mRNA_A-nodosum_M_contig9241.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9241.2.1
Unique NamemRNA_A-nodosum_M_contig9241.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9241.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9241contigA-nodosum_M_contig9241:11021..11244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870395.9434016-CDS-A-nodosum_M_contig9241:11020..110981680870395.9434016-CDS-A-nodosum_M_contig9241:11020..11098Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9241 11021..11098 -
1680870395.9572985-CDS-A-nodosum_M_contig9241:11164..112151680870395.9572985-CDS-A-nodosum_M_contig9241:11164..11215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9241 11165..11215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870395.968936-UTR-A-nodosum_M_contig9241:11215..112441680870395.968936-UTR-A-nodosum_M_contig9241:11215..11244Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9241 11216..11244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9241.2.1prot_A-nodosum_M_contig9241.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9241 11021..11215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9241.2.1

>prot_A-nodosum_M_contig9241.2.1 ID=prot_A-nodosum_M_contig9241.2.1|Name=mRNA_A-nodosum_M_contig9241.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=43bp
MFCWRCTCEMTASGAAAESFELSRDGVMLEGLFVLFRALFPV*
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mRNA from alignment at A-nodosum_M_contig9241:11021..11244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9241.2.1 ID=mRNA_A-nodosum_M_contig9241.2.1|Name=mRNA_A-nodosum_M_contig9241.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=224bp|location=Sequence derived from alignment at A-nodosum_M_contig9241:11021..11244- (Ascophyllum nodosum dioecious)
CTTCCTTGGGCTTTGTTACCTCTGGTGGTATGTTTTGTTGGCGCTGCACT
TGTGAAATGACCGCATCTGGTGCTGCCGCGCTTGTCCGACACATTTTGAC
ACATTTTGCTGTGGTGAGGTGGGAGGTAGAGACGTTGCTACGGAGCGAGA
GTTTTGAGTTATCTAGGGATGGTGTCATGTTGGAAGGGTTGTTTGTCCTC
TTCCGCGCTTTGTTTCCGGTATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9241:11021..11244-

>mRNA_A-nodosum_M_contig9241.2.1 ID=mRNA_A-nodosum_M_contig9241.2.1|Name=mRNA_A-nodosum_M_contig9241.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=129bp|location=Sequence derived from alignment at A-nodosum_M_contig9241:11021..11244- (Ascophyllum nodosum dioecious)
ATGTTTTGTTGGCGCTGCACTTGTGAAATGACCGCATCTGGTGCTGCCGC
GGAGAGTTTTGAGTTATCTAGGGATGGTGTCATGTTGGAAGGGTTGTTTG
TCCTCTTCCGCGCTTTGTTTCCGGTATAG
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