mRNA_A-nodosum_M_contig928.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig928.14.1
Unique NamemRNA_A-nodosum_M_contig928.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.390e-87
Identity = 144/261 (55.17%), Postives = 189/261 (72.41%), Query Frame = 2
Query:  203 PKVDASQKQVSIYSLYAA----DVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRKYFASLF 973
            P+V AS   +   + YA     DV +   +SF+VSP ITI+DR+I  NASG M+ GDSIR G+KE+++RPHVF  RPEFLMI+GVY+ATY TAN + TTC+  KVD  WP+F+ T+ VN+T+ +AKD AFTRMF +  P  +P++TY LFT+RD  TV ASFN+P P S++LQ + GMS+  AD TAQ+ CPA+VQ LSTP++L+G+DLYNNP  T   R  F+  +Y S++  R+ R GPAFGIGGVGNTAFRK   + F
Sbjct:   18 PEVKASAPALRNNAAYATHLGLDVLSAFGASFMVSPFITIVDRSIIQNASGVMQMGDSIRAGIKELVMRPHVFLRRPEFLMIFGVYSATYTTANAVNTTCEHRKVDSAWPRFLSTSAVNMTSCIAKDRAFTRMFGSSAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLRARF 277          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A433PI02_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI02_9FUNG)

HSP 1 Score: 228 bits (581), Expect = 4.000e-65
Identity = 118/238 (49.58%), Postives = 161/238 (67.65%), Query Frame = 2
Query:  245 LYAADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGM--SEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFR 952
            LY+ D AA   +SFLVSP ITI+DR+I  NA+G       +R+G++ +++RPH F   P+F +I G+Y +TY+TAN + TTC+  + + + PKF+ TT VN++  + KD AFTRMF     RP+P+ATY LF  RD +TVAASFN P   S  L  R+G    +++ADV AQL CPA+VQ LSTP++LLG+DLYN P  +   R   + REY  + + R+AR GPAFGIGG+GN  FR
Sbjct:   44 LYSVDAAAAFLASFLVSPFITIVDRSIIENANGKTPLATGLRQGLQHLVIRPHRFVVTPQFRLILGLYFSTYLTANAVTTTCEHLERNASAPKFVSTTLVNMSFCIYKDRAFTRMFGLTAARPLPLATYGLFASRDALTVAASFNAPEVVSATLL-RYGAVWDKRSADVVAQLACPAAVQFLSTPVHLLGLDLYNRPGVSAGQRITLVGREYFKSAIARIARIGPAFGIGGIGNAGFR 280          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A0L0FIC5_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIC5_9EUKA)

HSP 1 Score: 226 bits (576), Expect = 5.140e-65
Identity = 116/235 (49.36%), Postives = 156/235 (66.38%), Query Frame = 2
Query:  251 AADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRK 955
            A DV A LA++F VSP ITI+DR+I MNASGA K G ++  GVK++   P  F    +F +IWG+Y ATYV AN++ T  + +K D   PKF+ TT VN +  +AKD AFTRMF T+ P  +PI +Y LF VRD  T+ ASF++P   + ++ + +G   K A   AQL+CP +VQL+STPM+LLG+DLYNN   T   RA F+ REY  +   R++R  PAFGIGG+ N  FR+
Sbjct:   27 AIDVGAALAAAFCVSPIITIVDRSIIMNASGAQKLGSALVGGVKQLTFTPTSFIRGLDFRLIWGLYTATYVVANVVDTVSELNKKDSAMPKFVVTTAVNGSLCIAKDRAFTRMFGTIAPTSLPIGSYGLFAVRDMATIGASFSLPVKVADHMHDEYGYDRKRALFAAQLLCPMAVQLVSTPMHLLGLDLYNNKTATTSQRASFVGREYLKSTAARISRIAPAFGIGGISNRHFRE 261          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.180e-63
Identity = 118/239 (49.37%), Postives = 159/239 (66.53%), Query Frame = 2
Query:  257 DVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRKYFASLF 973
            D+AA +A+S  V+P ITI+DRAI  NASGA   G  +++   + +  P  F  + EFL+I+G+Y+ATYV+AN I T C+ ++ D+  PKFIGTT VN++  +AKD AF RMF  + P   P+A+  LF VRD +TVAASFN P   +K L++   M    A   AQLVCPA+VQ +STP++LLG+DLYNN   +   RA F+ REY  ++  R+ R GPAFGIGGVGNT FR    + F
Sbjct:   23 DLAAAMAASVSVAPFITIVDRAIIENASGARPLGVGLKQLAADFVRHPLRFVVKREFLLIFGLYSATYVSANAIDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLRTTF 261          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: K3WSU5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU5_GLOUD)

HSP 1 Score: 221 bits (562), Expect = 4.610e-63
Identity = 116/241 (48.13%), Postives = 156/241 (64.73%), Query Frame = 2
Query:  251 AADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRKYFASLF 973
            A D+AA  A+SF VSP ITI+DRAI  NASGA      I+E  K  +  P  F  + EF++++G+Y +TY +AN I T C+ ++ D+  PKF+GTT VN+T  +AKD AF +MF  V P   PI    LF +RD +TV ASFN P   +K L+   G+    A   AQL+CPA+VQ +STP++LLG+DLYNN   ++ AR +F+ REY  + V R+ R GPAFGIGGVGNT  R+   + F
Sbjct:   22 AIDLAAAAAASFAVSPFITIVDRAIIENASGARPLAVGIKELSKAFVANPFQFVRKREFIIVFGLYTSTYASANAIDTVCEWAEADNQMPKFLGTTAVNMTLCIAKDRAFAQMFGVVAPSAFPIGAIGLFAIRDSLTVGASFNAPKTVAKKLEVDGGVEPSRAKTLAQLLCPAAVQFVSTPLHLLGLDLYNNKGASVAARFRFVQREYLKSAVARIGRIGPAFGIGGVGNTYCRENLRATF 262          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP)

HSP 1 Score: 219 bits (557), Expect = 2.500e-62
Identity = 116/233 (49.79%), Postives = 153/233 (65.67%), Query Frame = 2
Query:  254 ADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFR 952
            AD  A +A+S  V+P ITI+DRAI  NASGA   G  ++E   E +  P  F  + EF +I+G+Y ATYVTAN++ + C+ ++ D+  PKFIGTT VN++  +AKD AF RMF  + P   P+ +  LF VRD MT  ASFN P   +K +++   M + NA   AQLVCPA+VQ LSTP++L+G+DLYNN    M  R  F+ REY  ++  RV R GPAFGIGGVGNT FR
Sbjct:   24 ADTVAAMAASLGVAPFITIVDRAIIENASGARPLGRGLKELSVEFLKHPLRFVGKREFHLIFGLYTATYVTANVVDSVCEYAEADNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDNGLMEKGNASTFAQLVCPAAVQFLSTPLHLMGLDLYNNKGHAMAQRVSFVQREYVKSVFARVGRIGPAFGIGGVGNTYFR 256          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A8H7BJY4_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BJY4_9FUNG)

HSP 1 Score: 218 bits (555), Expect = 6.620e-62
Identity = 120/242 (49.59%), Postives = 156/242 (64.46%), Query Frame = 2
Query:  242 SLYAADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVD---DTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRKY 958
            SLY  D+ A  +SS LVSP I I+DRAI  NA+G  K G  + +G + +  +PH F    ++ +I+G+Y  TY+TANM+ TTC++  VD    +W KF+ TT VN++  + KD AFTRMF     +P+P+ +Y+ F  RD MTVAASF  P   SK LQE+   SE +A V AQL CPA+VQ  STP++LLG+DLYN P  T+  RA  I   Y    + R AR GPAFGIGGVGNT FR Y
Sbjct:   27 SLYGVDIMAAASSSALVSPFIAIVDRAIIENANGKRKLGQGLIQGFQTLFTQPHKFVGSIQYRLIFGLYFGTYMTANMVETTCEQRSVDHVTSSWIKFLATTAVNMSVCIYKDRAFTRMFGVSAVKPLPLLSYLFFATRDSMTVAASFIAPPIVSKALQEK-EWSEDHAKVAAQLSCPAAVQFFSTPLHLLGLDLYNRPAATVGQRAGLIRSLYFKTTLARCARIGPAFGIGGVGNTYFRSY 267          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL)

HSP 1 Score: 217 bits (552), Expect = 1.270e-61
Identity = 113/233 (48.50%), Postives = 154/233 (66.09%), Query Frame = 2
Query:  257 DVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFRK 955
            DVAA   +S  VSP I I+DRAI  NASGA +  D +++   E +  P  F  R EF +++G+Y ATY +AN I T CD +  D+  PKF+GTT VN+T  +AKD AFT+MF  + P   P+A+  LF +RD MTVAASFN P   ++ LQE+  +    +   +QLVCPA+VQ +STP++L+G+DLYN+   +M  R  F+ REY  ++  R+AR GPAFGIGGVGNT  R+
Sbjct:   23 DVAAAATASLGVSPFIAIVDRAIIENASGARRLSDGVKQLSMEFLRHPLRFLHRREFRLVFGLYTATYASANSIETLCDATDTDNQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEKAHVKPSTSATISQLVCPAAVQFVSTPLHLVGLDLYNHKGASMSQRLVFVQREYIKSVFARIARIGPAFGIGGVGNTYCRQ 255          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: H3GH37_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH37_PHYRM)

HSP 1 Score: 216 bits (549), Expect = 3.330e-61
Identity = 114/233 (48.93%), Postives = 154/233 (66.09%), Query Frame = 2
Query:  254 ADVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFR 952
            AD AA +A+S  V+P ITI+DRAI  NASGA   G  +RE   + +  P  F  + EF +I+G+Y ATY+ AN+  T C+ +++D+  PKFI TT VN++  +AKD AF RMF  + P   P+ +  LF VRD MT  ASFN P   +K ++++  M +  A   AQLVCPA+VQLLSTP++LLG+DLYNN    +  R  F+ REY  +++ R+ R GPAFGIGGVGNT FR
Sbjct:   22 ADTAAAMAASLGVAPFITIVDRAIIENASGARPLGRGLRELSADFVRHPLRFVGKREFHLIFGLYTATYMAANVTDTACEYAEMDNQMPKFISTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDKGLMEKSGAATFAQLVCPAAVQLLSTPLHLLGLDLYNNQGHAVAKRVSFVKREYVKSVLARIGRIGPAFGIGGVGNTYFR 254          
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Match: W2KIJ3_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2KIJ3_PHYPR)

HSP 1 Score: 214 bits (546), Expect = 8.990e-61
Identity = 113/232 (48.71%), Postives = 152/232 (65.52%), Query Frame = 2
Query:  257 DVAAGLASSFLVSPSITILDRAISMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANMIMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIATYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASVQLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGIGGVGNTAFR 952
            D AA +A+S  V+P ITI+DRAI  NASGA   G  ++E   + +  P  F  + EF +I+G+Y ATYVTAN++ + C+  + D+  PKFIGTT VN++  +AKD AF RMF  + P   P+ +  LF VRD MT  ASFN P   +K ++++  M +  A   AQLVCPA+VQ +STP++LLG+DLYNN    M  R  FI REY  +++ R+ R GPAFGIGGVGN  FR
Sbjct:   23 DTAAAMAASLGVAPFITIVDRAIIENASGARPLGRGLKELSADFLKHPLRFVGKREFHLIFGLYTATYVTANVVDSVCEYGETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDKGLMEKSGASTFAQLVCPAAVQFVSTPLHLLGLDLYNNKGHAMSQRVGFIRREYVKSVLARIGRIGPAFGIGGVGNAYFR 254          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig928.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5G8_9STRA3.390e-8755.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A433PI02_9FUNG4.000e-6549.58Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A0L0FIC5_9EUKA5.140e-6549.36Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A662XCZ4_9STRA1.180e-6349.37Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WSU5_GLOUD4.610e-6348.13Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4ZUB7_PHYSP2.500e-6249.79Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8H7BJY4_9FUNG6.620e-6249.59Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8K1CT18_PYTOL1.270e-6148.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GH37_PHYRM3.330e-6148.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W2KIJ3_PHYPR8.990e-6148.71Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig928contigA-nodosum_M_contig928:223292..232882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10996T0
Model size2216
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.6e-71
EggNOG OGs28PN9@1|root,2QWAD@2759|Eukaryota,39RZR@33154|Opisthokonta
Cds size807
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig928.14.1prot_A-nodosum_M_contig928.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig928 223467..231648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.794329-UTR-A-nodosum_M_contig928:223291..2234661680870400.794329-UTR-A-nodosum_M_contig928:223291..223466Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig928 223292..223466 +
1680870400.9541507-UTR-A-nodosum_M_contig928:231648..2328821680870400.9541507-UTR-A-nodosum_M_contig928:231648..232882Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig928 231649..232882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.807935-CDS-A-nodosum_M_contig928:223466..2235201680870400.807935-CDS-A-nodosum_M_contig928:223466..223520Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 223467..223520 +
1680870400.8208773-CDS-A-nodosum_M_contig928:223920..2240601680870400.8208773-CDS-A-nodosum_M_contig928:223920..224060Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 223921..224060 +
1680870400.834479-CDS-A-nodosum_M_contig928:229805..2300041680870400.834479-CDS-A-nodosum_M_contig928:229805..230004Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 229806..230004 +
1680870400.8487175-CDS-A-nodosum_M_contig928:230818..2310041680870400.8487175-CDS-A-nodosum_M_contig928:230818..231004Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 230819..231004 +
1680870400.8596501-CDS-A-nodosum_M_contig928:231420..2316481680870400.8596501-CDS-A-nodosum_M_contig928:231420..231648Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 231421..231648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig928.14.1

>prot_A-nodosum_M_contig928.14.1 ID=prot_A-nodosum_M_contig928.14.1|Name=mRNA_A-nodosum_M_contig928.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=269bp
MAATGAMMNPKVDASQKQVSIYSLYAADVAAGLASSFLVSPSITILDRAI
SMNASGAMKTGDSIREGVKEMILRPHVFHCRPEFLMIWGVYAATYVTANM
IMTTCDRSKVDDTWPKFIGTTFVNITTVVAKDLAFTRMFATVKPRPMPIA
TYVLFTVRDGMTVAASFNMPSPASKYLQERFGMSEKNADVTAQLVCPASV
QLLSTPMNLLGMDLYNNPNGTMMARAKFIAREYNSAMVLRVARTGPAFGI
GGVGNTAFRKYFASLFTS*
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mRNA from alignment at A-nodosum_M_contig928:223292..232882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig928.14.1 ID=mRNA_A-nodosum_M_contig928.14.1|Name=mRNA_A-nodosum_M_contig928.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9591bp|location=Sequence derived from alignment at A-nodosum_M_contig928:223292..232882+ (Ascophyllum nodosum dioecious)
CTGCTAACGTCACGAATAAGCACGCACTGTGAGGAGAACTCCAACTTTAT TTAATATTTCATTTTTTGTCATAAACAGCTAAGTAGGGCGTACCACGGGT CCATCACTCCGATCCGGTTCCCTCAAACCAACAACCTCTGCTCTCTCAAG GCCAGCTCTCTCTAATAACTTTACAATGGCGGCCACTGGTGCGATGATGA ACCCGAAGGTTGATGCCTCGCAAAAACAGGTAACTCACAGCTCGCAGTGG CGTTGGCTTATCTCGTGCAACAGTTTTGTGGGGATGATGTGTAAACGGCC AACTCTCACTTTTTGCCATGACGTGAACAGTTTGGCTATTCTTTTCTTGC GGCAAGTTTTACAACGTTATGCCACGTATTACTCAACTTGTGTTCGTACT TTGGCTATATTTTCTAGTGCTCTTACGAAATAAATGCGTCGCACCTGATA CAGCATCTGGTGAGCTCAGCGTCGTATGCTGCGCGTTTAGCCGCGACCGA GAATTGATTTGTACCCCCATATGTATGATGTCTGCTCCTAATATCGGGGC AACTGTGTAAATCTTCGCCTCCAAGTTCGTGTGTCAAACCTGTTACCATG TGTTCATGACATTCTGACCTTGTTTACAGGTGTCGATCTACTCGCTCTAC GCAGCCGATGTAGCAGCTGGCCTTGCGTCGTCCTTCCTGGTGTCCCCAAG CATCACGATCCTAGACCGAGCCATTTCCATGAACGCTAGCGGAGCGATGA AGACTGGCGATTCGATCAGGTAAGGGCATTATTGGCACATACATACATAC ATGATGTTTGTTATTATGTCCGTGTATTTTCTTAACTACCATACGGCATG TATCAAGAAAAGACAACAGCTACAAACAACAAGTAGTATAACAGTAAAAT GTGTCATCCTGCTGTCCTGATGTCCTGTTGATCGAGTGAATTGGAGCTAG CATTTTTTCAACCCTCCTTACGTATCTGCGACGACATTGTTATTACTCCG TGTTGTTGGGTCGAGTAATCGAGCGTAGGCTATCATCTCCGGCGGCGGTG TGCTTCTAATAATGGTGGTGCGCTCCCTCATTAATAAGGGATCGGCGAGA AGATCAGGGTGATTTCCACAAGATTTAACAATCTCATCTAAAGCACAAGA CTACTAATAATAGCATAATGATGAGCGAGAGCCCTAGTACCAGTGGGATT GGATTGGCACCCAGCAAATATCGTAGCGACTCAAAATCAACTCCATGCAG TTGTTGTCAATCAGCTGTTGTAGTAATAATAATGCTGAGAGAGGTCTCCC GTTTTCTTGGTAGTCTAGTCAACTACTAATACAAAAAACGTAATACATTA TAGGACAGTTTTAGTATCTGTAGTAATTGTTTCTACTCCATGACATAATG GTCACTGACACACCACTGACTTCTTCTGTTGTCACTGTTGTCCCACCCCT AGCAGCCCTGTGCAACAATCACCTGTTATGTTACTGTTGTCTGTATTTCA TACGTGTAGTACGTATGTCCCGTCGTGTTGACATATACGTAATGTAATGT ATCACCTTTCTGTCTATACGAACATGTAGTACGTATGTCCCGTCGTGTTG ACGTGAAAAACCGCTCTATATCTTGTTGTACCGTCCTTGTAGTCTATATA AGGCGGAAAAACCTGAACGGAAAACTTGAAGCTGCTCCGTGATCGCAACT TTCTTGTATTTAGTATTATTAGTAAGTACTTCGTAATGAACGTAATCAGT TGCTACAGATTCTTGAGTACGGCGTTTTGGTATTTCGAGCCCAAGGAATC CTGTACAACAGGCGCGAGACGGACCGAGATCTGCGTAGCGCGTAGGCATC GCATGTAGATGCGTCACGTGATTTATGTTATTTTCCCTTTATTCGAACGA GCAGCGTAGGGGGGAGGGGGCATGCGCTGCCAGACTCTCTCTCCCTCTGT CCTCTTTTCCCTGTTAAGCAGACACGAGCGAGCGGGCTTGGCCACCGTGT AATAATGTAATAATAAAGTACCAGTAGTTTCTGGGGTTGGTAACCAATAC TACTACGCTGAATTTGAGAAACAACAACAGGTCTCTCCCAGACATTATAC TGTTGATCCAAGGTTACTACCATCGGGGGACCCATAGAAATTCTATGAAG AGATTGTGCATTTGTAGCCTATATCGACGACACTAGAAAAAAACAGAAAC ACAGCTAAAAAACCTCTCGAGCAATCACAAGGGTCAGTTGTGAACATTGG ATGTAAGGTATTATATCGTATATTATTACTACTGTACTGTACTGTACTGC ATTGTATTGTGTTGTATTGTCCTCTATAAAGTATGAACCACAACCCAATA AAACAAAATCCTTCCTTTTAAACGAAGTCTTACCCCTATAAAACTCATGT ATGATGTACTACTAACGACACCCTTCCTATCTCTTACTACTCATGCTGTC ACAAATGTAAGATATAGTAGTGTGAATTACAAACAACACCACAATCGCTA CTGGCAAGCATGTACCGTATAGTAGGTTAATTTTCCAAGATCACCTCTAG AGCTATAAATATCTATAACTTGTAGACTTCCTTCATTGACTGACGCCCAT CCGATCTTAGACCCAATGTAACAAATTGAGCTGTATCCTAGCTTATCGTG CATTTTATATTGTTGTCTTTAGGTGTCCTTGCAAGGTGATTAATTTCAAT GGACAGTAATTCTATGAAGAGGTTGTATTTTTAGCCTATGAAACAACAAA TTTTATACAACACGTAGTAGAAAGTCCCTGCGGACTTGTAAAATGTAAAT AAATATATCTCTCTTTACCAATAATACAATATTGTAACATTGCTCACGTG TTCAGTCTAGACCATAATCCCTTATTGTATAGCTCTAAGGGTCGATGGCA CTATTTCTGTATGTTATTATAAACCTATTTTATTATGTACAAAAAATGTT TTCGTTTTATTTTTGTCTGGTGCCCCTGCATGGCGATTAGTGTGAGTGTA CAGCATAATGAACGGTGAGTTTCTCACCCGGTATTATACTGTTGATCCAA TGTTACTACCATCGGGGGACCCGTTTAAATACCCTGAAGAGGTTTTGTAT TTGCAGCCTATGATCCCACCTAAACGTTTTGACATTTTTACCCCTGACTG GGGGATGCTCAGAAGGTCTAGATGCGTTCAGATTTTCCTTTAAACAATGA CGTTCCTTGTGTTCTAGACTATAAGCCCCTGTTGTTATATGGTTCGATGG CACTATTATCATCGCATATTAGTATTAATCTACTTAATTATCTACTACAC GAAGTACATTGTTTTTGTTTTGTTTTGTTTGCTGCTGTTTCTGCAAGGCT ATTAATAATGTAAGTGTACATTACAACGGTGGGCTTCTCCCCGAGCCGAC ATGATACTATTGACCAAATTCTACTACCACCATCGGGGCACCCGCTTACA TACCATAAAAAGATTTATTGGTCTTTGAAGCCTATGATCGCACCTGAACG TTTTGACATTTTCCCCCCTGACTGGGGGATGCTCAGAAGGTCCAGATGCG CTCAAATTGTTCTTTAAACAAGATTTTTGTTTACACATACCAGTTGCTTT ATAATACTACTGTCTTGTAGTAGGCTCTATACTATGTTCGTTCGTGGAGT GTGTGTGTGTGTGTTTTCTTCCCATCCATTCTGGACATCAAGTTCGTTGG ACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACGGGATTTTTAATC CACCTTCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGCGAGAAGGATTCA GCCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAAAAA GGGCGGTTCTTATGGGAACAAAATCTTGTACAAAAATCTTGATCTTACCC AAGATTTTCCCAACAAGATTTCGTTTCACTTTTTATGGGTAAAAATGTTG CCTAAAAATCTTCCCAAGATTTTCAGATGGCCGGAAATGTGCCCTCTTGA CAAAATCTTGGCCCAAGATTTTCAAATGGCAGCCTTCACGAAAATCTTAG GTCGGCGAGACACATCAGTTGTGCCGCTTCTCTCCACGGAAAATTGTAAA ATACTCTTCTAACACGCACACAGCGTGTATGGCGGTGACTGCGATGCAGC GATAGCCGAAGCTGCTGCTGCTGTGACTCATGCACAGAGCCAAAGTCAGG AGGTTGGTTCTGGCGATGAGGGGCTGGGCTTGTTATGTTTTGATTTGTCA TCAGAAGAAACGGACTTTTGGTGGCTGGAGGACGAGCAGTAGAGACTTCG CCTCTTCTCTCCTCGGAAATTGTAAAACACTCTTAACAAAAACACACACA GCATGTGTTGCGGTGACTGCGATGCAGCGATAGCCGAAGCTGCCGCCGCT GTGACTTATGTACAGAGCCAGAGTCAGGAGGTTGGTTCTGGCGATGAAGG GCTGGGCTTGTTGTGTTTTGATTTGTCATCAGCAGAAACGGACTTTTGGT GGCTGGAGAACGAGCAGTAGAGACTTGGCCTATTTTCGTGTTTCGTCTGA CATTTTACGTTCATCGAGGAAGCGGTCAAGCCCGTGTGTACCCACGACGG CGGTTGTCCTTGAGCAGCCGATCCAAAGCATTCACACTTCAAGGGAGGCA TAGACGTTTCGTTGGCGATTCCGCCTTCCATACATCGCTCCGAGGAGCTC CCCTCCTTGTTGGCGAACAACGAAGTGGTATCACCAGATTCTGCAAAAAG TACAGAATTTGATCCCACATGACTGCATACCATCGTGTACCTGGTACTGT ATATACTGTTGTACAGCAATATACTTGTTGATTACTACTGTTCACCTACT GTTGTTTTCATCTAACTTCTGGTACAAGTACAGCAGTAGGTCCCTCTATT GTTCACCGAAATAGGAAGCGCTTCCTCGTGTCACAATCAACGCGTCGAGA AGAGCTTGTTGAGaAAAAGTACCAGGTGTTTGATATAATAGGTCTTCTAA CCATTCTAGTCCAAGTGAACCTCTCTTCCCCGGTGGAGCGAGTTTAAAAG CCGTGGAGTTTTGGAGTCAGTAAACCACAACATCGGTGCGGCGTCTGCCT GTCGTTCTGCACGTGTAGTGTAAAAATGATTGGAGTAGCGCATTCTTGCC GGACTGTGCTTGTGTTCATCTACCACCGATGAGACCCAGGGTAAAACCTC ACATACGTTGGTGTCTGTGCTTCGCTGGTTGTGGTACTGTAGACTACAGC TTTGTCTGCTCTTGCAAATCTCACCCTCTTGTTAAGAAAAATACGTTGCC TATTTCCAGCCTTCGGCAATTATTTGAATTTTGTATCTCCCCCGCATAGA AGAGCATATACAAGTATGCCTGAATTATGCCCAAACATAAGATTTCCCCA TCAACAAGATTTTTTCCCCATAAGGaGCGTTACGAAATCTTCGACGTCAA GATTTTCGCACGAAAATCTTGTCGAAAAATTTAAGATTTTTGTACAAGAT TTTGTTCCCATAAGAACCGCCCTAACGAATTAATCGTTCTCCACCCGTTG GGCATTTTTATTTTGGTTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGC CGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGCCAACT GAGCTACCGGGGTCGACCGGCTGAGTGCTTACTTCTGTACCACAAGAAAA ACTATATATGTTCGTTCGTGGAGTGCTTACTGTTGTACCGTACTCTATGT AGTAACTACTACTGTACCAGGAATGTTTTATTTACTACGTGTACAGTACC TACCGTATGTTTTAGTATATTATTAGTTGTAACGTACAGCACAGCTAGAG TCTGCTGTCTGACGAGGAAGCGCGAGCGAAAACGCTGCTACAGTATATAG CTATTACAGTATTACAGTATTACAGTAGCCAACGAAAGTTAATGCACACT TTTTACAGACAGGAGTGAAAAATGGATGCATAACATTTCTCTATCACCAT CACCTGTAGTACTTGTACATATTATGCTTTGTTTGTTGTACGGTACATAC GCTCGAAAAACTTGAATGTTAGACTGTGGTTAGCTGTACCGTTGTTCCTT ACTACAGAGCTATTTCGGCGCTTACACTAAGTCTTCTTGAGCTTGACTAT AGTTCGCGCCTCAGGCACTGCTTCTGGTAATGGAAGTTGGCATTTGAACG TTTTAACAGATTTCCAATCATATTCTTAGTTAAACACATGTCTCTTGCGG TAGTCTTCGCCATACTAATAATATAATAATAGTGTACAGGCCATCAAACT ACACCACCACCAGCAAGTTCGTTATTAATAGTATAGTAGAAGACTTCAGA AATATGGGGTTCCATGTCAAGCACGTAATTATTATGTGGGTACGAACATA AATATTATCACGTACGACGTGATTTCGAAAATTATATAATAAGCGGATGT TAATTACGAAGGTATGAAAATGCTGTTTTCATTTACCCCGCGTTTTCTCG TTCGTTGTACCCAGGGAAGGAGTCAAGGAGATGATCCTCAGGCCTCACGT GTTCCACTGCCGCCCGGAGTTCCTGATGATTTGGGGCGTCTACGCGGCAA CTTACGTTACCGCCAACATGATCATGACGACTTGTGATCGAAGCAAGGTG GACGACACATGGCCGAAGTTCATCGGTACCACCTTTGTCAACATCACCAC TGTTGTCGCCAAGGTGAGCTTCCGTAACCCTGAGAAATTCCATATACAGT ACTAAAATAGAACTGAGAATCACTAATAAAATAATATACCGGTATTATTT TTCTAGTGGTTGGTGTGGCTTAGCCTTACAAGCGTGCTTCGTGGCAGTTG CTGGACAAAATTAAAATATAAAATGTTGCTGTAACCTTTTCCACCCAAAA ACGAGTCCAGAAGAATTTTCAAATCCTCACTCTCAGTGGCACGAGAAGCA TTGATCCACGCGCCCCTGTCTAGTATTATAATAGCCGATTACGATGTGAG GTATAGCTATGCTCGCCTGGGTCTACTTATCCACAAGCTATTATGTTCGC AAAGAAAGGAGCGACAGCTCTCTTCCATGTTTGCCGTCAAAATCACAGGT CGTCGCTTAGACGTCACATAGACTCAAGCCCAGCGCCTCTTTATTTTCAG TTCTTACGACTGCTTTGGACGGTGAAAAACAGAGAGGCACGAGTTCCAAA ATTTGATAAATTTCAGATAGCATTTCGACTATAGCGAGCGCCTCGTCGTT CCATAGGAGGACCGTTAGGTCGTTGTTCGGATCCTTTTGATATGCATGAA ATAGGATGTCGAGTCTTTTCGTGCGTTCCATCTCTGCTTTTAGTTTCCCT GATTGTTCCGACCATCAGATCCCAAAAGTTTGGCATGCAAACCTTTTCAC CACCCTCGTGCTTGATTGCATCAAAAACCATATTATTGCTCTAAAATCTT AATATTTTGGAGGCAGAAAATTGACGCCATATCTTCTTTCCCTTGTATTT TTGTGTGTGTTTTCCAATCGTGGCCAGGACCTCGCGTTCACGCGTATGTT CGCAACAGTCAAGCCAAGGCCGATGCCAATCGCGACCTATGTCCTGTTCA CGGTACGTGACGGTATGACCGTTGCAGCGTCGTTCAACATGCCCAGTCCG GCGTCCAAGTACTTGCAGGAGCGGTTTGGGATGTCAGAGAAGAATGCTGA CGTCACCGCCCAGGTATGCAAGGCTGCGAGATTTCAGGGCATTCAAAATT GTTGACCGGGGTTTTGACGGTCTGGCTCTGTCCTATTGGTGGAGACCAGG CAACCGAGACGACCGGAGTGCATATTGAACAGCAGGGTGCTTTGCAGAGG GTGCGATGATCATAATATTAGCCCTGTCGTCTTTGGTTGACCAGAGCACT ATTATCCCAGATGTTGACAAACTGCCCGCGGGCTTGAATTTTCTCTCAAA TCAAGTTACACTGACTCTACATTATATTATAATATCGCCCCAAGAACGTT ATTCTCCTAGGGAGGCATGTTTGACGGTAACCGTGCCGCGTGGTGTTAGA CTATGTCTTTACGATATTCCCCCCTCCTTCACCCACCGCCCCCGACCCCC CTTTCGGACGTGTGCCCACCGATACACAGCTTGTATGCCCGGCCAGCGTC CAGCTTCTTTCGACCCCTATGAATCTGCTAGGGATGGACCTGTACAACAA CCCGAACGGCACCATGATGGCCCGCGCGAAGTTCATCGCCAGGGAGTACA ACTCGGCCATGGTTTTGCGGGTCGCTCGCACCGGTCCCGCTTTCGGGATC GGAGGTGTGGGAAACACGGCGTTCCGAAAATACTTCGCCTCCTTGTTCAC CTCTTAGAGCTTTGGTTACGGCCGAGGGCGGCGCGATGCTTTGAAGGAGG AAAGCTTGGAAGGGCGTAAAGGCGTGTCAGCCTGCTGTTGTAGATGTGAC GGGGGAGGAAGCATCTGGATGGCCTGGTCTGGAGAGTTGATCACCTAGAC TAGTGAGAAAGTAGTTGTACAGATGAGGACAAATGCGAATTGCGACTTAT TTGGAAGCTTGAGTACGTCACCCTCTAGAAGATGGGAATGAATGAGATCG CCCATAAAGTGGCAACCGTGGATCTTTTTTTTTTTTTAAAGATTTTTTAC TTCACCCGATCTAAGTATTGGGTGTTGAGAGGAGAGAAGAGCAGATGGGC TAAGAGATGGGCACGCGAGCATGATTTTTGTTGTTGTTGTCAATGACTGG CTGTGTCATTACTTACGACGACGGCGCTTAAAGAAGGGCATGCTCAAGGA TAAGATGGGTGAGTGGTGGGGAGTTGATAGGAGAGCGGGAGGATGCAAGA AAGGCTCGAAGAGTAGCCAGCTTGACGCCTTTCCCCTTTGCCCAAGCGTG TAAAAAAAGGTACGAAACATCTAATATGCGTGCGATATCAGCGCGAGGCC TCTGTCTGCACCGGTATGATGAATTCTAGCGTCCTGGCGAAGCGATTAAT GAAGTCTGGAACAAGTTCGACAACCATGTTGGGGACGGAGCTAGCATTAC AAGATTACCTCGTACGTGAAGTCAAAGGCTACGTATCGTCTTTGGCACCG TAGAATTCCGTCCTCGAAAGGAACGGTTATAAAAAAACGTTGTTGTACTA TGATAATATGTGTCTTTTCTGTGATTTCGTAAATTTTGTATGTAGATATT GTTTACGATCTCGATTGCTCCGTTCTCTTTAGTCCTCCGTCGTGGGTGGT TATGTTCGTTGGGTATCCATGCAGCGAAGTTGAGGAAATGAAATCAATCG CCATCCAATTAGCAGTATTCGCACTGGAAGAGGCGTGTCCACTTGCTTGC TCAAGTGGGAATGAAAAGGGCTTCATTCGAGGTTTCTCCTCGAAACCCCT CCCAATTCTTTTATTAGTATAATTAGAGACTGTAGGGTAACGGAAGCCTA CCAGGGTATATGCCCTGCTCCATTCCCGACGGCATAATATGGCACAAGTA ATCTGAATATTTATGCCTGTGGGGGGCAAACCTTTGAGTTCCATTGGAAT GTATCGTCTTTTATTGCACCGTTTATTGGGACCCTCAAGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig928:223292..232882+

>mRNA_A-nodosum_M_contig928.14.1 ID=mRNA_A-nodosum_M_contig928.14.1|Name=mRNA_A-nodosum_M_contig928.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=807bp|location=Sequence derived from alignment at A-nodosum_M_contig928:223292..232882+ (Ascophyllum nodosum dioecious)
ATGGCGGCCACTGGTGCGATGATGAACCCGAAGGTTGATGCCTCGCAAAA
ACAGGTGTCGATCTACTCGCTCTACGCAGCCGATGTAGCAGCTGGCCTTG
CGTCGTCCTTCCTGGTGTCCCCAAGCATCACGATCCTAGACCGAGCCATT
TCCATGAACGCTAGCGGAGCGATGAAGACTGGCGATTCGATCAGGGAAGG
AGTCAAGGAGATGATCCTCAGGCCTCACGTGTTCCACTGCCGCCCGGAGT
TCCTGATGATTTGGGGCGTCTACGCGGCAACTTACGTTACCGCCAACATG
ATCATGACGACTTGTGATCGAAGCAAGGTGGACGACACATGGCCGAAGTT
CATCGGTACCACCTTTGTCAACATCACCACTGTTGTCGCCAAGGACCTCG
CGTTCACGCGTATGTTCGCAACAGTCAAGCCAAGGCCGATGCCAATCGCG
ACCTATGTCCTGTTCACGGTACGTGACGGTATGACCGTTGCAGCGTCGTT
CAACATGCCCAGTCCGGCGTCCAAGTACTTGCAGGAGCGGTTTGGGATGT
CAGAGAAGAATGCTGACGTCACCGCCCAGCTTGTATGCCCGGCCAGCGTC
CAGCTTCTTTCGACCCCTATGAATCTGCTAGGGATGGACCTGTACAACAA
CCCGAACGGCACCATGATGGCCCGCGCGAAGTTCATCGCCAGGGAGTACA
ACTCGGCCATGGTTTTGCGGGTCGCTCGCACCGGTCCCGCTTTCGGGATC
GGAGGTGTGGGAAACACGGCGTTCCGAAAATACTTCGCCTCCTTGTTCAC
CTCTTAG
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