mRNA_A-nodosum_M_contig93.75.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: D7G5Q7_ECTSI (Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5Q7_ECTSI) HSP 1 Score: 170 bits (431), Expect = 2.410e-47 Identity = 106/172 (61.63%), Postives = 124/172 (72.09%), Query Frame = 2
Query: 149 MSISVCACATAMAVTARFAEAFVPALGGRAGLIRVDSLRTETSPVSASRPNNAFSRTYFGTSGLSTSSRVAIGRPSSSKTTTTAMALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANAAKTTM-IETE--AVVDAQPATKKEEEQKA 655
M ++ C A A+ AR AEAFVPAL GRAG++ + SP +A R NAFS T +G+ + SSR GRPSS +TTT M LFGLGAPEIAVC+AVAA+ILGPDK+AG AKD GKMAGELKDVPKEFQAG+ EGEA KT IE+ AV DA+PATKKEEE+KA
Sbjct: 1 MKLACCVLVWACALAARVAEAFVPALAGRAGIMSAAGRQASMSPAAAGR-QNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTT-MGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKTIREIESNGLAVEDAEPATKKEEEEKA 170
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A1E7F4Y7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Y7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.850e-17 Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANAAKTTMIETEAVV 613
M LFGLGAPE+ + L AA +LGPDKLA KD GK+AGELK+VPKEFQAG+AEGEANA K + E VV
Sbjct: 63 MGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMKIAEEAEVV 133
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A7S4A8R7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8R7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.000e-16 Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANA-AKTTMIETEAVVDAQPATK 634
M LFGLGAPE+ + L AA +LGPDKLA + KD GK+AGELK+VPKEFQAG+AEGEA+A A E EA V + TK
Sbjct: 64 MGLFGLGAPEVGIILVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGLAEGEASAKAMKDKQEAEAAVIVEKETK 142
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A7S2XUZ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUZ2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.140e-16 Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANAAKTTMIETEAVVDAQPATKKEEEQK 652
M LFGLGAPEIAVC+ VAA++LGPDKL A+D GKMAGELK+VPKEFQ G+ EG+ + +E + + A KK EE+K
Sbjct: 67 MGLFGLGAPEIAVCVIVAALVLGPDKLISSARDVGKMAGELKEVPKEFQKGLEEGK----EAARLEMAQIKEEATAEKKVEEEK 146
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A835YSI8_9STRA (Tha4/Hcf106 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.980e-16 Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEAN 574
M LFGLGAPEIAV + VAA++LGP+KL AKD GKMAGELK+VPKEFQAGI EGEA+
Sbjct: 68 MGLFGLGAPEIAVIIVVAALVLGPEKLTSFAKDAGKMAGELKEVPKEFQAGIDEGEAS 125
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A6V1V9D4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V9D4_HETAK) HSP 1 Score: 86.3 bits (212), Expect = 2.370e-16 Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANA 577
M LFGL APE+ VCLAVAA+ILGPDKL G AKD GK+AGELK+VPKEFQAG+ EG+ A
Sbjct: 71 MQLFGLSAPELLVCLAVAALILGPDKLIGSAKDLGKIAGELKEVPKEFQAGMEEGKEKA 129
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A448ZFG6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFG6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.260e-16 Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2
Query: 401 MALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANA 577
M LFGLGAPEI + L AA +LGPDKLA + KD GK+AGELK+VPKEFQAG+AEGEA+A
Sbjct: 61 MGLFGLGAPEIGIVLVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGMAEGEASA 119
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A7S2K8J1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8J1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.230e-15 Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 2
Query: 347 SSRVAIGRP---SSSKTTTTAMALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANAAKTTMIETEAVVDAQ 622
S+ V +G P ++S+ T LFGLG PEIA+ L AA +LGP+KLA + KD GKMAGELK+VPKEFQAGI EGE NA K +T A V+ Q
Sbjct: 69 SNSVVVGAPRTCAASQRQTQLHGLFGLGGPEIAIILVAAAFLLGPEKLAELGKDAGKMAGELKEVPKEFQAGIEEGEKNA-KAMKAKTTAPVEEQ 162
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A8J2SN64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN64_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.540e-15 Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 2
Query: 407 LFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEA 571
LFGLGAPE+ V L + A +LGPDKLA +AKDFGK+AGELKDVPKEF+ G+ EGEA
Sbjct: 74 LFGLGAPELVVILGLGAFVLGPDKLASMAKDFGKVAGELKDVPKEFKEGLEEGEA 128
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Match: A0A7S2SMJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMJ0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.920e-14 Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 2
Query: 365 GRPSSSKTTTTAMALFGLGAPEIAVCLAVAAVILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIAEGEANA 577
G P+ S+ T M LFGLGAPEIAV + VA +LGP KLA +A+D GK+AGELKDVP+EFQ G++EGE A
Sbjct: 89 GAPARSQVVT--MGLFGLGAPEIAVIVGVAGFVLGPQKLAEMARDMGKVAGELKDVPREFQEGLSEGEKEA 157 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig93.75.1 >prot_A-nodosum_M_contig93.75.1 ID=prot_A-nodosum_M_contig93.75.1|Name=mRNA_A-nodosum_M_contig93.75.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp MKLMSISVCACATAMAVTARFAEAFVPALGGRAGLIRVDSLRTETSPVSAback to top mRNA from alignment at A-nodosum_M_contig93:927000..931768- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig93.75.1 ID=mRNA_A-nodosum_M_contig93.75.1|Name=mRNA_A-nodosum_M_contig93.75.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4769bp|location=Sequence derived from alignment at A-nodosum_M_contig93:927000..931768- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig93:927000..931768- >mRNA_A-nodosum_M_contig93.75.1 ID=mRNA_A-nodosum_M_contig93.75.1|Name=mRNA_A-nodosum_M_contig93.75.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig93:927000..931768- (Ascophyllum nodosum dioecious)back to top |