mRNA_A-nodosum_M_contig9275.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9275.1.1
Unique NamemRNA_A-nodosum_M_contig9275.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9275contigA-nodosum_M_contig9275:4420..6132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.1314306-CDS-A-nodosum_M_contig9275:4419..45121680870400.1314306-CDS-A-nodosum_M_contig9275:4419..4512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 4420..4512 -
1680870400.2251568-CDS-A-nodosum_M_contig9275:5485..58061680870400.2251568-CDS-A-nodosum_M_contig9275:5485..5806Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 5486..5806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.235605-UTR-A-nodosum_M_contig9275:5806..61321680870400.235605-UTR-A-nodosum_M_contig9275:5806..6132Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 5807..6132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9275.1.1prot_A-nodosum_M_contig9275.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9275 4420..5806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9275.1.1

>prot_A-nodosum_M_contig9275.1.1 ID=prot_A-nodosum_M_contig9275.1.1|Name=mRNA_A-nodosum_M_contig9275.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=138bp
MELTISRWDGNGREIKRSGNKSGNRSGNKSGNKLGTSRETRRETRLHVGR
HRNRFVTFITTAVFYVPCMYDSGIQGHTNGSTRTCTSSKNSIMATNVTAC
VQIYCYVWYETPYYVFLKNNFQWFVRERANKITRDHS*
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mRNA from alignment at A-nodosum_M_contig9275:4420..6132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9275.1.1 ID=mRNA_A-nodosum_M_contig9275.1.1|Name=mRNA_A-nodosum_M_contig9275.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:4420..6132- (Ascophyllum nodosum dioecious)
ACCCTTGAACAAAGGCAGGGAGAGATAGAGGGAGAGAAAGAGAGGCAAGA
GCAGGAGTAGAACTACTGGTACATACTACACATGCGAAGTCTATATCTGT
GCTGAGGCAGTAGGGAATAAATGCCGTTTGTACAGACACTTGCTTGGTTG
TAGCTGCAAAAAAATCAGGGCTCCGCGCGGTAACTTGGTACGGGAACGTT
TAGCCCACCGCAGGCGAAAAAAAAAAGGGTCTTCCCGAGCAACGGTACGG
GAAAACGTTCCCGTTTGTGTACCACGGGATAGGAACGGGACGGGAAGGCG
GGAAGGCAGAAGGTTGACGGGATGGGATGGAACTAACTATTTCCCGGTGG
GACGGGAACGGTCGGGAAATTAAACGGTCGGGAAACAAGTCGGGAAACAG
GTCGGGAAACAAGTCGGGAAACAAGTTGGGAACAAGTCGGGAAACACGTC
GGGAAACACGTCTGCATGTCGGGAGGCACAGAAATCGTTTCGTGACTTTC
ATCACAACTGCTGTTTTTTATGTACCTTGTATGTATGACTCAGGAATCCA
AGGTCACACCAACGGCAGTACACGTACGTGTACATCCAGCAAGAACAGTA
TAATGGCAACCAATGTTACGGCATGTGTACAGATATATTGTTATGTACTG
GTTGCTGGTTTCGGGGAATGAGTGTGGGAGGGTCTTTCCGGCGGGTGTAG
GGCCGGGCTCACCCTCAAGAGATGCAGCCAACTGGCTGCCTTCGCGATTC
AGCCTGTCGGTTGAGACGCGGCGGCGGTATGGTTGGCTGAGGATGATGGT
GTTCCCAGGTGCGCGCCTCTTCCCGAGCCCCAATTTGGTGCCCTTCGGGG
GGGTGGCGGCACGCGAGAGGGGAGCACTGTCGCGGAGAGCCTGGTAGTAC
TCTACTATCGGGTGGGTACGCACCAGATTCGGCGAAGGCGGAGGGCAGCT
CGATCGTTGACGAGCCAGGGGAGGCTGAACCCCTGTGCGCGAGAATCACA
GGCTTGAACCGGGAGGTTTCTGAGGGAAAAGCTGATCTCTGACCACGGTC
ATTTTTCTTCCTACGAGGGCCACAAGGAGCGGCGAACGGGCAAGATTCGT
GGGGCTTTTTCAAGAATGCACAGGGCTTTGGACGGCTGGATGCTGGCTCG
CGCGCCGGCTTCACCAGTTCAAGGCCTCCACCACCATGGACCTCGGTATT
TCGATTTTCCTTATTTCTGTACAAAATGTGTGGCCTTGAGAAACTTGGAC
TTGTTGACCAAAACTGGTTGGAGCGTAATTTTTCCGGTTTTTGCTGAGAA
CGCTGGTCGTGGGTAGGCGACAACATTCCGAGTCGATCGAGGTTGCTCTC
GAATGGAGTAAGGAGGTTTGATGAACCGTTTTGATATTGGTCGGTGCCAT
TGCTTGTAGAGCCGCATAACTTTTTGTCGCGATTTGGATCCCTGTTGGTC
TGAGTAGCGGGTTGTCACCATGATGTGACCCGTTGACCTTCGTACTCTTT
GTGACCACAAGCGGGATTGGCGTTTGATAGGTCTATGGCCCCGACTTGTT
GTGTCACCGTAGTTTTTTCAGTTGCAAGGACAATACGCTGAATGTGTGAA
TCAACAACAACAACAACAACTGGTACGAGACTCCATATTATGTATTTTTG
AAGAATAATTTCCAGTGGTTCGTTCGTGAGAGGGCAAACAAAATAACGCG
GGACCATAGCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9275:4420..6132-

>mRNA_A-nodosum_M_contig9275.1.1 ID=mRNA_A-nodosum_M_contig9275.1.1|Name=mRNA_A-nodosum_M_contig9275.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:4420..6132- (Ascophyllum nodosum dioecious)
ATGGAACTAACTATTTCCCGGTGGGACGGGAACGGTCGGGAAATTAAACG
GTCGGGAAACAAGTCGGGAAACAGGTCGGGAAACAAGTCGGGAAACAAGT
TGGGAACAAGTCGGGAAACACGTCGGGAAACACGTCTGCATGTCGGGAGG
CACAGAAATCGTTTCGTGACTTTCATCACAACTGCTGTTTTTTATGTACC
TTGTATGTATGACTCAGGAATCCAAGGTCACACCAACGGCAGTACACGTA
CGTGTACATCCAGCAAGAACAGTATAATGGCAACCAATGTTACGGCATGT
GTACAGATATATTGTTATGTATGGTACGAGACTCCATATTATGTATTTTT
GAAGAATAATTTCCAGTGGTTCGTTCGTGAGAGGGCAAACAAAATAACGC
GGGACCATAGCTAA
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