mRNA_A-nodosum_M_contig9271.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9271.2.1
Unique NamemRNA_A-nodosum_M_contig9271.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9271.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9271contigA-nodosum_M_contig9271:17434..20069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1534
Hectar predicted targeting categoryother localisation
Exons2
Cds size792
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.0681288-CDS-A-nodosum_M_contig9271:17433..182251680870400.0681288-CDS-A-nodosum_M_contig9271:17433..18225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9271 17434..18225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.082111-UTR-A-nodosum_M_contig9271:18225..186731680870400.082111-UTR-A-nodosum_M_contig9271:18225..18673Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9271 18226..18673 +
1680870400.0925586-UTR-A-nodosum_M_contig9271:19775..200691680870400.0925586-UTR-A-nodosum_M_contig9271:19775..20069Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9271 19776..20069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9271.2.1prot_A-nodosum_M_contig9271.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9271 17434..18225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9271.2.1

>prot_A-nodosum_M_contig9271.2.1 ID=prot_A-nodosum_M_contig9271.2.1|Name=mRNA_A-nodosum_M_contig9271.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp
FGTPLPLNRWPPWNGRPLTRWRKASSTRKCLTILPRGPPLTKQRLTGNGR
TQTVAAPLRAQLATLDRHYTTECHGLQDSATAIKEMTRTHMEREARVASF
KAQKQSTAATLARAERIQASFLAGFSAQQPAPPLSAVCAASAAQPPRARA
HLTTSVASAARQSPASANLATLVAPLSHSLWLWAPPRFQRLPPRRVRSVP
QLLPQPGLWYPLPTHLRRGTPCNRRLPGNSATLRAPHPGRSWSRGHIANP
NRHHTPQRGMLVT*
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mRNA from alignment at A-nodosum_M_contig9271:17434..20069+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9271.2.1 ID=mRNA_A-nodosum_M_contig9271.2.1|Name=mRNA_A-nodosum_M_contig9271.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2636bp|location=Sequence derived from alignment at A-nodosum_M_contig9271:17434..20069+ (Ascophyllum nodosum dioecious)
TTTGGGACACCCTTACCCCTCAACAGATGGCCGCCATGGAACGGGCGTCC
CTTAACGAGGTGGAGAAAGGCCTCGTCCACGCGCAAGTGTCTGACGATCC
TCCCGCGAGGGCCGCCTCTGACCAAACAGCGTTTGACTGGGAACGGCCGA
ACACAAACCGTCGCAGCTCCTCTTCGTGCGCAACTCGCCACGCTTGACCG
TCACTACACCACCGAGTGCCATGGGCTCCAAGACTCCGCCACGGCCATCA
AAGAAATGACACGGACCCACATGGAGCGTGAGGCACGCGTTGCTTCTTTC
AAAGCCCAAAAACAATCCACGGCCGCAACCCTCGCGAGGGCCGAGCGTAT
CCAAGCCTCCTTCCTCGCCGGGTTCTCTGCCCAACAGCCGGCTCCGCCCC
TTTCCGCGGTTTGTGCCGCTTCTGCCGCACAGCCGCCTCGGGCTCGGGCC
CACCTTACGACTTCTGTCGCCTCCGCTGCTCGGCAGTCTCCGGCTTCGGC
CAACCTTGCGACTTTGGTTGCCCCCCTGTCCCACAGCCTATGGCTCTGGG
CGCCTCCACGGTTCCAACGGTTACCGCCGCGCCGCGTCCGCTCGGTTCCA
CAGCTCCTGCCCCAACCAGGCCTCTGGTACCCCCTGCCGACGCACTTGCG
ACGCGGCACACCATGCAACCGCCGACTCCCCGGGAATTCCGCGACGCTCC
GAGCTCCACACCCTGGTCGGTCGTGGTCTCGCGGCCACATCGCCAACCCC
AACCGCCACCACACCCCACAACGCGGAATGCTCGTTACCTAGAGCTACCG
GTCTCCAAATTTGTGTTCCGCAACAAGGCTTTTCCGTCCGCCCTTCGGGT
CCCCATCAAGGACCACGCAACGGAGGTCCATGAAATCCTATGGGAGCTTA
CCAGGATTCGCTACTGCCTAAACGGCGCGCTGGACCTCGCGACGCAGGAT
CGTATCCCCTTAGGCGAACGAGTCGTGAACGCGACCCTCCGCCTCCGTGA
CCTCCTGGAAGCGGCGTGCAAAACTACCGACGGCGCACAATGGCTCAGCG
ACATACTCCGCAAAATCAAGACGGACCGCGCCAATCGGACGGAGTCTTCC
GCTAGCGACTCCTCCACCACCACCGGTCAGCGTCGCCGTGAAGAACCCTC
CAGCGGCCGAGGGAACTCGAAACGGGCCACCTTCTCTGGCTCGGATAGCA
ACTCCGGCCCGCACCCCCGAAGGACTGAACGAGATCGACGGCAAGTACCC
CCTGTTATATTTATGCTGCGGAACTTAAAAGTGACACACCATCGTTTCCG
CCACGAATATTTAGGCCCCGTGCAACGCAACGCCTGCCCTCGCGCGCCCC
TATCTCTAGTACGGTAAATGCCTCTAACGCCGACCCCCCCCCCCCCTCCT
TGAACCAGATGATCGAGGCGGTCACGGCCGCGGCAATAGCCACCGTTGAC
CGCCACCTTGCGCATATGGGCTTATGTCCCGCGCCCATAGTACCGCACAC
GGGTTCTGTGGCTCCCACCACTTACCCCACAGCGGGCCCGCCGAATACTG
TACCCCCTTTTGCACGCACCGCGCCTGTAGCACAGTACACGGGTCCTGTG
GCTCCCACCACTTGCCCCACAGCAGTCCCGCCGAATACTGTACCCCCTTT
TGCACGCACCGCGCCTGTAGCACAGTACACGGGTCCTGTGGCTCCCACCA
CTTACCCCGCGGCGATCTCGCCGGATACTTAACCCCCTTTCATGATCTCC
TTGTCTGTAGCACCACCCCCACCGTCGGTAGGTACTGTAAACCTATACAT
TTACCCGTCCGTGGCCCCCGCGCCAGTGTCGACGCTCCCGCCCGCAGACC
CCGTGGTCTCCATCGCGCGCCCCCCTCCAGCCCCTACGAGAACCCCCCCC
CCACATGCGACCTCGTTCGCCCCCGTTTTGAACGGCCCCTCGACACCGCC
CCCCCCTGATTAGCGCATTTTAAACGACGATAGCTCGTCCCTCACCTCGA
ACTCATCGAGCTCTTTTGGCCTTCGAGCAGACTTCGTCGCGAGCTTACAG
GCCGCGTACCGTACATTAGATATGCGCCGCGTTCCACGCGTTCAACTTAC
AATTCCCTCCCTCCGCAGATAGAACTGCTGCAACCCAATTGTTGATTCGC
TCCATACGGGACGCACTCTCTGGAGTTTTTGACGTCGCCGACCCGACGGG
GACGGTGACTCTGACCTCACCCGTTTGGGTCCCCGGATGGCACGCGCCCC
TACTGAAATTGACGAAAGCCGCTATATTCGCCAATCGTGATGATACCCAC
GACTTGCACCGACTTATTGACGATCTCTTTTCCCAACTTCAGGAAAGGTT
GACTTCAGGCTCTAGCGGTCCGGACGCTTTCAGGACTCTCCTGGCCGATT
TCGCTGACTACTTCGATCGCGCGCCGCGTGGAGCTGCCCTGACGACCCTC
CAGAATTTCGGCATTCGCACCGGAACGCCTTTTGCGAGCTACCTGCGAGC
TCTACGGGTGGTCGTAGCCAGTACTGTAGAGAAAGGCGGACCCTTGGCAC
CATCCGCGGCAATGGCCATATAATTAGTTAGGATTTGAACGGCACAACAG
TACCCCATGTTGATGCCGACCCTGTTCCCGGGTGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9271:17434..20069+

>mRNA_A-nodosum_M_contig9271.2.1 ID=mRNA_A-nodosum_M_contig9271.2.1|Name=mRNA_A-nodosum_M_contig9271.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig9271:17434..20069+ (Ascophyllum nodosum dioecious)
TTTGGGACACCCTTACCCCTCAACAGATGGCCGCCATGGAACGGGCGTCC
CTTAACGAGGTGGAGAAAGGCCTCGTCCACGCGCAAGTGTCTGACGATCC
TCCCGCGAGGGCCGCCTCTGACCAAACAGCGTTTGACTGGGAACGGCCGA
ACACAAACCGTCGCAGCTCCTCTTCGTGCGCAACTCGCCACGCTTGACCG
TCACTACACCACCGAGTGCCATGGGCTCCAAGACTCCGCCACGGCCATCA
AAGAAATGACACGGACCCACATGGAGCGTGAGGCACGCGTTGCTTCTTTC
AAAGCCCAAAAACAATCCACGGCCGCAACCCTCGCGAGGGCCGAGCGTAT
CCAAGCCTCCTTCCTCGCCGGGTTCTCTGCCCAACAGCCGGCTCCGCCCC
TTTCCGCGGTTTGTGCCGCTTCTGCCGCACAGCCGCCTCGGGCTCGGGCC
CACCTTACGACTTCTGTCGCCTCCGCTGCTCGGCAGTCTCCGGCTTCGGC
CAACCTTGCGACTTTGGTTGCCCCCCTGTCCCACAGCCTATGGCTCTGGG
CGCCTCCACGGTTCCAACGGTTACCGCCGCGCCGCGTCCGCTCGGTTCCA
CAGCTCCTGCCCCAACCAGGCCTCTGGTACCCCCTGCCGACGCACTTGCG
ACGCGGCACACCATGCAACCGCCGACTCCCCGGGAATTCCGCGACGCTCC
GAGCTCCACACCCTGGTCGGTCGTGGTCTCGCGGCCACATCGCCAACCCC
AACCGCCACCACACCCCACAACGCGGAATGCTCGTTACCTAG
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