mRNA_A-nodosum_M_contig935.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig935.6.1
Unique NamemRNA_A-nodosum_M_contig935.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig935.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig935contigA-nodosum_M_contig935:92848..93509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000440.1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870417.8470066-CDS-A-nodosum_M_contig935:92847..932311680870417.8470066-CDS-A-nodosum_M_contig935:92847..93231Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig935 92848..93231 +
1680870417.8601382-CDS-A-nodosum_M_contig935:93392..935091680870417.8601382-CDS-A-nodosum_M_contig935:93392..93509Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig935 93393..93509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig935.6.1prot_A-nodosum_M_contig935.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig935 92848..93509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig935.6.1

>prot_A-nodosum_M_contig935.6.1 ID=prot_A-nodosum_M_contig935.6.1|Name=mRNA_A-nodosum_M_contig935.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=167bp
MDRSAQVGGSGSKLGFMIAFREETDVELGIKHHLTSTSLDGKGEGETTRQ
AREHFPGNSSWQDACLSRGDSDHAGWRVTERGNPILVSNTSVTPPNDQKS
YVARAWNLSGHCVLSVGMAISSTTGLSTSSPKEDINQLGKRWRCTIPLWW
PYRTNRRWFAAWDLLRR
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mRNA from alignment at A-nodosum_M_contig935:92848..93509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig935.6.1 ID=mRNA_A-nodosum_M_contig935.6.1|Name=mRNA_A-nodosum_M_contig935.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=662bp|location=Sequence derived from alignment at A-nodosum_M_contig935:92848..93509+ (Ascophyllum nodosum dioecious)
ATGGATCGCAGTGCACAGGTTGGAGGAAGCGGCAGCAAGCTGGGGTTTAT
GATAGCTTTCCGAGAAGAAACGGACGTTGAGCTCGGAATCAAGCATCATC
TCACTAGTACCAGTTTGGACGGAAAAGGAGAAGGTGAAACCACCAGGCAG
GCCAGAGAACATTTCCCGGGAAACTCGAGCTGGCAAGATGCTTGCTTATC
CAGAGGCGACTCTGACCATGCGGGGTGGCGAGTTACCGAGAGGGGGAATC
CGATACTCGTTTCTAATACTTCAGTGACACCTCCTAATGACCAAAAGTCA
TACGTGGCACGGGCGTGGAATCTCTCGGGACATTGCGTGCTGTCAGTTGG
AATGGCAATCTCCTCAACGACAGGACTCTCGACGGTAAGCGTGCTTTTCT
TGTGACTGGCTCTTGTCGAGATCAACTTTGAAGAGACCTCTTGAGCTACC
AATGAATACGTCGTGAATTGCTGTTGACTTCAGATATTATTAGTCACCAG
TCGCTCCGCTCCACACCAACCTTGCTTGTCTTCTTTTCTCGCCAGTCATC
GCCAAAAGAGGACATCAACCAACTGGGAAAGCGTTGGCGTTGTACCATTC
CACTGTGGTGGCCCTATCGGACGAACCGACGATGGTTTGCCGCATGGGAT
CTCCTGAGGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig935:92848..93509+

>mRNA_A-nodosum_M_contig935.6.1 ID=mRNA_A-nodosum_M_contig935.6.1|Name=mRNA_A-nodosum_M_contig935.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=501bp|location=Sequence derived from alignment at A-nodosum_M_contig935:92848..93509+ (Ascophyllum nodosum dioecious)
ATGGATCGCAGTGCACAGGTTGGAGGAAGCGGCAGCAAGCTGGGGTTTAT
GATAGCTTTCCGAGAAGAAACGGACGTTGAGCTCGGAATCAAGCATCATC
TCACTAGTACCAGTTTGGACGGAAAAGGAGAAGGTGAAACCACCAGGCAG
GCCAGAGAACATTTCCCGGGAAACTCGAGCTGGCAAGATGCTTGCTTATC
CAGAGGCGACTCTGACCATGCGGGGTGGCGAGTTACCGAGAGGGGGAATC
CGATACTCGTTTCTAATACTTCAGTGACACCTCCTAATGACCAAAAGTCA
TACGTGGCACGGGCGTGGAATCTCTCGGGACATTGCGTGCTGTCAGTTGG
AATGGCAATCTCCTCAACGACAGGACTCTCGACGTCATCGCCAAAAGAGG
ACATCAACCAACTGGGAAAGCGTTGGCGTTGTACCATTCCACTGTGGTGG
CCCTATCGGACGAACCGACGATGGTTTGCCGCATGGGATCTCCTGAGGCG
C
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