mRNA_A-nodosum_M_contig9289.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9289.1.1
Unique NamemRNA_A-nodosum_M_contig9289.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A1E7FGD1_9STRA (General substrate transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGD1_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.710e-54
Identity = 96/173 (55.49%), Postives = 121/173 (69.94%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL+GINA+FYYSNSFF G+ID PLVGTT+VGGV+ +ATY+ALL                GM +S +VV + LLG +  + AV  V  FVFFFEIGLGPIPW IV EMFD KY A AMS+  Q+NW  N +V   +P M++ +GPYSFV F ++L   F++TLFYLPET G++
Sbjct:  264 QQLSGINAVFYYSNSFFDGIIDDPLVGTTIVGGVNVIATYVALLVMDKTGRKTLILCSSAGMFLSCIVVVVALLGLVNNMFAVLAVNAFVFFFEIGLGPIPWLIVAEMFDGKYVAMAMSMCSQLNWVCNVIVGSVFPYMNKYLGPYSFVPFASVLACTFVYTLFYLPETQGKT 436          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S2HEM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEM2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.200e-53
Identity = 92/168 (54.76%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    4 QLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPET 462
            QL GINA+FYYS +FF GVID PL+GTT+VG V+ VATY+ALL               GGM I  +V+ ++LLG++  I+A+  V  +V FFEIGLGPIPW IV EMFDAKY  TAM+ +CQ+NWA NFVV + +P ++E +G +SFV F T+LL+ F+F  F LPET
Sbjct:    1 QLCGINAVFYYSTTFFEGVIDDPLLGTTIVGAVNVVATYVALLLMDSCGRRTLILWSSGGMFICCIVIVLSLLGFLNNIMALLAVNVYVSFFEIGLGPIPWLIVAEMFDAKYVTTAMAASCQLNWACNFVVGLVFPYLNEYLGAFSFVPFATVLLLTFIFAAFKLPET 168          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A835ZG82_9STRA (Solute carrier family facilitated glucose transporter member 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG82_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.440e-52
Identity = 97/173 (56.07%), Postives = 118/173 (68.21%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL+GINA+FYYS SFF G++  PLVGT   G V+ +ATY AL                GGM +S + +T +LLG  P  VA+ GVM FV FFEIGLGPIPW IV EMFDAKY ATAMS+A QVNWA NFVV +G+P++  A+GP+ FV F  +L   FLF+L  LPET GR+
Sbjct:  369 QQLSGINAVFYYSTSFFDGIVADPLVGTAAAGTVNVLATYAALKLMDRCGRVTLLLWSSGGMFLSCIAITASLLGIAPNYVALLGVMAFVSFFEIGLGPIPWLIVAEMFDAKYVATAMSIASQVNWAFNFVVGLGFPMLSRALGPWVFVPFAAVLAAVFLFSLLMLPETAGRT 541          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S1BUZ7_9STRA (Hypothetical protein n=5 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUZ7_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.930e-52
Identity = 96/173 (55.49%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS +FF G+ID+PLVGTT +  V+ VATY+ALL               GGMLIS +V+ + LLGY+P +VA+  V  +V FFEIGLGPIPW IV EMFDAKY ATAMS++ QVNW  NF+V + +P + E +  YSF  FG +LL+ FLF  F LPET G +
Sbjct:  352 QQLCGINAVFYYSTAFFEGIIDNPLVGTTTICAVNVVATYVALLLMDSCGRRVLILWSSGGMLISVIVIVLALLGYMPNVVALIAVNVYVSFFEIGLGPIPWLIVAEMFDAKYVATAMSLSSQVNWTCNFIVGLVFPYLDEYLHAYSFAPFGIVLLMTFLFAAFKLPETQGTT 524          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: I2CP18_NANGC (Solute carrier family facilitated glucose transporter member 3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP18_NANGC)

HSP 1 Score: 182 bits (462), Expect = 1.600e-51
Identity = 96/173 (55.49%), Postives = 118/173 (68.21%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIAL---------------LGGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS  FF G+I  PL GT LV  V+ +ATY+AL                 GML S V+VTM L   +P +VA+ GVM FVFFFEIGLGPIPW IV EMFD KY AT+MS++CQVNWA NF++ IG+P ++  +G  SFV FG +L +   +T FYLPETLGR+
Sbjct:  368 QQLCGINAVFYYSTMFFQGLIADPLEGTILVASVNVIATYVALKLMDTCGRRTLVLWSASGMLFSCVMVTMALYHVVPDVVALLGVMLFVFFFEIGLGPIPWLIVAEMFDQKYVATSMSLSCQVNWACNFIIGIGFPFINAWLGKASFVPFGIVLALTLSYTYFYLPETLGRT 540          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S2UII2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UII2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.710e-50
Identity = 92/173 (53.18%), Postives = 117/173 (67.63%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS  FF GVI +PLVGTT+VG V+ VATY+AL+               GGM I  +++ ++LLG+    VA+  V  +V FFEIGLGPIPW IV EMFDAKY   AMS  CQ+NWA NF+V + +P M++ +GPYSFV F  +LL  F+F L +LPET G +
Sbjct:  226 QQLCGINAVFYYSTMFFEGVISNPLVGTTVVGAVNVVATYVALMLMDSCGRRTLILWSSGGMFICCIMIVLSLLGFFNHFVALLAVNLYVSFFEIGLGPIPWLIVAEMFDAKYVTIAMSACCQLNWACNFIVGLVFPYMNKYLGPYSFVPFAVVLLGTFIFALIWLPETQGTT 398          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S2S0R8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0R8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.360e-50
Identity = 87/173 (50.29%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS SFF GVID+PL+GT +V  V+  AT++A +               GGM++S V++T  L+  +P  +A+  V+++V FFEIGLGPIPW IV EMFDAKY ATA S+ CQ+NW  NF++ + +P ++ A+G ++FV F  +L+ AF+FT  YLPETL RS
Sbjct:  153 QQLCGINAVFYYSTSFFNGVIDNPLLGTVIVAAVNVAATWLAQILMDRCFRRTLLLWSAGGMILSLVILTAALMQVVPNYMALVSVISYVAFFEIGLGPIPWLIVAEMFDAKYVATAQSLVCQINWVCNFIIGVAFPSLNAALGVWTFVPFAIVLVFAFIFTALYLPETLNRS 325          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S2S8N5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8N5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.010e-50
Identity = 94/173 (54.34%), Postives = 116/173 (67.05%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS +FF GVI +PLVGTT+VG V+ VATYIALL               GGM I  +++ + LLGY    VA+  V  +VFFFEIGLGPIPW IV EMFDAKY A AMS  CQ+NWA NF+V + +P M E +  YSFV F  +LL  F++ + +LPET G +
Sbjct:  197 QQLCGINAVFYYSTTFFEGVIPNPLVGTTIVGVVNVVATYIALLLMDKCGRRTLILWSSGGMFICCIILVVALLGYFSHFVALLAVNLYVFFFEIGLGPIPWLIVAEMFDAKYVAIAMSACCQLNWACNFLVGLIFPYMKEHLKEYSFVPFAFVLLFVFIYAIVWLPETQGTT 369          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S2KYN2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYN2_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.750e-50
Identity = 94/173 (54.34%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS SFF G+ID+PLVGTT+VG V+ +ATY ALL               GGM      + M LLGY   I+A+  V  +V FFEIGLGPIPW IV EMFDAKY ATAMSV+ QVNW  NF++ I +P ++  +GPYSFV F  +L   F+F L +LPET G +
Sbjct:  406 QQLCGINAVFYYSTSFFEGIIDNPLVGTTIVGAVNVLATYAALLLMDSCGRRTLILYSSGGMFXXXXXIVMALLGYFQNIIALLAVNIYVSFFEIGLGPIPWLIVAEMFDAKYVATAMSVSSQVNWTCNFIIGISFPYLNLYLGPYSFVPFAAVLFCTFMFALIWLPETQGTT 578          
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Match: A0A7S4RK18_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RK18_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.850e-49
Identity = 94/173 (54.34%), Postives = 116/173 (67.05%), Query Frame = 1
Query:    1 QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALL---------------GGMLISTVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFATAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFYLPETLGRS 474
            QQL GINA+FYYS SFF GVID+PL+GTT+VG V+ VATY+ALL               GGM +  VV+ ++LLGY   IVA+  V  +V FFEIGLGPIPW IV EMFDAKY  TAM+   Q+NW  NFVV   +P ++E +GPYSFV F  +L + F+F    LPET G +
Sbjct:  463 QQLCGINAVFYYSTSFFEGVIDNPLLGTTIVGAVNVVATYVALLLMDSCGRRTLILWSSGGMFMCCVVIVLSLLGYFQNIVALLAVNVYVSFFEIGLGPIPWLIVAEMFDAKYVTTAMAACSQLNWVCNFVVGFVFPYLNEYLGPYSFVPFAIVLALTFIFAALKLPETQGTT 635          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7FGD1_9STRA4.710e-5455.49General substrate transporter n=1 Tax=Fragilariops... [more]
A0A7S2HEM2_9STRA1.200e-5354.76Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A835ZG82_9STRA2.440e-5256.07Solute carrier family facilitated glucose transpor... [more]
A0A7S1BUZ7_9STRA5.930e-5255.49Hypothetical protein n=5 Tax=Corethron hystrix Tax... [more]
I2CP18_NANGC1.600e-5155.49Solute carrier family facilitated glucose transpor... [more]
A0A7S2UII2_9STRA1.710e-5053.18Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2S0R8_9STRA2.360e-5050.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S8N5_9STRA4.010e-5054.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2KYN2_9STRA4.750e-5054.34Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4RK18_9STRA1.850e-4954.34Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9289contigA-nodosum_M_contig9289:10665..11477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps268472
PFAMsSugar_tr
Model size474
Max annot lvl2836|Bacillariophyta
KEGG koko:K08142
KEGG TC2.A.1.1.12
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.42e-49
EggNOG OGsCOG0477@1|root,KOG0569@2759|Eukaryota,2XFER@2836|Bacillariophyta
DescriptionBelongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Cds size474
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870401.5526946-CDS-A-nodosum_M_contig9289:10664..108481680870401.5526946-CDS-A-nodosum_M_contig9289:10664..10848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9289 10665..10848 -
1680870401.649317-CDS-A-nodosum_M_contig9289:11142..113041680870401.649317-CDS-A-nodosum_M_contig9289:11142..11304Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9289 11143..11304 -
1680870401.6616387-CDS-A-nodosum_M_contig9289:11349..114771680870401.6616387-CDS-A-nodosum_M_contig9289:11349..11477Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9289 11350..11477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9289.1.1prot_A-nodosum_M_contig9289.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9289 10665..11477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9289.1.1

>prot_A-nodosum_M_contig9289.1.1 ID=prot_A-nodosum_M_contig9289.1.1|Name=mRNA_A-nodosum_M_contig9289.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
QQLTGINAIFYYSNSFFVGVIDSPLVGTTLVGGVSAVATYIALLGGMLIS
TVVVTMTLLGYIPIIVAVFGVMTFVFFFEIGLGPIPWPIVGEMFDAKYFA
TAMSVACQVNWASNFVVSIGWPLMHEAMGPYSFVTFGTILLVAFLFTLFY
LPETLGRS
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mRNA from alignment at A-nodosum_M_contig9289:10665..11477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9289.1.1 ID=mRNA_A-nodosum_M_contig9289.1.1|Name=mRNA_A-nodosum_M_contig9289.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at A-nodosum_M_contig9289:10665..11477- (Ascophyllum nodosum dioecious)
CAGCAGCTGACTGGAATCAATGCTATTTTTTATTATTCCAACAGCTTCTT TGTGGGCGTCATTGACAGCCCTCTTGTGGGCACAACCTTGGTAGGCGGCG TCAGCGCTGTTGCCACCTACATCGCCCTGTAGCTTATGGAATCGACGGGC CGCGTGCCGCTAATGCTGTAGAGCCTTGGAGGCATGCTGATATCTACTGT GGTCGTAACAATGACCCTGCTTGGCTACATTCCGATCATCGTGGCCGTGT TCGGGGTGATGACCTTTGTCTTCTTTTTCGAGATCGGTCTTGGCCCAATT CCTTGGCCCATCGTGGGAGAAATGTTCGACGCCAAGTAGGACAAAGGGGA GGGAGGGTAGAGGAGGAACGCACGAGGCATATTTAGTTTGAGTAGCACGA GAGTACTATTTTTTTTGTTTTTTTGTTTTTTTGTGGATGACCTACACTAG GTAGATTATTCAATATGTTTCTTTGCTGTGGCGAATATAGTGTTGATGGT TTCGTGGTGAACTGAATCACTCCCGAAAAAGGGGAACTTCGGCGTTTTCC CGCAAGTATCCCTCTAGTCCACCCCTATCCCCGAATATAACGCTTATATT TAAATGCATATGATCGCTATCGTCTTCAGGTACTTCGCCACGGCGATGTC CGTGGCGTGCCAAGTTAACTGGGCGTCGAACTTCGTCGTTAGCATCGGGT GGCCTCTCATGCATGAGGCCATGGGCCCCTACAGCTTCGTTACATTCGGT ACCATCCTGCTGGTTGCTTTCCTCTTCACGCTCTTCTACCTCCCAGAGAC ATTGGGGAGGTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9289:10665..11477-

>mRNA_A-nodosum_M_contig9289.1.1 ID=mRNA_A-nodosum_M_contig9289.1.1|Name=mRNA_A-nodosum_M_contig9289.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig9289:10665..11477- (Ascophyllum nodosum dioecious)
CAGCAGCTGACTGGAATCAATGCTATTTTTTATTATTCCAACAGCTTCTT
TGTGGGCGTCATTGACAGCCCTCTTGTGGGCACAACCTTGGTAGGCGGCG
TCAGCGCTGTTGCCACCTACATCGCCCTCCTTGGAGGCATGCTGATATCT
ACTGTGGTCGTAACAATGACCCTGCTTGGCTACATTCCGATCATCGTGGC
CGTGTTCGGGGTGATGACCTTTGTCTTCTTTTTCGAGATCGGTCTTGGCC
CAATTCCTTGGCCCATCGTGGGAGAAATGTTCGACGCCAAGTACTTCGCC
ACGGCGATGTCCGTGGCGTGCCAAGTTAACTGGGCGTCGAACTTCGTCGT
TAGCATCGGGTGGCCTCTCATGCATGAGGCCATGGGCCCCTACAGCTTCG
TTACATTCGGTACCATCCTGCTGGTTGCTTTCCTCTTCACGCTCTTCTAC
CTCCCAGAGACATTGGGGAGGTCT
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