mRNA_A-nodosum_M_contig9317.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9317.1.1
Unique NamemRNA_A-nodosum_M_contig9317.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.970e-24
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  165 PGNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVEWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            P  +LYFE GKD  T   L+RC RGTNDLEGFH HMR LV WC+   L   LLLE  YRWNL +S+ NRGLD ++GGF
Sbjct:  437 PNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGF 514
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.520e-23
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  165 PGNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVEWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            P  +LYFE GKD  T   L+RC RGTNDLEG+H HMR LV WC+   L   LLLE  YRWNL +S+ NRGLD ++GGF
Sbjct:  262 PNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGF 339
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.240e-23
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  165 PGNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVEWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            P  +LYFE GKD  T   L+RC RGTNDLEG+H HMR LV WC+   L   LLLE  YRWNL +S+ NRGLD ++GGF
Sbjct:  835 PNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGF 912
[Close]
BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.690e-15
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3 
Query:  168 GNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLV-EWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGG 395
            G ++YF  GK++  G+T YRC RGTND+EG+H+++R+L+  +C    L   +LLE  YRWNL   I NRGL  ++GG
Sbjct:  633 GMAMYFAIGKNKH-GLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGG 708
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.310e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3 
Query:  168 GNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVE-WCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            G  LYFE+GK   TG+T +RC RGTN  EG+H+++++L+  +C    +   +L+E  +RWN+ R++ NRG+   IGGF
Sbjct:  387 GVPLYFERGKTS-TGLTRFRCVRGTNSTEGYHRYLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGF 463
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 9.490e-13
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:  168 GNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLV-EWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIG 392
            G ++Y+  GK    G+  YRC RGTND+EG+H+++R+L+  +C    L   +LLE  +RWNL   + NRGL   +G
Sbjct:  677 GVAMYYAVGKT-TDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELG 751
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 6.010e-12
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:  165 PGNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVE-WCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            P   LYF +G+    G+ +YRCARGTN  EG+H+HMR L+  +     L   LLLE  +RWN+  ++ NRGL    GGF
Sbjct:  566 PDIPLYFLEGRTSQ-GLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGF 643
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A6H5K996_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K996_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.500e-11
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:  207 TGVTLYRCARGTNDLEGFHKHMRSL-VEWCVGEGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF 398
            +G   YRC RG N  EG+H+++R+L   +C    +   +L+E  YRWN+ R++ NRG+   IGGF
Sbjct:   80 SGHKFYRCVRGKNSAEGYHRYLRTLFANFCASPWVCHSVLMEFNYRWNISRAVDNRGMVAEIGGF 144
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A2K3DNP9_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DNP9_CHLRE)

HSP 1 Score: 58.2 bits (139), Expect = 2.970e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 FIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREVLDAVERLRVHIKTGCISD 162
            FIPP  ELLERF  VV+ Y   +D  T   LL  + LDA+ER+R+HIK G +SD
Sbjct:  407 FIPPPKELLERFEKVVAQYERQIDMSTGARLLNTDTLDAIERVRLHIKEGRLSD 460
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BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Match: A0A1C7MXL8_9FUNG (Uncharacterized protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7MXL8_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 5.880e-7
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 3 
Query:  165 PGNSLYFEKGKDQLTGVTLYRCARGTNDLEG-FHKHM-RSLVEWCVGEGLGSDLLLELIYRWNLDRSISNR 371
            PG  LY++K K    G+TLYRCARGTN LEG  H+++ R    +  G  L S +L+E   R N D    NR
Sbjct:  645 PGVQLYYKKQKKDKYGLTLYRCARGTNSLEGRVHQNLIRKFGSFGAGPELASAMLVEYRLRHNFDVGTFNR 715
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9317.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KEU8_9PHAE7.970e-2461.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE1.520e-2360.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE2.240e-2360.263'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE2.690e-1548.053'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K811_9PHAE2.310e-1443.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI9.490e-1342.113'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1Y2A9B5_9FUNG6.010e-1245.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K996_9PHAE8.500e-1141.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K3DNP9_CHLRE2.970e-753.70Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A1C7MXL8_9FUNG5.880e-745.07Uncharacterized protein n=1 Tax=Choanephora cucurb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9317contigA-nodosum_M_contig9317:2434..2831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Q9
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size398
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons1
Evalue3.5e-14
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size249
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.8848975-UTR-A-nodosum_M_contig9317:2433..25821680870412.8848975-UTR-A-nodosum_M_contig9317:2433..2582Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9317 2434..2582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.8990088-CDS-A-nodosum_M_contig9317:2582..28311680870412.8990088-CDS-A-nodosum_M_contig9317:2582..2831Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9317 2583..2831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9317.1.1prot_A-nodosum_M_contig9317.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9317 2583..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9317.1.1

>prot_A-nodosum_M_contig9317.1.1 ID=prot_A-nodosum_M_contig9317.1.1|Name=mRNA_A-nodosum_M_contig9317.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MYQRQPGNSLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLVEWCVG
EGLGSDLLLELIYRWNLDRSISNRGLDGSIGGF
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mRNA from alignment at A-nodosum_M_contig9317:2434..2831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9317.1.1 ID=mRNA_A-nodosum_M_contig9317.1.1|Name=mRNA_A-nodosum_M_contig9317.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=398bp|location=Sequence derived from alignment at A-nodosum_M_contig9317:2434..2831+ (Ascophyllum nodosum dioecious)
TTCATTCCGCCCAGCGACGAGCTGCTAGAACGCTTCAACCTCGTCGTGAG
TGTATATGGTCACCTGTTGGACAGCAAGACCAAGAAGCCCCTCCTTCGAC
GGGAGGTGTTGGACGCTGTTGAGCGACTGCGGGTCCACATCAAGACAGGA
TGTATCAGCGACAGCCCGGCAATTCGCTCTACTTCGAGAAAGGCAAGGAT
CAGCTCACGGGTGTAACGCTCTACCGATGTGCGCGCGGCACCAACGATCT
CGAGGGCTTTCACAAGCATATGCGTAGCCTGGTCGAGTGGTGCGTCGGGG
AGGGTTTGGGGAGCGATCTTCTTCTGGAGTTGATCTATCGCTGGAACTTG
GACCGGAGCATCAGCAACAGAGGTCTTGATGGCTCCATCGGTGGTTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9317:2434..2831+

>mRNA_A-nodosum_M_contig9317.1.1 ID=mRNA_A-nodosum_M_contig9317.1.1|Name=mRNA_A-nodosum_M_contig9317.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9317:2434..2831+ (Ascophyllum nodosum dioecious)
ATGTATCAGCGACAGCCCGGCAATTCGCTCTACTTCGAGAAAGGCAAGGA
TCAGCTCACGGGTGTAACGCTCTACCGATGTGCGCGCGGCACCAACGATC
TCGAGGGCTTTCACAAGCATATGCGTAGCCTGGTCGAGTGGTGCGTCGGG
GAGGGTTTGGGGAGCGATCTTCTTCTGGAGTTGATCTATCGCTGGAACTT
GGACCGGAGCATCAGCAACAGAGGTCTTGATGGCTCCATCGGTGGTTTC
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