mRNA_A-nodosum_M_contig93.45.4 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: A0A6H5KNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ3_9PHAE) HSP 1 Score: 363 bits (932), Expect = 8.120e-102 Identity = 245/487 (50.31%), Postives = 306/487 (62.83%), Query Frame = 1
Query: 2032 SEDDVIFLQFEVDAQEMELNRLLGEEAIASKAADKLEEEVHSLSALAEERETHCRYVAKALELLPNAADETSRLQREITAAESRIQADQKSFGKTMKPLEEMVRAQREELARRKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGE------GLVDEDWEEAR-RRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVP----SNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGS-SVMFLIRDLKRVREDAFALEQMLDELLEEQRXXXXXXXXXXXXXXXXXXXXXXXXXXVIAEGVEEIEEGLVGAASPEQGVHFGPEPAEER------QEEANAKKGLGQEEHFDESGAAGFDD------------GAGNEGRSDEDEVDFIGDEEEDNVWQ 3402
+EDDV+FLQFEV+A+E+EL RLL E KAAD+LE+EV L +LAEERE HCRY AKALELLPNAA ETSR+Q E AAE+R+ A K+F K KPLE +VR QRE+LARRKARCR L++E+R Y E +EMS QES L A+ARDME WE RG++VIG E+G D G D EEAR RR AGA+LR+ ID RI LC++A AQKQ+I ISL+E+LDSRREAN AW+LLGRAEAL EE++FSAAK+A +NKDRA+DL EAYK L+ L VFS +VEA+S + +REEEC+ VE ET +MLS+ GG+ + L RDL+RV+ DAFALEQ LD+ LEE+R E V E +E V + AE++ QE A + E DE AAG ++ GAG + + E DF+G++E DNVWQ
Sbjct: 746 TEDDVVFLQFEVEAKELELKRLLAEREGQDKAADELEKEVQRLGSLAEEREKHCRYAAKALELLPNAAAETSRMQNECVAAEARMHAAAKAFEKGRKPLEAVVRVQREKLARRKARCRALVTEMRGMYAECQEMSQQESALMAAARDMEVWESKARGEVVIGPEKGGDXXXXXXXXXXXXXXGEEXHDSEEARKRRKAGAALRSHIDKRITSLCEDAAAQKQEIAISLTEVLDSRREANGAWELLGRAEALPEERIFSAAKQAKSGSGGTNKDRAKDLTEAYKHLHALGEVFSKIVEAMSEVGRREEECRSVERETEKMLSRQGGNVRLQLLTRDLERVKGDAFALEQRLDQALEEERLNQKASQETQDSFGAAQDVTRRDSDDNANEAVVEQDEQASCGNDTCGEVQDDDDDAEQQDLPLRAQEHGKAAESTLDVEVQDERSAAGGEERGEGEAPEQRGSGAGGDVVESDQEADFVGEDEVDNVWQ 1232
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: D7FJ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ88_ECTSI) HSP 1 Score: 358 bits (920), Expect = 8.880e-102 Identity = 216/360 (60.00%), Postives = 269/360 (74.72%), Query Frame = 1
Query: 2032 SEDDVIFLQFEVDAQEMELNRLLGEEAIASKAADKLEEEVHSLSALAEERETHCRYVAKALELLPNAADETSRLQREITAAESRIQADQKSFGKTMKPLEEMVRAQREELARRKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEG--------EDNRDDGWGEGLVDEDWEEAR-RRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVP----SNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGS-SVMFLIRDLKRVREDAFALEQMLDELLEEQR 3069
+EDDV+FLQFEV+A+E+EL RLL E + AD+LE+EV L +LAEERE HCRY AKALELLPNAA ETSR+Q+E AAE+R+ A K+F K KPLE +VR QRE+LARRKARCR L++E+R Y E ++MS QES L+A+ARD E WE RG++VIG E+G D WGE ++D EEAR RRNAGA LR+ ID RI LC++A AQKQ+I ISL+E+LDSRREAN AW+LLGRAEAL EE++FSAAK+A +NKDRA+D EAYK L+ L VFS +VEA+S + +REEEC+LVE ET +MLS+ GGS + L RDL+RV+ DAFALEQ LD+ LEE+R
Sbjct: 521 TEDDVVFLQFEVEAKELELKRLLSEGEGQDEEADELEKEVRRLGSLAEEREKHCRYAAKALELLPNAAAETSRMQKECVAAEARMHAAAKAFEKGWKPLEAVVRVQREKLARRKARCRALVTEMRGIYAECQDMSQQESALKAAARDTEVWESKARGEVVIGPEKGIGGDGXXXXXXGDAEWGE--EEDDSEEARKRRNAGAVLRSHIDKRITSLCEDAAAQKQEIAISLTEVLDSRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYKHLHALGEVFSKVVEAISEVGRREEECRLVERETEKMLSRQGGSVRLQLLTRDLERVKGDAFALEQRLDQALEEER 878
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: A0A225VS68_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VS68_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 5.920e-8 Identity = 55/216 (25.46%), Postives = 106/216 (49.07%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVR 3015
RKARCR L+ EI++ E E++G ++ + ++ ER + + G++ + + G R +RI + + QKQDI L ++ +++ NTA + L R EA+AEEKL+SAA + S+ +A +E Y++ + +F L+ VS + K+E + +++ +++ ++ S + ++ DL+ VR
Sbjct: 51 RKARCRQLIREIKAFRTEMVEITG---IIHSKMESVQALERVQERQMAKLGKK---------------------KDADGGPMTRNTYTSRIMDIIKQVHKQKQDIAKILEDIKGLQKQLNTASEKLKRTEAVAEEKLYSAASQNKASSSTKADAYVECYRKFAQVRELFEELILVVSDVGKKENAARDLQNWISQLEARDSSSHLDKVLADLESVR 242
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: G5A1Y1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1Y1_PHYSP) HSP 1 Score: 65.1 bits (157), Expect = 8.320e-7 Identity = 58/228 (25.44%), Postives = 109/228 (47.81%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNA--GASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVREDAFALEQML 3045
RKARCR L+ EI++ E +E++G S R +E+ + + + +++NA G R +RI + + QKQDI L ++ +++ N A + L R EA+AEEKLFSAA ++ S +A +E Y++ + +F L+ V + K+E + +++ +++ ++ + + ++ DL+ VR + L+Q L
Sbjct: 428 RKARCRQLIREIKAFRAEMQEITGVIHSKMESMRALEKIQERQMTKL--------------------------GKKKNAEGGPMTRNMYTSRIMDIIKQVHKQKQDIAKILDDIRGLQKQLNAASEKLKRTEAVAEEKLFSAASKSKSSISAKADAYVECYRKFAQVRELFEELILVVGDVGKKENAARDLQNWISQLEARDSSNHLDKVLADLESVRLENGTLQQEL 629
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: A0A6A3J6Y3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J6Y3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.130e-6 Identity = 56/226 (24.78%), Postives = 107/226 (47.35%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVREDAFALEQML 3045
RKARCR L+ EI++ E +E++G ++ + M E+ + I G++ + G R +RI + + QKQDI L ++ +++ N A + L R EA+AEEKL+SAA ++ S+ +A +E Y++ + +F L+ V K+E + +++ +++ ++ S + ++ DL+ VR + L+ L
Sbjct: 462 RKARCRQLIREIKAFRTEMQEITG---IIHSKMESMRALEKIQERRIAKLGKK---------------------KDSEGGPMTRNMYTSRIMDIIKQVHKQKQDIAKILEDIKGLQKQLNAASEKLKRTEAVAEEKLYSAASKSKISSSTKAEAYVECYRKFAEVRELFEELIVVVGDFGKKENAARDLQNWISQLEARDSSSHLDKVLADLESVRLENGTLQHEL 663
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: W2QST8_PHYPN (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2QST8_PHYPN) HSP 1 Score: 64.3 bits (155), Expect = 1.480e-6 Identity = 54/226 (23.89%), Postives = 107/226 (47.35%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVREDAFALEQML 3045
RKARCR L+ EI++ E E++G S + +ER + + + ++ + G R+ +RI + + QKQDI L ++ +++ NTA + L R EA+AEEKL+SAA ++ ++ + +E Y++ + +F L+ V + K+E + +++ +++ S+ + + ++ DL+ VR + L+ L
Sbjct: 454 RKARCRQLIREIKAFRTEMLEITGIIHSKMESVKALERVQERQLAKLC--------------------------KKDSDGPMTRSMYTSRIMDIIKQVHKQKQDIAKILDDIKGLQKQLNTASEKLKRTEAVAEEKLYSAASKSKSTSSTKTEAYVECYRKFAQVRELFEELILVVGDVGKKENAARDLQNWISQLESRDSSTHLDNVLADLESVRLENGTLQNEL 653
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: D0ND48_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0ND48_PHYIT) HSP 1 Score: 64.3 bits (155), Expect = 1.480e-6 Identity = 67/279 (24.01%), Postives = 131/279 (46.95%), Query Frame = 1
Query: 2212 LELLPNAADETSRLQREITA-AESRIQADQKSFGKTMKPLEEMVRAQREELARRKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVREDAFALEQML 3045
L +LP A +L+ + AE +++ Q+ G PL A + + RKARCR L+ E+++ E E+SG ++++ ++ ER + + G+ ++ G R +RI + + QKQDI L ++ +++ NTA + L R EA+AE+KL+SAA + ++ +A +E Y++ + +F L+ V + K+E + +++ +++ S+ S + ++ DL+ VR + L+ L
Sbjct: 406 LAMLPQAQANILKLEAICQSNAEKKVEISQQ-MGSARGPLLLEYAALEGQKSSRKARCRQLIREMKAFRAEMLEISG---IIQSKMESLKALERVQERQLAKLGQ----------------------KKDADGPMTRNMYTSRIMDIIKQVHKQKQDIAKILDDIKGLQKQLNTASERLKRTEAVAEDKLYSAASTSKSTSSTKADAYVECYRKFAQVRELFEELIVVVGDVGKKENAARDLQNWISQLESRDSSSHLDKVLADLESVRLENGTLQNEL 658
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: A0A329T041_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T041_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.480e-6 Identity = 54/215 (25.12%), Postives = 106/215 (49.30%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRV 3012
RKARCR L+ EI++ E E++G ++ + ++ ER + +V G++ + + G R +RI + + QKQDI L ++ +++ NTA + L R EA+AEEKL+SAA ++ ++ +A +E Y++ + +F L+ V + K+E + +++ +++ S+ S + ++ DL+ V
Sbjct: 458 RKARCRQLIREIKAFRTEMLEITG---IIHSKMESVKALERVQERQLVKLGKK---------------------KDSDGGPMTRNMYISRIMDIIKQVHKQKQDIAKILDDIKGLQKQLNTASEKLKRTEAVAEEKLYSAASKSKSTSSTKAEAYVECYRKFAQVRELFEELIVVVGDVGKKENAARDLQNWISQLESRDSSSHLDKVLADLESV 648
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Match: A0A421FMT2_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FMT2_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.760e-6 Identity = 57/226 (25.22%), Postives = 109/226 (48.23%), Query Frame = 1
Query: 2368 RKARCRDLLSEIRSKYDESEEMSGQESLLRASARDMERWERHKRGDIVIGGEEGEDNRDDGWGEGLVDEDWEEARRRNAGASLRADIDARIARLCDEALAQKQDIVISLSELLDSRREANTAWDLLGRAEALAEEKLFSAAKEAVPSNKDRARDLIEAYKRLYVLDGVFSSLVEAVSGLTKREEECQLVEDETARMLSQHGGSSVMFLIRDLKRVREDAFALEQML 3045
RKARCR L+ E+++ + E++G S R +ER H+R + D + D ++ G R ARI + + QKQDI L ++ +++ N A + L R EA+AE+KL++AA ++ SN ++ +E Y++ + +F L+ V + K+E + +++ +++ ++ S + ++ DL+ VR + L+ L
Sbjct: 306 RKARCRQLIREMKTFRSDMLELTGVIHSKMESVRALERI--HERQLAKL------DKKKD---------------CQDEGPMTRNMYTARIMDIIKQVHKQKQDITKILDDIKGLQKQMNVASEKLKRTEAVAEDKLYTAASKSKTSNSGKSEAYVECYRKFAQVRELFEELIVLVGDVGKKENIARDLQNWISQLEARDSSSHLDKVLADLESVRHENGTLQNEL 508 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.45.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig93.45.4 >prot_A-nodosum_M_contig93.45.4 ID=prot_A-nodosum_M_contig93.45.4|Name=mRNA_A-nodosum_M_contig93.45.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=922bp MRSRGSRATHATPRILGRMGFSRANSVLLMRRARAIEKMTARIRETGITRback to top mRNA from alignment at A-nodosum_M_contig93:303499..311911+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig93.45.4 ID=mRNA_A-nodosum_M_contig93.45.4|Name=mRNA_A-nodosum_M_contig93.45.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8413bp|location=Sequence derived from alignment at A-nodosum_M_contig93:303499..311911+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig93:303499..311911+ >mRNA_A-nodosum_M_contig93.45.4 ID=mRNA_A-nodosum_M_contig93.45.4|Name=mRNA_A-nodosum_M_contig93.45.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=2766bp|location=Sequence derived from alignment at A-nodosum_M_contig93:303499..311911+ (Ascophyllum nodosum dioecious)back to top |