mRNA_A-nodosum_M_contig9353.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9353.1.1
Unique NamemRNA_A-nodosum_M_contig9353.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.610e-42
Identity = 73/99 (73.74%), Postives = 84/99 (84.85%), Query Frame = 1
Query:  142 ARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            ARI YLIM+SG EELHKTKRL+KAIYD   FYLVHLDRK   SIR + E+FI  WD+VRMLEPA+DVSWGGYT+TLTAIFG+  MVQ +D+WD+FINLS
Sbjct:  174 ARIGYLIMSSGTEELHKTKRLLKAIYDPNNFYLVHLDRKDKHSIRRDFENFIEEWDNVRMLEPALDVSWGGYTITLTAIFGICTMVQWNDEWDFFINLS 272          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.510e-24
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  142 ARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            AR A+LIM  G  ++   +R +  +Y    F+L+H+DRKS    RA++ + +   D+ R+LEPA  VSWGGY++TLTA+FGLS +V+ S DWDYFINLS
Sbjct:  128 ARFAFLIMAHGPADVELLRRNVPWLYSPLNFFLIHMDRKSSDKDRADVRELLHGLDNARILEPAQSVSWGGYSITLTALFGLSTLVEWSRDWDYFINLS 226          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.730e-17
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  133 PPWARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDD--------VRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            P  AR+ + IM + L+EL     L++ +Y    F+LVHLD K+ A  R  +E  I    D        VR ++PA+ V+WGG+T+TL A++GL++ +  +  WDYFINLS
Sbjct:   84 PQKARVVFYIMVANLQELPGLDALLRTLYHVDHFFLVHLDVKASALARQGVESGIERMLDERGNGERNVRFVDPAMPVTWGGFTMTLNAVYGLTQALHWNTKWDYFINLS 193          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-14
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  163 MTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDD--------VRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            M + L+EL     L++ +Y    F+LVHLD K+ A  R  +E  I    D        VR + PA+ ++WGG+T+TL A++GL++ +  +  WDYFINLS
Sbjct:    1 MVANLQELPGLDALLRTLYHVDHFFLVHLDVKASAQARQGVESRIERVLDERGNGERNVRFVSPAMPITWGGFTMTLNAVYGLTQALHWNTKWDYFINLS 100          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A7Z1WZR9_9SPHI (Glycosyl transferase n=2 Tax=Sphingobacterium psychroaquaticum TaxID=561061 RepID=A0A7Z1WZR9_9SPHI)

HSP 1 Score: 76.6 bits (187), Expect = 7.990e-14
Identity = 37/98 (37.76%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  145 RIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            +IAY IM   L E  +  RL  +IYD+  FYL+H+D+K++ S++  L  +++ + +V +L+ + DV WGGY++    + G+  ++  + +WDYFINLS
Sbjct:   23 KIAYFIMVHRLPE--QFMRLFSSIYDSDNFYLIHVDKKANESVKQVLNLYLNNYKNVAILK-SEDVVWGGYSMVQAELEGIKYLLNINVEWDYFINLS 117          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A2A2M7Y7_9GAMM (Glycosyl transferase n=9 Tax=Enterobacterales TaxID=91347 RepID=A0A2A2M7Y7_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.150e-12
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  196 KRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            KRL KAIY     Y+VH+D+ S   I  ++  F+S + +  ++E ++D +WGGY+L    + G+  +++ SD W++FINLS
Sbjct:   16 KRLFKAIYHADNQYVVHIDKSSSEEIHQDIHHFLSEYPNASLIE-SMDANWGGYSLVDAELRGMKMLLEKSDSWEFFINLS 95          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: UPI000A2ED8BA (glycosyl transferase n=1 Tax=Flavobacterium sp. B17 TaxID=95618 RepID=UPI000A2ED8BA)

HSP 1 Score: 70.1 bits (170), Expect = 1.890e-11
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   91 TRVLGESKEAFVAAPPWARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            T V  E   A   +P   +IAY IM     E  K K+L + IY   + YL+H+DRKS       ++ FI  + +  +LE +++++ GG+++  T I  +  ++  SDDWD+FINLS
Sbjct:    8 TYVQTEPLAALAGSP--VKIAYFIMVH--HEAEKFKKLFQKIYTRDQVYLIHIDRKSKDGFTEEIQQFIIQFPNAYILE-SMNINPGGFSIIQTQINAMEFLLNVSDDWDFFINLS 118          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A0N0ITW4_9FLAO (Glycosyl transferase n=1 Tax=Chryseobacterium indologenes TaxID=253 RepID=A0A0N0ITW4_9FLAO)

HSP 1 Score: 67.0 bits (162), Expect = 2.510e-10
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  130 APPWARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            A P  RIAY IM     E+ K   + + IY   +FYL+H+DRK++A I   +  F+  + +V +LE ++++  GG+++    +  +  ++  S +WDYFINLS
Sbjct:   18 AGPQVRIAYFIMIHHKPEVFKN--MFQKIYTRDQFYLIHIDRKANADITEEILIFLVQFPNVYILE-SMNIVSGGFSMIQAELNAMEYLLNVSQEWDYFINLS 117          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A6N4X8Q4_9FLAO (Uncharacterized protein n=2 Tax=Chryseobacterium potabilaquae TaxID=2675057 RepID=A0A6N4X8Q4_9FLAO)

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-10
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  136 PWARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFISTWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            P+ RIAY IM     E+ K   + K IY   +FYL+H+DRK+ + I   ++ ++  + +V +LE ++++  GG+ +    +  +  ++  S +WDYFINLS
Sbjct:   28 PYVRIAYFIMIHHKPEVFK--EMFKKIYTKDQFYLIHIDRKAKSEITEEIQLYLVQFPNVYILE-SMNIVSGGFGMIQAELNAIEYLLNVSQEWDYFINLS 125          
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Match: A0A7S1XC73_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XC73_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 4.720e-10
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  142 ARIAYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSD-ASIRANLEDFI-----STWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS 438
            ARIAY I  S    LH   RLI+ I+ T+  Y VH+D K+D A++R  +         S + +V  +E A  VS+ G T+ L  I G+  +++ S  WDYFINLS
Sbjct:   63 ARIAYFIQVSNASVLH-LNRLIRRIHHTENVYAVHVDAKADEAAVRDGIRALRNGPAGSMYQNVYFME-AEAVSYPGVTMVLNTIRGMEFLLERSQKWDYFINLS 165          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6Q9_9PHAE8.610e-4273.74Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5L1U8_9PHAE8.510e-2449.49GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5KJT8_9PHAE1.730e-1740.00Protein xylosyltransferase (Fragment) n=1 Tax=Ecto... [more]
D8LCA7_ECTSI1.560e-1439.00Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A7Z1WZR9_9SPHI7.990e-1437.76Glycosyl transferase n=2 Tax=Sphingobacterium psyc... [more]
A0A2A2M7Y7_9GAMM3.150e-1238.27Glycosyl transferase n=9 Tax=Enterobacterales TaxI... [more]
UPI000A2ED8BA1.890e-1135.34glycosyl transferase n=1 Tax=Flavobacterium sp. B1... [more]
A0A0N0ITW4_9FLAO2.510e-1034.95Glycosyl transferase n=1 Tax=Chryseobacterium indo... [more]
A0A6N4X8Q4_9FLAO3.600e-1033.66Uncharacterized protein n=2 Tax=Chryseobacterium p... [more]
A0A7S1XC73_9RHOD4.720e-1040.00Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9353contigA-nodosum_M_contig9353:11973..13055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMI2
Preferred nameXYLT2
PFAMsBranch,WSC,Xylo_C
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
Exons3
Evalue8.05e-43
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.2.26
Descriptionacetylglucosaminyltransferase activity
Cds size438
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870420.427683-CDS-A-nodosum_M_contig9353:11972..121821680870420.427683-CDS-A-nodosum_M_contig9353:11972..12182Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9353 11973..12182 +
1680870420.50994-CDS-A-nodosum_M_contig9353:12382..124891680870420.50994-CDS-A-nodosum_M_contig9353:12382..12489Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9353 12383..12489 +
1680870420.5256894-CDS-A-nodosum_M_contig9353:12934..130551680870420.5256894-CDS-A-nodosum_M_contig9353:12934..13055Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9353 12935..13055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9353.1.1prot_A-nodosum_M_contig9353.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9353 11973..13055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9353.1.1

>prot_A-nodosum_M_contig9353.1.1 ID=prot_A-nodosum_M_contig9353.1.1|Name=mRNA_A-nodosum_M_contig9353.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=146bp
TPAWLTVTARRVLRQISGEVTLTPRKPVASTRVLGESKEAFVAAPPWARI
AYLIMTSGLEELHKTKRLIKAIYDTKKFYLVHLDRKSDASIRANLEDFIS
TWDDVRMLEPAVDVSWGGYTLTLTAIFGLSKMVQSSDDWDYFINLS
back to top

mRNA from alignment at A-nodosum_M_contig9353:11973..13055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9353.1.1 ID=mRNA_A-nodosum_M_contig9353.1.1|Name=mRNA_A-nodosum_M_contig9353.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at A-nodosum_M_contig9353:11973..13055+ (Ascophyllum nodosum dioecious)
ACACCAGCGTGGCTGACTGTTACAGCCCGCCGGGTATTGAGACAGATCTC GGGGGAGGTTACGTTGACACCCCGGAAGCCTGTGGCATCTACACGTGTCT TGGGGGAGTCGAAAGAGGCCTTCGTCGCAGCACCCCCGTGGGCACGGATT GCATACTTGATCATGACTAGTGGCCTCGAAGAACTTCACAAAACCAAGAG ACTAATCAAGGTACGGTTCTCCAAGTTTTGTTGTTGGAAGCATAATCGAG TGATCATCTGCATGTTACGAAGCAGGTGATCTCACACGCTCAGTACGTAC AAACGATGTACGTACAAACGATATACGTACAGTATGTAAAATTTCCAGGT CGGCAATCGAAAATTAATTGGAAGGCTATCGTCCAGTCGGCTCTCAAATT TCTTTGACAGGCCATTTATGACACGAAAAAATTCTACCTGGTGCACCTAG ACCGCAAGAGCGACGCGTCGATAAGGGCAAACCTCGAGGACTTCATCAGC ACTTGGGATGATGTCAGGTACAGCACCGCGGATTTTTAGCGTCCAAATAT TTTTTCTGGGTGTTGCCTTGAAGGCAGATAAGATAGGTAAAGACCCGTAA AGCCTCAGCATTGAACGTGGGTATCAGATGAAAACTCGAAGGTAAACTTG TTTGACGGGAATGCTTGTCTCAGGCCCGGTGGGCCTTAGCTCTTCACCTG AAGCTACCGTCTCCCCTCAGATATGGCCTGAACGTGGTCAGTAGGGGAGT GCCGAATCGCCGTGAGTCCTGGTCTACGATACCTGCCTCGCCGTACCATC TTCTTTTCGCGGTGTTTCCCGAATCGTTGTCCAGGGTGTCAAGTGTCGGG CTCAGAAGTCTCACAGTTCGTCCACACCCCCAAACCAGACAGCGCTTTGA GCTCTCTGTACACTTGTTTACACCGCGGTCGCATCCTTATGCTGCTGGAT TCTGTTGCGAAGGATGCTCGAGCCCGCGGTCGACGTGTCTTGGGGCGGCT ACACTCTAACCCTGACAGCGATCTTTGGCTTGAGCAAGATGGTGCAGTCG AGCGACGACTGGGATTACTTCATCAACCTCTCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9353:11973..13055+

>mRNA_A-nodosum_M_contig9353.1.1 ID=mRNA_A-nodosum_M_contig9353.1.1|Name=mRNA_A-nodosum_M_contig9353.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig9353:11973..13055+ (Ascophyllum nodosum dioecious)
ACACCAGCGTGGCTGACTGTTACAGCCCGCCGGGTATTGAGACAGATCTC
GGGGGAGGTTACGTTGACACCCCGGAAGCCTGTGGCATCTACACGTGTCT
TGGGGGAGTCGAAAGAGGCCTTCGTCGCAGCACCCCCGTGGGCACGGATT
GCATACTTGATCATGACTAGTGGCCTCGAAGAACTTCACAAAACCAAGAG
ACTAATCAAGGCCATTTATGACACGAAAAAATTCTACCTGGTGCACCTAG
ACCGCAAGAGCGACGCGTCGATAAGGGCAAACCTCGAGGACTTCATCAGC
ACTTGGGATGATGTCAGGATGCTCGAGCCCGCGGTCGACGTGTCTTGGGG
CGGCTACACTCTAACCCTGACAGCGATCTTTGGCTTGAGCAAGATGGTGC
AGTCGAGCGACGACTGGGATTACTTCATCAACCTCTCC
back to top