mRNA_A-nodosum_M_contig93.50.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig93.50.1
Unique NamemRNA_A-nodosum_M_contig93.50.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig93contigA-nodosum_M_contig93:601187..601697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size511
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870402.327997-UTR-A-nodosum_M_contig93:601186..6013801680870402.327997-UTR-A-nodosum_M_contig93:601186..601380Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 601187..601380 -
1680870402.3584526-UTR-A-nodosum_M_contig93:601695..6016971680870402.3584526-UTR-A-nodosum_M_contig93:601695..601697Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 601696..601697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870402.3404856-CDS-A-nodosum_M_contig93:601380..6016951680870402.3404856-CDS-A-nodosum_M_contig93:601380..601695Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 601381..601695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig93.50.1prot_A-nodosum_M_contig93.50.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig93 601381..601695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig93.50.1

>prot_A-nodosum_M_contig93.50.1 ID=prot_A-nodosum_M_contig93.50.1|Name=mRNA_A-nodosum_M_contig93.50.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp
MAKRDFDDIIYAELAQESSDNMPPNKTVRFKIPKQEQQHTVEFTFRLNKP
NTTAIAPQPKVGNNKIPSKSQKRRLRRKKAKQLRQVHPHNQGPMHPGTRP
KHRR*
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mRNA from alignment at A-nodosum_M_contig93:601187..601697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig93.50.1 ID=mRNA_A-nodosum_M_contig93.50.1|Name=mRNA_A-nodosum_M_contig93.50.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=511bp|location=Sequence derived from alignment at A-nodosum_M_contig93:601187..601697- (Ascophyllum nodosum dioecious)
AAATGGCGAAGCGTGACTTTGACGATATCATATATGCTGAGCTTGCACAA
GAATCGAGCGACAACATGCCACCAAACAAGACAGTACGCTTCAAAATCCC
TAAGCAGGAGCAGCAACACACCGTGGAATTCACATTTCGGTTAAACAAAC
CCAACACGACCGCAATCGCCCCACAACCTAAGGTCGGGAATAACAAGATC
CCATCCAAAAGCCAAAAGCGGAGGCTACGGCGGAAAAAAGCGAAACAACT
TCGCCAAGTTCATCCACACAACCAAGGCCCCATGCATCCGGGCACGCGCC
CCAAGCACCGCAGATAGTTATTAATCTAGGACATAGCACATAAGGGTAAC
AACAGGCAGTTGCACGCCGCGACAGTGGTTTGAACTATACCTGGCAATCG
GGTAGACCCCTGCAGATTTTTTTTTATAGTACCGGTTACATATTATAGAG
AAGGCACTGTCGCGATTTTTTTTCCTTGTTTCACCTCAGGCCCCCTTCGT
TCCCTCCTGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig93:601187..601697-

>mRNA_A-nodosum_M_contig93.50.1 ID=mRNA_A-nodosum_M_contig93.50.1|Name=mRNA_A-nodosum_M_contig93.50.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig93:601187..601697- (Ascophyllum nodosum dioecious)
ATGGCGAAGCGTGACTTTGACGATATCATATATGCTGAGCTTGCACAAGA
ATCGAGCGACAACATGCCACCAAACAAGACAGTACGCTTCAAAATCCCTA
AGCAGGAGCAGCAACACACCGTGGAATTCACATTTCGGTTAAACAAACCC
AACACGACCGCAATCGCCCCACAACCTAAGGTCGGGAATAACAAGATCCC
ATCCAAAAGCCAAAAGCGGAGGCTACGGCGGAAAAAAGCGAAACAACTTC
GCCAAGTTCATCCACACAACCAAGGCCCCATGCATCCGGGCACGCGCCCC
AAGCACCGCAGATAG
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