mRNA_A-nodosum_M_contig9245.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9245.2.1
Unique NamemRNA_A-nodosum_M_contig9245.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9245.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9245contigA-nodosum_M_contig9245:9636..11583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons4
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9245.2.1prot_A-nodosum_M_contig9245.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9245 9737..11384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.08887-UTR-A-nodosum_M_contig9245:9635..97361680870396.08887-UTR-A-nodosum_M_contig9245:9635..9736Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9245 9636..9736 -
1680870396.1443408-UTR-A-nodosum_M_contig9245:11384..115831680870396.1443408-UTR-A-nodosum_M_contig9245:11384..11583Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9245 11385..11583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870396.1012735-CDS-A-nodosum_M_contig9245:9736..98161680870396.1012735-CDS-A-nodosum_M_contig9245:9736..9816Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9245 9737..9816 -
1680870396.1109617-CDS-A-nodosum_M_contig9245:10282..104651680870396.1109617-CDS-A-nodosum_M_contig9245:10282..10465Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9245 10283..10465 -
1680870396.1206508-CDS-A-nodosum_M_contig9245:10781..110311680870396.1206508-CDS-A-nodosum_M_contig9245:10781..11031Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9245 10782..11031 -
1680870396.133661-CDS-A-nodosum_M_contig9245:11267..113841680870396.133661-CDS-A-nodosum_M_contig9245:11267..11384Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9245 11268..11384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9245.2.1

>prot_A-nodosum_M_contig9245.2.1 ID=prot_A-nodosum_M_contig9245.2.1|Name=mRNA_A-nodosum_M_contig9245.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=210bp
MVAALVWAVQRADKIAGLAAAIETARVAGAFSELEETCQIHVAGLISYVG
VLNDCWEGGSTPDPVALAIGVIKTLLGSAAEGDRERKGEGEGENWLSLMG
HRRCGARAGRVVCRRRVGTRRAVHAAHFRRVRRPASRCRPGGPFEAGGSW
ARPRRPPTRRGPRVVVGYSERVLRGGDGHEEDGGLDGLVPSRRERARRRS
RHRRKAFFS*
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mRNA from alignment at A-nodosum_M_contig9245:9636..11583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9245.2.1 ID=mRNA_A-nodosum_M_contig9245.2.1|Name=mRNA_A-nodosum_M_contig9245.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1948bp|location=Sequence derived from alignment at A-nodosum_M_contig9245:9636..11583- (Ascophyllum nodosum dioecious)
CGCTAGTAATAACGGTACGACATGTTGTCATTTACCGGATCCCATAATAT
GATACCCATCGCGTGTCGCTCGGCAGTCGCTTAAGGGCGCGTCGAGGCTG
TGGACCTCGAGGAACCCGGCGATCACCGCCGTTCGGCCATGGTTTGAAGG
GTTCTTGGTAGGCATCTCGCCCGATGGCAATTGTTTTGGCACGGCCTGGA
TGGTCGCCGCGTTGGTGTGGGCAGTCCAGCGCGCTGATAAAATTGCCGGG
TTGGCGGCGGCCATCGAGACTGCCCGGGTAGCCGGAGCCTTCAGCGAGCT
GGAGGAGACATGCCAGGTAGAGGGCAACGGCATGAGCGTTATACATGTTT
TTTTTCTCGAGGTAGTATGGTATGAAGTACTCCGTAACACTCGATATGCA
TGGTATAAGTACTAGTAATATTAAGTAACACTGTATAATCGAGACTTTTG
ACATTCTAGTTATTATAGTGCCTGCAGAAAGACGACGATAGCGTTGGTAG
GGGTACAGCAGTAACGACCCTCCCGTGACGCTCACCTTGTCGTCTGTCGC
AGATCCATGTCGCCGGATTGATCAGCTACGTTGGCGTGCTCAACGACTGT
TGGGAAGGAGGCTCCACGCCCGACCCCGTGGCTCTTGCTATTGGGGTTAT
TAAGACCCTGCTCGGTTCCGCCGCCGAGGGAGACAGAGAGAGAAAGGGAG
AGGGTGAGGGAGAGAACTGGCTCTCCCTCATGGGGCATCGCCGTTGTGGC
GCGCGCGCTGGACGTGTGGTGTGTCGGCGACGGGTGGGAACGCGACGAGC
TGGTGAGTGAGTGAAGGTGTAGAACCTTAATCCAAACCCTTAACCTTAAC
ACGACTGCAGTATTAATACTTTGCCGCGGTCTTCCTGGCCTTGACGTCAC
GATACGAGCGCAGTATCAATAAATAATATATTCCATTCCGCGGTGTTCCT
GGCCTTGATGTCGCATATTATTTTGAAGTATCGTAGGTGGGTGAGGTACT
CCACTCTCCACTCTACTATTATAGGACCATTCCGTACTATAATAGTAATA
GTAATAGTAATAGTAATAGTAACTGACTGCTGCCATCCCTTTTGAACTCC
TCCTCCCCGTCGACGCAGTGCACGCTGCGCACTTTCGGCGAGTCCGTCGA
CCCGCTAGTCGGTGTCGACCCGGTGGCCCTTTCGAGGCCGGGGGGAGCTG
GGCGCGACCACGGAGGCCTCCAACCAGGAGGGGGCCTCGGGTTGTTGTTG
GGTACTCTGAGCGAGTACTTCGTGGTGGGGACGGGCACGAGGAAGACGGA
GGTGTGTGCCACGCTCCCCTGCTGTCCGGAGTAGCTAAAAGTATCCAATT
AGCCAAACTGTACCTGTGGTACTATTAGCTCTAATAGGTAACCAAGCGAG
AGTCAGGTCTGGAATCGCGAGTGGTCACGGTTGCATCGCGGAGTGCGGGA
AGGAGCTGAGGTTGCACAGAGCACGGCGCGGCTACACCTGAGTCGCCCGA
TGCCCGACGCCGCAAATGTACTCTCGCGTACTCTGGTTGCTCTTAGCAGC
TCCTCGTAGTCGTAGAGCCAACACGTTTGATAACGGCTTGGGTATGGCAA
CACCTCAGGGTTCGTTCGGGTCGCAAGTGTACAATGCACGCGGCGTTATG
TGAGGTATGTGGCGCACATTCTCGAGCTATTAGCGCCACCGGCCTTGTTC
GCTTTTTTTTTTTCAAGGAGGTTCATTTCCCTTCATGGCGTGCCGCGGAT
GTCCTTCGCCCTCGCAGGACTTGACGGACTTGTTCCGTCAAGACGCGAAC
GCGCACGGCGGCGAAGTCGTCACAGGCGTAAAGCTTTTTTTTCGTAGTGC
AGCGCACCACTACGACGTCCTCGTGGAAGCGGGGACGGCGTTGGAGGTGG
AACTCCGAAAGGAGTTTGGGCTTCAGTTGAAGCCCTTCGACATCGCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9245:9636..11583-

>mRNA_A-nodosum_M_contig9245.2.1 ID=mRNA_A-nodosum_M_contig9245.2.1|Name=mRNA_A-nodosum_M_contig9245.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig9245:9636..11583- (Ascophyllum nodosum dioecious)
ATGGTCGCCGCGTTGGTGTGGGCAGTCCAGCGCGCTGATAAAATTGCCGG
GTTGGCGGCGGCCATCGAGACTGCCCGGGTAGCCGGAGCCTTCAGCGAGC
TGGAGGAGACATGCCAGATCCATGTCGCCGGATTGATCAGCTACGTTGGC
GTGCTCAACGACTGTTGGGAAGGAGGCTCCACGCCCGACCCCGTGGCTCT
TGCTATTGGGGTTATTAAGACCCTGCTCGGTTCCGCCGCCGAGGGAGACA
GAGAGAGAAAGGGAGAGGGTGAGGGAGAGAACTGGCTCTCCCTCATGGGG
CATCGCCGTTGTGGCGCGCGCGCTGGACGTGTGGTGTGTCGGCGACGGGT
GGGAACGCGACGAGCTGTGCACGCTGCGCACTTTCGGCGAGTCCGTCGAC
CCGCTAGTCGGTGTCGACCCGGTGGCCCTTTCGAGGCCGGGGGGAGCTGG
GCGCGACCACGGAGGCCTCCAACCAGGAGGGGGCCTCGGGTTGTTGTTGG
GTACTCTGAGCGAGTACTTCGTGGTGGGGACGGGCACGAGGAAGACGGAG
GACTTGACGGACTTGTTCCGTCAAGACGCGAACGCGCACGGCGGCGAAGT
CGTCACAGGCGTAAAGCTTTTTTTTCGTAG
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