mRNA_A-nodosum_M_contig937.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig937.2.1
Unique NamemRNA_A-nodosum_M_contig937.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig937.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig937contigA-nodosum_M_contig937:84949..85674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size726
Hectar predicted targeting categorysignal peptide
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870421.6449091-UTR-A-nodosum_M_contig937:84948..852141680870421.6449091-UTR-A-nodosum_M_contig937:84948..85214Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig937 84949..85214 -
1680870421.7424843-UTR-A-nodosum_M_contig937:85646..856741680870421.7424843-UTR-A-nodosum_M_contig937:85646..85674Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig937 85647..85674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870421.7285717-CDS-A-nodosum_M_contig937:85214..856461680870421.7285717-CDS-A-nodosum_M_contig937:85214..85646Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig937 85215..85646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig937.2.1prot_A-nodosum_M_contig937.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig937 85215..85646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig937.2.1

>prot_A-nodosum_M_contig937.2.1 ID=prot_A-nodosum_M_contig937.2.1|Name=mRNA_A-nodosum_M_contig937.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=144bp
MLCSARFLFCHLVRHSKAVIVPVQASGRAVASLAGWWYQEASGGRGSGQF
PYCSRSSWLSNIRHARRPKMRAGRGGSQLTLAPSSIENVVYVRCTWLCFG
RKNILQDVKTSFLAVSWDDDLDLSWELSRGRRRTKGMRRRRGR*
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mRNA from alignment at A-nodosum_M_contig937:84949..85674-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig937.2.1 ID=mRNA_A-nodosum_M_contig937.2.1|Name=mRNA_A-nodosum_M_contig937.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at A-nodosum_M_contig937:84949..85674- (Ascophyllum nodosum dioecious)
CCATAATAGTAGATTGCGATCGTTCAGCATGTTGTGCTCAGCGCGTTTTC
TGTTTTGTCACCTAGTTCGCCATTCAAAAGCTGTGATCGTACCCGTCCAA
GCAAGTGGCCGTGCTGTTGCTTCTCTCGCAGGGTGGTGGTATCAGGAAGC
GAGTGGAGGACGCGGTTCAGGACAATTTCCGTATTGCTCACGCTCATCCT
GGCTCTCCAACATCCGACATGCCCGTCGTCCTAAGATGAGGGCTGGAAGA
GGTGGGAGCCAATTGACCTTGGCGCCCTCCAGTATCGAGAACGTAGTCTA
CGTCCGTTGTACCTGGCTCTGTTTCGGCAGGAAAAACATTTTGCAAGACG
TAAAAACGTCTTTCCTCGCGGTATCGTGGGATGATGATTTAGATTTATCA
TGGGAACTATCGAGGGGCCGCAGACGAACCAAAGGTATGCGTCGTCGGCG
AGGGCGGTAGAGTACGCTCGTGGCGCCGTGGTCGATTATGGCGCACGCGG
CAAAGGGGAACATGTTTGAATTGAACGAATGTTGTACATGATGAGGAGCT
TCTGTGTTTATAGGAAGCACTGGATGGAAGGTCGAGAACAGTAAGCCTAG
AGGAAGAGTATTTTCATGTTCACTGATGTTAAATAGCATATCGGTAAGCG
CAACAATGTTCAAAGTCGATCTGCGAGGTGATCGGAGATTCGGGGCGGTT
ACAGATCTTAAACGGGAGTTTGGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig937:84949..85674-

>mRNA_A-nodosum_M_contig937.2.1 ID=mRNA_A-nodosum_M_contig937.2.1|Name=mRNA_A-nodosum_M_contig937.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at A-nodosum_M_contig937:84949..85674- (Ascophyllum nodosum dioecious)
ATGTTGTGCTCAGCGCGTTTTCTGTTTTGTCACCTAGTTCGCCATTCAAA
AGCTGTGATCGTACCCGTCCAAGCAAGTGGCCGTGCTGTTGCTTCTCTCG
CAGGGTGGTGGTATCAGGAAGCGAGTGGAGGACGCGGTTCAGGACAATTT
CCGTATTGCTCACGCTCATCCTGGCTCTCCAACATCCGACATGCCCGTCG
TCCTAAGATGAGGGCTGGAAGAGGTGGGAGCCAATTGACCTTGGCGCCCT
CCAGTATCGAGAACGTAGTCTACGTCCGTTGTACCTGGCTCTGTTTCGGC
AGGAAAAACATTTTGCAAGACGTAAAAACGTCTTTCCTCGCGGTATCGTG
GGATGATGATTTAGATTTATCATGGGAACTATCGAGGGGCCGCAGACGAA
CCAAAGGTATGCGTCGTCGGCGAGGGCGGTAG
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