)
CGTGGTGCAAACCCACAGTCTAGAGCTGACGAGGCTGGCGGTGGGGACTT
TGGCGCTGCTCAGCGAGGGAGGAGACGGTGAGACGCCATAGGCAACGAGT
TGTGGCCGTGAAGCCTCTTTACCGCGCGTGCTTGCTTCAGGCTCACAAAC
CTGTCTAGACATGTTCTCTTGGTTCGATTTCGGTTTGCTCAAGTTGCTGA
ATAAATAAAGAACGACGCATCACCTGAGAGTTTTGACACCGTTTTTTTGT
GTAGCACGAACGAGTGTATAGCAAAAGAACGGGCGGAGATCCCCCATTCT
GACGACACTTCATATAGGGCAGTCGAGCATGCCCCTTAGAATGCCATTGC
ATCAAAGCTGGCTAAGACGCGAAAGCACACCATGCAGGTGGCAGGGCTAT
TCCCGCTTGTAGACGGTGCGCGCGGTTGTGGTGTCGAGTTTCGTCGTTAG
CGTGACACGAACTTGCCGTGTACCCTTTCTTTTACAAATATGGCGACCGA
CTCAAGCGCTTTCGTGGTGTAATCCGTGGTTTTATCGAGCTTTTTGTCAC
CAGTAGAGCGTACTAAGGCCGACTCTTATGGGAACGAAAAACTTGTAAGA
AAATGGACCAAATCCGTTTTTTGTTTTTTTTTCATTTTTTTGGGAACGAG
AATGGTCCAGATTCGTATAGCCAAATCCGTTTGAGCGTTTCGTAACGAGA
CTACAAACGGATTTTGCACGCGGCGCAACTATTACTACATTTGGCCAATA
ACAGACAGTTTTTCCCCCTGACTGGGGATGCTCAGAAGGTCTAAGGCGCG
GTCTAGTTTTTCTTTGAACACTGCTAGAACTCAAAAAATAATTACCTCTG
CCAGGAATGCGGCGGCTATCGCCAGGGTATGGTCGAATTGAGGTCCATAG
TTTTTTACTCAAGATAAGAGAGAGGACGCTGGCGGCAAGATCCAAGGTGC
TTGAGATGCTTGAAGTTAAGGATGAGGGATGGTTTGGGAGGCTTGATGAT
GACTCCCAGAGGGTCAAGTGGATGCGGCGCGTGTATCTCCTAGTTGACTA
CACGCAGGCACCATGAACGGTTGTAATGCTCAGGCAGCCGAGCTAAATCA
TCCACACTTCAAGTGAGGCATAGACGTTTCACCGGCGGTTCCGCACGCAA
TATGTCTTTTCGTGGGCTCCTCTCCTTGTTGGCGGCACAGCAGAAGTGGT
ATCATCATATGCAACAAGTAGTACAGAGTTTGATTCCACACAACTACAGA
CAAGATTGGTGTACCCAGTGAACTGCACGTAGCACAATCACACACCCGTA
CTATAACTGAATTGCTTACTCGCCGGGACTTTCAACATGCCCACTTCATA
TCAATAGTGGATGTGGGAAAGAGAGGCGAATATTAATTTGTCCATGGTGA
TCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAGCTTTACTGGCCCTG
TGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACC
CGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATCATGGACG
CCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGTCT
GAGTATGGAGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGT
CTCGCGAGACCAAATTCTCAGACACGCACGGGGACAAGGGAATGTTCATT
TTCCCTGTTCAGCTGACCACGACCAGGATTGGCAACCTTACCCGGTTGAT
CCATACTCTGCTATATGTGATGACCATACATACATACATACATACGAAGT
ACTACTGTACAGCGGTCTGTATTTGTTTGAGTATTGTTGTTTTCATCTAA
TTTCTGGGACAATACATCGCGATATCGTTCACCGAAACAGGAAGCGCGCG
CTCCTGTCACAGTCAACGGTTCGAGAAGAGCCTGTTGAGAAAAGTGCCAG
GTAATTGCTAAAATAGGTTGTCTACTTATTCCACTCCAAGTGCACCCCAC
AATACAGCAAACCGGGTGGTTTGTACAAGTGTCTTCTGGTGTAGCCTTCT
GTCTTCGGATGATATGTACCGGCAGCAGATTTTCCCTCATCTGCGGTGAA
TAACGACGCGACCAACTGTTCTAGACTACAATAACTTTAACAGTTAGTTG
CTGTTGAACTCCGCAAAGCGCTTGGTACAACATGAAGCCCGTGTAACGAT
ACGACACGCTGCGTGCATTCGTTGTGGTGGAATTATGTCTCGATGCATCC
GTTCGCCCGAGTATGAAAAAATTACCGGTATCGCCAGGGCAACGTACTGT
ATTCGAGTACAGCAGTACATAAGTATGGGTACGTAGACTAAGTCTAAGAC
GTCTTAGTGAAAACCGTACCAGCAGACGAACCTGCTGTAATTCCGGTGAG
CCCTGACGAGTATCGAAGCCGCACACATCAACACAATTTACTTCGACCGT
TGATATAATGGAACAGTGGAGCGAGTTTAAAGCCGTGGGATTCTGGCAGC
CAGCAAACAACATCGGTGCGGTGTCTGTCTGTAGTTCTGGACGTAGTGTA
CAAACTTAGAGTAGCGCATTCTTGCCGGGCTGTGCTTGTGTTCATCCTCC
AACAATGCGTGATTAAGAGTAAATCCTCGACATGAGTTGGTGTCTGCGCT
TTACTGGTAAAGTAGTACAACTGTAGAGCTCCAGCTCGTCTGCTCTTGCA
TATCTCGCCCTCTTGTTTTGAAAAATTGGTGGTCATTTCCATTCGGCAAT
TTCATTGTTGTAGGCCCCAAAGAAGAAAAACGGATTTGGGCCAAGTCCGT
TTAAGGTTTTCGTTCCCATAAGAGTCGGTCTAATGGGGCAAATCACCGTG
AAAAAAAAGGATGGAAGCCCCTTTTCCCTATAGGAATATATTTGTATTTA
TTTTCCCTTTTTTTCTTGTTCCGGTTCGTGGGGGCTCTGTTATCAGTAAG
GGCGCATAAAAACCGACACCTGCTCTCCTGATTGGCCAGGAACGATCCAA
AATAATGACAAGACCTCTATACCACCCCTCCGGAGTTGGCGCCTACAGGA
AAACAGGTTGATCGATATACGAAAGCCGTGAATACGGGCGTTTTGCCTCC
AAATGCCTGTTTGATATCTACAATTTGAGATGAAGGGAATCTGGTGAAAT
ATACGGCAAGTCTTGCAAACGACAGAGATAACAGTCAAGGATCTTCATGC
CCAGGCACTTTTGGGCTTCCAAGGTCATGTACCTTGGTTCGGGGCGGCCG
GAGCAAGGGTTGCGAAAACTCGGCAATCCTGCCGCAAAAGGCCCAAAAAG
GGCGCCTGCATACATGTAGTCAACTTTGTTAGTCGACACTACGTGTAGAA
GGTTGTGCTCTTCGGGGGGCTTTGGGAGGTCTGTTGCAAACCCCGCTGTC
TCGGGGGTGATCCTAGGCTCAAGACCGGAGGATACCTGCTCGATCTCCTA
CTGCTGCAGACGCTGCACCACGCACACCGCCGAATCACTCGCACGAGAAA
AAATATGTGCAGAAGAGAAATCTCGAATTCCCCTTGAACGGGATCGGCGT
TGTTTACCATGGGTTATGCATATATGCACACGTGCCCGATATTTCAGGGT
ACCGTTAGGGTTTTGACGTCGACCCCAAAGGATATTACAAGGAACGTTCC
TGGGCTCGAAAACAGAGTCTTGGGCACTGTGCCCCATGATCTACAACCGC
CTTACGCCGATAGCCCTGAGTCATAGGATCGCGTACATATCTTGTGGAAC
TGCCAGGGCGCCGTGGTTGCTCCGTTATCCGAGGTTCCCCAAGAGGGCTC
TCCACGTTTCTTCCTGTTTTCTCTAATAAAGCTCAACTTGGCTTCTCACC
CATTGGCTTGGAACTACAGACGTGTGACGGTTTCATCAATATTTTGTGAC
GTAAAAGAGCAACGCTCACTTCGCGAGGTACCACGAAACGTTTGCATGCT
AGGGCTGCGATAAGGAGGCTGTTGTATTGTGAGTCGGAAAATTGGGGAAC
ATACCTAGATGACTGAGTAGCTCAGGGTACCGCTTTAGAAGCAGACGATA
AAAAAATCGTGAGCTTAAATCCGACCGCGAGCACTGTTTGTTAAGGGAGC
ACGTCAGTGGCGAGGGGAATGCCCCGGGTATCACTGTCGTTACCGGGAAA
GGCCAGAGAGCCTAAGACATATATTTTGTTAGTTGGCGGCTAAACCATTG
GACTACTCGATCACGCGAGCACTGTTTGTCAAGGGAGCACGTTAGTGGCA
AGGGGGTGCCCCGGAAATTACTGTCGCTACCGGGGAAGGCCAGAGAGCCT
AAGACACATATTTTGTTAGTTGTCGGCTAAACCACTGGAGGACTACTCGG
TCACGTGGCTCAGTAGTTCAATGATTTAACCGCCAACGAACACTCTGACC
CCACATGATACTCCGGGATGGGATTTTTTTTAAATAATGTGCGAGAGGTA
CAAGTACGGTCGCTCTCCCGTGAAACCGACCGTAAAAGGGAGAGCTACTA
ATATTCTCGCCTCGCATCTCTCTGATGCTCTGTCAAAGGAGGGAGGAAAC
GTCGTCTACCGTACCGACGTCTACACCCGGGATCACACGAGCCCGCGCAT
GGTGAGGATTGCCGCAAAGAAGCGACTTGGCAATATAAGGGAGCCCGTTA
TAAAACAGAACAAGTAGCGGGGATTAATCTACCGATCGATCAATGCTTAA
GAGTGCGGTTTCAGCTTGTCGGATGACGGTTGCACGTGCCGCTGTCTCTT
TAAATTTATTTATGAAAGCTGCAATACCGCCCCTTTAACGAAGAGATACA
GAATGCCTGATGCATTATTTTACCGCATGGTACGCCTCGCTAATCCAACA
ACCAATGCGGGCCGTCGCTGAGTAGTTTCTGACTCATGGGGCTTACTACA
CCGCACACATGCTTGATTCCACTGCAAGAGGAGTAGTTGTTTCTTACATG
AAACGTGCAGCACATCGTGTTGGATGGCGACTCGAGCTTTGAAGTAGCTG
ATGTGCAGTCAGAAGCGCTCGCCCAATTATTGGCACTTGAAGGCAGGCGG
TTTTGAGGGATGAGGTCTCCGACCCGTTTTGAATGGCGTACTACAAAAGT
ATGTCTAGCCACAAAGTAAGCGCGTCGGAGCTTGAACAAACTTTTTGTCT
TGCGTCCACGGTTTCAAGTTATTTTAAAATAAGCATAAATGCCTTTCTTC
TGGATAACCATAATGCCCCCCCCAAGCGACGACCTTCACTGTAGCAGATG
CATTTTCTTTTCTGATGCCCACGTTTCAACAGGCTTCGTCACTTTACGGG
GAAATTACAGCGGACGGCGCGCCACGCCGGGCCTTGCCGCTCGGGCGGCA
ACTTTGCTTCTATAACGATCTGTTTGGGTGGGCTCGAATCGCCTTCCCCG
CCCTGGCAGATCGCCCCCCCCCAGACATGCTGTTCGGCCCGACTGAAGCA
GGTACAAACAAACAGTACAGCAAGTAACTTGTAAGTTTAGATTCGGTGGG
TCCGTTTGCAATCATATTACAAAGCTCTACTGATACCTGTGTGCGAAATT
TGAAGATATAAAATTATTGTACACGGATAATACCAGGTACTGTACTGAAG
TGTGTGACCTTCATACTTATCCTTCAAATTATCAATTATTACCTTCTCGT
TCCCACGAGTACCTGGTACTTCTGTTAGAGCTGTCTGTACGCAAACGGAC
GGGTGGGCACACCTTATTTCATGAGAACCTTACAAGAGAGCACGGCTCTT
ACCAATTCGCTTTTTCACTGCGCCTGACCCTGGCGATTGTTTAGACTATG
CAAGGGTTCCCGATCTGGGCTACGGCGACGTCTTGGATGCTGTGCGCCAC
CTTCTGTGCTTCGCGCTCGATCTCATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9381:12863..18740+

>mRNA_A-nodosum_M_contig9381.2.1 ID=mRNA_A-nodosum_M_contig9381.2.1|Name=mRNA_A-nodosum_M_contig9381.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig9381:12863..18740+ (Ascophyllum nodosum dioecious)
CGTGGTGCAAACCCACAGTCTAGAGCTGACGAGGCTGGCGGTGGGGACTT
TGGCGCTGCTCAGCGAGGGAGGAGACGGAGGGAGGAAACGTCGTCTACCG
TACCGACGTCTACACCCGGGATCACACGAGCCCGCGCATGGCTTCGTCAC
TTTACGGGGAAATTACAGCGGACGGCGCGCCACGCCGGGCCTTGCCGCTC
GGGCGGCAACTTTGCTTCTATAACGATCTGTTTGGGTGGGCTCGAATCGC
CTTCCCCGCCCTGGCAGATCGCCCCCCCCCAGACATGCTGTTCGGCCCGA
CTGAAGCAGACTATGCAAGGGTTCCCGATCTGGGCTACGGCGACGTCTTG
GATGCTGTGCGCCACCTTCTGTGCTTCGCGCTCGATCTCATGA
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