mRNA_A-nodosum_M_contig922.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig922.12.1
Unique NamemRNA_A-nodosum_M_contig922.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 3.630e-27
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:  775 DSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDALKDTAAPEELYRKMRTRGHW 1056
            +S+YW + +R     DLGH+CRECKRP   + ETIA+RRGGRIE++YH+ACFS  +DPR+Q  +S   GK+V  +  T AP   Y+KMRT  HW
Sbjct:   28 ESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A8J5X274_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X274_DIALT)

HSP 1 Score: 113 bits (283), Expect = 1.090e-26
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  769 GDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDA-LKDTAAPEELYRKMRTRGHW 1056
            G+D+RYWD+AFR+  + DLGH CREC++PF  L E +A RRG R+ L+YH+ CFS +ADPRSQP    N GK+  +     AAP E + KMRT  H+
Sbjct:    4 GNDTRYWDFAFRAVEKSDLGHVCRECRQPFARLGEPLAERRGARLALRYHRDCFSGLADPRSQPRGPFNEGKWAGSHAVSAAAPAEPFHKMRTAAHF 100
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A8J1Z4U7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z4U7_9DINO)

HSP 1 Score: 103 bits (256), Expect = 2.850e-21
Identity = 57/121 (47.11%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  706 SAPPTAAPTVPSSSSPAF----FGNGDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDALKDTAAPEELYRKMRTRGHW 1056
            SA P+  P++  + S A      G GD++ YWDY  R T R DLGH CREC++PF  + E I  RRG RI  +YH ACFS  ADPRSQ  SS + G  V    + AAP   + KMRT  H+
Sbjct:   50 SAAPSLHPSLAGAQSVACSEVTIGAGDETLYWDYQHRLTLRSDLGHKCRECRKPFSKIGEPITERRGSRIACRYHAACFSGYADPRSQARSSTHEGNLVGTQFE-AAPGTPFSKMRTDTHF 169
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 104 bits (259), Expect = 8.300e-21
Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 1 
Query:  652 AIATTTNYRPWLKGRRNASAPPTAAPTVPSSS-------SPAFFGNGDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDALKDTAAPEELYRKMRTRGHW 1056
            A   TT    W       SA P+  P+V +S        S    G GD++ YWDY  R   R DLGH CREC++PF  + E I  RRG RI  +YH  CFS  ADPRSQ  SS + G+      + AAP+  + KMRT+ H+
Sbjct:  127 ASVATTRRSTW-------SAAPSLHPSVAASGKAFSLACSETTIGAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPITERRGSRISTRYHAECFSGYADPRSQARSSTHEGRLAGTQFE-AAPDGPFSKMRTQSHF 260
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 96.7 bits (239), Expect = 1.320e-20
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  784 YWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDALKDTAAPEELYRKMRTRGHW 1056
            YW    RS    D+GH C+ECKRPF  + E + VRRGGRIEL+YH+ C+S  ADPR+Q +SS N  +   AL   AAP   +RKMRT  H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALS-AAAPALPFRKMRTSSHF 107
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BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 83.2 bits (204), Expect = 6.560e-14
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:  610 QDDGHRRSGSLGSPAIATTTNYRPWLKGRRNASAPPTAAPTVPSSSSPAFFGNGDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPTSSANVGKFVDALKDTAAPE 1020
            +D   + +G+ G   +   +   P    R+ A     A    PS   P       D  YW +  R     DLGH CRECK+P   L + IA RRG R++++YH+ACFS   DPRSQ   SA + K+  A +D+  P+
Sbjct:   15 EDTDEKVAGANGHHVVDEASEVGPVRTARKKA-----APVRKPSGQRPVHVAKYGDEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERRGARVQMRYHRACFSDDGDPRSQ--DSAKLSKWY-ARRDSGQPK 143
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig922.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA3.630e-2753.19Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J5X274_DIALT1.090e-2652.58Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J1Z4U7_9DINO2.850e-2147.11Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J2F2Y4_9DINO8.300e-2141.55Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1LEE0_NEODS1.320e-2051.65Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A3P3YIB7_PLABS6.560e-1435.04Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig922contigA-nodosum_M_contig922:115875..117699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_126617
Model size1409
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.93e-25
EggNOG OGs2E6M4@1|root,2SDAD@2759|Eukaryota
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870391.4942918-UTR-A-nodosum_M_contig922:115874..1161981680870391.4942918-UTR-A-nodosum_M_contig922:115874..116198Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig922 115875..116198 +
1680870391.6639786-UTR-A-nodosum_M_contig922:117349..1176991680870391.6639786-UTR-A-nodosum_M_contig922:117349..117699Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig922 117350..117699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870391.6427789-CDS-A-nodosum_M_contig922:116198..1167641680870391.6427789-CDS-A-nodosum_M_contig922:116198..116764Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 116199..116764 +
1680870391.6536436-CDS-A-nodosum_M_contig922:117180..1173491680870391.6536436-CDS-A-nodosum_M_contig922:117180..117349Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig922 117181..117349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig922.12.1prot_A-nodosum_M_contig922.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig922 116199..117349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig922.12.1

>prot_A-nodosum_M_contig922.12.1 ID=prot_A-nodosum_M_contig922.12.1|Name=mRNA_A-nodosum_M_contig922.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=245bp
MDEKQRHPDVNTPSTDIVRRNKWISSLTESSRPGQFPHEDRGHDAKEDFQ
GVHHENSRGARGERQRGDECSLAIIRARRRSQHFPELSRRRETTWQDDGH
RRSGSLGSPAIATTTNYRPWLKGRRNASAPPTAAPTVPSSSSPAFFGNGD
DSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQA
CFSMVADPRSQPTSSANVGKFVDALKDTAAPEELYRKMRTRGHW*
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mRNA from alignment at A-nodosum_M_contig922:115875..117699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig922.12.1 ID=mRNA_A-nodosum_M_contig922.12.1|Name=mRNA_A-nodosum_M_contig922.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1825bp|location=Sequence derived from alignment at A-nodosum_M_contig922:115875..117699+ (Ascophyllum nodosum dioecious)
GGGATGCTCTGAAGGTCTGATTTTTCTTTAAAAAAGTAGCAGTATCTCGT
ACACCAATCATGCAATACCATACGAGTACGTACATACGTCGGTAGGAGCA
GCGAAGATACAAGCACAGAGTCAACAGTAATACTCGTGTAGAGCTAGTAC
TGTAGTACACAAGTAGTACAGTACTTGTAGTGCGCTTATCAGGGTGCGGA
TCTGTTACCGGCGAGTCTAGACCGTCGGACGTTGCCTCCAACGTTTCGTG
TTTTCCGCTACAATCGACGCCGGCGCTACGGGTCCGCAGAACAATTTGAA
CGACGGTGGTCTGATGCGTTGAGAATGGATGAGAAGCAACGACATCCTGA
CGTCAACACCCCGAGTACCGACATCGTCCGGCGAAACAAGTGGATTAGCT
CGCTTACTGAAAGTTCCCGACCAGGTCAATTCCCACACGAAGATCGCGGA
CATGATGCGAAGGAAGATTTCCAGGGCGTGCACCACGAGAACAGTAGAGG
CGCCAGAGGCGAACGGCAACGAGGAGACGAGTGTTCGCTCGCCATCATTA
GAGCTAGACGCCGGTCTCAGCATTTTCCTGAACTTAGCCGACGGCGAGAA
ACGACATGGCAGGATGACGGACACCGCCGATCAGGGTCGTTAGGATCGCC
GGCAATTGCGACGACGACGAATTATCGACCGTGGCTCAAAGGTCGTCGCA
ACGCCTCGGCGCCTCCTACGGCAGCACCCACCGTACCTTCGTCGTCGTCC
CCCGCATTCTTCGGGAATGGTGACGATTCGCGGTACTGGGACTACGCTTT
CCGTTCCACGCACAGGGGGGATCTGGGCCATAGCTGCCGGGAGTGCAAGA
GACCGTTTTTGAATCTGAATGAGACCATCGCCGTGAGAAGGTAGGGGGGA
ATACAATACAGTACATGCATCCAAATCAACATGTTTTAGCGCTCCTCTTG
TATATTCCTCCCGCATCAACGACAGGGCGTGGTGAGATTTGGATTGTCAT
GAATACCCGAATCACCAAGCACACATCGAGTCGATCATTTTCTTATTATG
GAGAAAAACGCGTTCAACTGCTCCCGCGAAGGCCTCGTACACGCGGGAAC
ACAGAAGCCAATCTTGAGCAGGTCTCAATTCCATCGTCGTGAACAGTTGT
TCCGAGAACCCCGTGCGAGATACAATCTTTATAAATACACATCACAAGAG
GCCTCTATTTGTGACCCCAGTTCGCGCCTCGGATCATTTGTCCGCGTCTA
TTGTATTCGATCGATCACACGCCCGGCGGCGTCGACCACATTCGCGTCAA
TGCAAGAGGTGGCCGGATCGAGCTGAAATACCATCAAGCGTGCTTCAGCA
TGGTTGCCGACCCTCGTAGTCAACCGACGAGCTCGGCGAACGTTGGAAAG
TTCGTGGATGCGCTCAAAGATACCGCCGCGCCGGAAGAGCTGTACCGCAA
GATGCGCACGCGAGGTCATTGGTGATAAGGTCAATTTTGCCAGTTCAGCC
GGATCGAAAGGCTTTGCTGGTTGTTCGCATCGGCTGAAAGGTTTCCTGTC
CATGTCTTGACCTGCGTTCGGCATTTTCGCCTTACGTTCACTGTCGTCGT
TCGTTCCATCGCTTCAGGGCGGCAGGGGGTTGTCATCAAAGCCCCGGGTC
ATCGTCATCAGGACGCCTGTCCTGACGATGTCCCGCTTATATGTACACCA
TATTATTCTTCTGGTATATTGGGTGTTTCCTTGTCAGTGATGGCTTCTGC
CATATAAAGTATCAAATAACTGTGGGGTCTCCCTATATGATTTTGTTTTT
TTGCCGTACAAGCACAAGTCTTAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig922:115875..117699+

>mRNA_A-nodosum_M_contig922.12.1 ID=mRNA_A-nodosum_M_contig922.12.1|Name=mRNA_A-nodosum_M_contig922.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig922:115875..117699+ (Ascophyllum nodosum dioecious)
ATGGATGAGAAGCAACGACATCCTGACGTCAACACCCCGAGTACCGACAT
CGTCCGGCGAAACAAGTGGATTAGCTCGCTTACTGAAAGTTCCCGACCAG
GTCAATTCCCACACGAAGATCGCGGACATGATGCGAAGGAAGATTTCCAG
GGCGTGCACCACGAGAACAGTAGAGGCGCCAGAGGCGAACGGCAACGAGG
AGACGAGTGTTCGCTCGCCATCATTAGAGCTAGACGCCGGTCTCAGCATT
TTCCTGAACTTAGCCGACGGCGAGAAACGACATGGCAGGATGACGGACAC
CGCCGATCAGGGTCGTTAGGATCGCCGGCAATTGCGACGACGACGAATTA
TCGACCGTGGCTCAAAGGTCGTCGCAACGCCTCGGCGCCTCCTACGGCAG
CACCCACCGTACCTTCGTCGTCGTCCCCCGCATTCTTCGGGAATGGTGAC
GATTCGCGGTACTGGGACTACGCTTTCCGTTCCACGCACAGGGGGGATCT
GGGCCATAGCTGCCGGGAGTGCAAGAGACCGTTTTTGAATCTGAATGAGA
CCATCGCCGTGAGAAGAGGTGGCCGGATCGAGCTGAAATACCATCAAGCG
TGCTTCAGCATGGTTGCCGACCCTCGTAGTCAACCGACGAGCTCGGCGAA
CGTTGGAAAGTTCGTGGATGCGCTCAAAGATACCGCCGCGCCGGAAGAGC
TGTACCGCAAGATGCGCACGCGAGGTCATTGGTGA
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