mRNA_A-nodosum_M_contig921.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig921.6.1
Unique NamemRNA_A-nodosum_M_contig921.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A6H5L7C8_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C8_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 4.400e-109
Identity = 184/352 (52.27%), Postives = 229/352 (65.06%), Query Frame = 3
Query:    3 ELVDVCNPSHRKALKEISHFSWYALAIYTWYLYLFARPCSGGCELLSYSCTAAHAPFTGLRAARSGAPTALSTKITSTPAPTRILRRGGATDHGVARRWHG-RRRQRLPSDHLPASVLRWPPRIGRGAGLGSGGGVSIRGDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALL------GLQTAT----------NRR--PRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            +++DV     R AL+EISHFS YALAIYTWYLY+F RPC G C+LL YSCT     F   R+++           TST         G     G+  +  G R   R   +                      GGVS+RGDNWLG HEA LL+VAG HRGCE VDAHF+SG+  TPYCVLVDH WRCVV+SIRGTMSL+DC+ DL AEPA +EE G++WGFDGRG++ HQGVL RAEW+R+DLE QGH+RALL      G + A           +RR  PR + YSL VTGHSLGGSTG LL+Y+L+ +YPSVRC+A++P+GGLL+  HAE+C +FV+ + +G+DVVP LS
Sbjct:  291 QVLDVTIGEDRSALEEISHFSRYALAIYTWYLYVFERPCCGACDLLCYSCTGRSRAFHRTRSSKKD----WGNTNTSTNTSAAGGSNGATAAPGIDSKGRGGRSTMRNKPEKDSGXXXXXXXXXXXXXXXXXRGGVSVRGDNWLGTHEAALLKVAGLHRGCEVVDAHFASGVVETPYCVLVDHAWRCVVVSIRGTMSLDDCLCDLQAEPACMEESGKRWGFDGRGMYAHQGVLARAEWVRKDLEDQGHIRALLLGGGPAGEEGAPQKVASAAPGGDRRTPPRFRDYSLRVTGHSLGGSTGALLAYMLRWEYPSVRCLAVSPLGGLLNSPHAENCGEFVLSSALGEDVVPRLS 638          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: D7FZ60_ECTSI (BiP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ60_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 3.890e-97
Identity = 167/322 (51.86%), Postives = 205/322 (63.66%), Query Frame = 3
Query:   93 YLYLFARPCSGGCELLSYSCTAAHAPFTGLRAARSG-APTALSTKITSTPAPTRILRRGGATDHGVARRWHGRRRQRLPSDHLPASVLRWPPRIGRGAGLGSGGGVSIRGDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALL------GLQTATNR------------RPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            YLY+F RPC G C+LL YSCT     F   R+++     T                   G    G   R   R +    S     +V   P  +G       G GVS+RGDNWLG HEA LLRVAG HRGCE VDAHF+SG+  TPYCVLVDH WRCVV+SIRGTMSL+DC+ DL AEPA +EE G++WGFDGRG++ H+GVL RAEW+R+DLE QGH+RALL      G + A  R             PR + YSL VTGHSLGGSTG LL+Y+L+ +YPSVRCVAI+P+GGLL+  HAE+C +FV+ + +G+DVVP LS
Sbjct:    4 YLYVFERPCCGACDLLCYSCTGRSRAFHRTRSSKKDWGNTXXXXXXXXXXXXXXXXXXXGIDSKGRGGRSTMRNKTEKDSGGGGGNVXXXPGGVG-------GPGVSVRGDNWLGTHEAALLRVAGLHRGCEVVDAHFASGVVETPYCVLVDHAWRCVVVSIRGTMSLDDCLCDLQAEPACMEESGKRWGFDGRGMYAHEGVLARAEWVRKDLEDQGHIRALLLGGGPAGEEGAPQRVASVAPGGGRRTPPRFRDYSLRVTGHSLGGSTGALLAYMLRWEYPSVRCVAISPLGGLLNSPHAENCGEFVLSSALGEDVVPRLS 318          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: B8BW96_THAPS (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW96_THAPS)

HSP 1 Score: 171 bits (433), Expect = 9.260e-46
Identity = 84/195 (43.08%), Postives = 122/195 (62.56%), Query Frame = 3
Query:  417 GDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            GDN+L IHE  ++  AG  R  +   A F +G + TPYC+++D +W+ VV+SIRG+++LEDCV D+  +P+ ++  G K+GF G G + H GVLE  +W+  DL     L  LL    A  R      Y+L + GHSLGG  GV+LS +L++ YP++RC+A +P GGLL    A SC +FV   ++  D+VP LS
Sbjct:  134 GDNFLRIHERTMMAHAGLDRS-DIAYASFETGFYETPYCIVIDRKWKSVVLSIRGSLTLEDCVVDVLLDPSPLDALGDKYGFAGEGQYCHGGVLECTQWLHSDLMRNNILETLLMGDNAQCR-----GYALRIVGHSLGGGIGVILSLMLRQTYPNLRCIAYSPPGGLLTHDLATSCSEFVNTFILDSDIVPRLS 322          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A7S1ZJB5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJB5_TRICV)

HSP 1 Score: 163 bits (413), Expect = 2.110e-43
Identity = 88/201 (43.78%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  411 IRGDNWLGIHEAGLLRVAGFHRGCEAVD---AHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHL-RALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            I GDN    H   LL     H G ++ D   AHF SG   TPYCV++D  WR VV+SIRGT+SLEDCV D+  +P  ++  GR+ GFDG G   H GVL+R+ W+  DL+  G L R LLG             YSL + GHSLG +   +LS+++++ YPSVRC+  +P GG L    A  C  F    V+  D+VP LS
Sbjct:   18 IDGDNCCRAHRTALL----LHAGLDSSDLRYAHFRSGFRETPYCVVIDRRWRTVVLSIRGTLSLEDCVVDVLLDPEPLDGLGRECGFDGDGQHCHGGVLDRSRWVHSDLKRHGILERLLLGPDA------ECPGYSLRIVGHSLGAAVASILSHMMRRTYPSVRCLCYSPPGGFLSWRLATECRHFTTSFVLDSDLVPRLS 208          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A7S4R4T3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4T3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 5.930e-43
Identity = 111/325 (34.15%), Postives = 155/325 (47.69%), Query Frame = 3
Query:   36 KALKEISHFSWYALAIYTWYLYLFARPCSGGCELLSYSCTAAHAPFTGLRAARSGAPTALSTKITSTPAPTRILRRGGA-TDHGVARRWHGRRRQRLPSDHLPASVLRWPPRIGRGAGLGSGGGVSIRGDNWLGIHEAGLLRVAGFHR--GCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            + L+E + +S +ALAIYTW LY++  P +G C L           FT  R  R G                R++    A T  G A   +G      P+   P                       + GDN  G H AGLL +         +       SG   TPYC+++DH+W  VV+SIRGT+SLEDC+ D+  +P S+EE GR++GFDG G F H GVL+   W+  DL+  G L  LL    A        +Y L + GHSLG    VLLS ++++ YP++RC++ +P G  +    A  C DFV   V+  D +P LS
Sbjct:  485 QTLEEGARYSRFALAIYTWVLYVYMNPMTGLCSL----------GFTRCR--RFG---------------RRLMSSSSADTTDGTATATNG------PTPSSP-----------------------VIGDNCFGAHHAGLLSLLDVSTVSPSDVRYVQLESGFSETPYCIVIDHKWSSVVVSIRGTLSLEDCIVDVLVDPESLEELGREFGFDGEGQFCHAGVLDCTRWIYDDLQRHGILEQLLLGDNA-----EFPNYKLRIVGHSLGAGCAVLLSCMMRRTYPNLRCLSYSPPGMFITWKLATECRDFVTSFVLDSDFIPRLS 748          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: K0RXX4_THAOC (Lipase_3 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXX4_THAOC)

HSP 1 Score: 158 bits (399), Expect = 2.060e-39
Identity = 79/197 (40.10%), Postives = 118/197 (59.90%), Query Frame = 3
Query:  411 IRGDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            I GDN +GIHE+ LL   G     +   A F +G + TPYC+++D +W+ +V++IRG+++LEDCV D+  EP+ ++  G ++GFDG G + H GV+E   W+ +DL+    L  L+G            SY+L V GHSLG   G +LS +L+   PS+RC+  +P GGL+    A+ C  FV   V+  D+VP LS
Sbjct:  495 IIGDNCIGIHESTLL-AHGKIAPDDLAYASFGAGFYETPYCIIIDRKWKSIVLAIRGSLTLEDCVVDVLLEPSPLDALGERYGFDGDGQYCHGGVVECTMWLYEDLKNHRILETLMG---------EFPSYTLRVVGHSLGAGIGFILSLMLRSTIPSLRCLCYSPPGGLVTWDLAKECSGFVNSFVLDSDIVPRLS 681          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A1Z5KQ66_FISSO (Sn1-specific diacylglycerol lipase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ66_FISSO)

HSP 1 Score: 157 bits (397), Expect = 3.040e-39
Identity = 111/333 (33.33%), Postives = 152/333 (45.65%), Query Frame = 3
Query:    6 LVDVCNPSHRKALKEISHFSWYALAIYTWYLYLFARPCSGGCELLSYSCTAAHAPFTGLRAARSGAPTALSTKITSTPAPTRILRRGGATDHGVARRWHGRRRQRLPSDHLPASVLRWPPRIGRGAGLGSGGGVSIRGDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHL-RALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            L+D  + S  + L+E + ++ YALAIYTW LY++ RP +G  ELL   C A                                                G+ R+   S+ L  S       IG              GDN    H   LL  A      + V A   SG    PYC+++DH W+ VV+SIRGT SLEDCV D+  +P S+E+ G ++GFDG G F H GV+     + +DLE    L R LLG   A         YSL + GHSLG +TG LLSY+L+  YP++RC+  +P+G       A  C ++     +  D+VP LS
Sbjct:  329 LLDRNSFSDMQCLEEGARYASYALAIYTWVLYVYERPITGPLELLGRGCIAC---------------------------------------------CRGKYRRADSSEGLSISGESELLEIGE---------AEFYGDNMCHTHRNALLLSANLS-DADLVYAQLRSGFRDNPYCIILDHAWKTVVVSIRGTFSLEDCVTDVLIQPESLEKLGEEFGFDGHGQFCHGGVMNCVRNVYRDLERHHLLERLLLGPNAA------YPDYSLRIVGHSLGAATGTLLSYMLRHKYPNLRCLNYSPVGCAFTWDLATGCSEWCDSFFVDSDIVPRLS 600          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A7S0KXE0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KXE0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.950e-39
Identity = 74/195 (37.95%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  417 GDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            GDN   IH++ +L   G     + V A   S     PYC+L+DHEW  VV+SIRGT SLEDC+ D+  +P  +++ G ++GF+G G   H G+L  A  + +DLE+ G L  LL          + ++Y L + GHSLGG T +LLS+++++ +P +RCV  +P G  +    A +C +F    ++  D+VP LS
Sbjct:    1 GDNCCQIHKSAMLLQTGLTEA-DIVYAQLQSSFTQIPYCILLDHEWNTVVLSIRGTFSLEDCITDVTIDPEPLDDLGNEFGFNGDGEHCHGGILTCARIVHRDLESHGILNRLL-----LGEHAKYRNYKLRIVGHSLGGGTAILLSFMMRQKFPDLRCVTHSPPGCSMSWGLATACQEFTTTFILDSDIVPRLS 189          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A4D9CQJ2_9STRA (Lipase_3 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.390e-38
Identity = 109/338 (32.25%), Postives = 155/338 (45.86%), Query Frame = 3
Query:   21 NPSHRKALKEISHFSWYALAIYTWYLYLFAR-PCSGGCELLSYSCTAAHAPFTGLRAARSGAPTALSTKITSTPAPTRILRRGGATDHGVARRWHGRRRQRLPSDHLPASVLRWPPRIGRGAGLGSGGGVSIRGDNWLGIHEAGLLRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALL----------GLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            +P  R+ L+E +HF  YALA+Y+W ++ +A+ PC                           A  ALS +        R+LR       G   R HG                           LG+     + GDNWL  HEAGL        GCE   A F + ++  PY + VDH+W+CVV++IRGT+SLED + D HAEP  ++  G+ WGF G G   H G+   A+ + +DL     L+ L+          G  T   +  +   Y L + GHSLG    V LS +L++D+P +RC+A    GGLL    AE    F +  V+G D+VP L+
Sbjct:  349 DPGDRQVLEEGTHFEAYALAMYSWMMFTYAKTPCV--------------------------AIPALSAR--------RLLR----MPKGPRSRVHG--------------------------DLGA-----VLGDNWLRGHEAGLWEWLNGREGCELAYATFINTLYERPYGIFVDHKWQCVVVAIRGTLSLEDLLNDAHAEPGPLDAMGKAWGFPGDGEHGHVGMANAADCIAKDLCKHRILQRLIQRDHGDSPPAGPHTPLTKSSK--GYGLRIVGHSLGAGAAVFLSLMLRRDFPDLRCLAYCTPGGLLTPGLAEYTKAFTLTFVLGRDLVPRLT 615          
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Match: A0A7R9ZB61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZB61_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.440e-38
Identity = 75/183 (40.98%), Postives = 107/183 (58.47%), Query Frame = 3
Query:  453 LRVAGFHRGCEAVDAHFSSGIFATPYCVLVDHEWRCVVISIRGTMSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLETQGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPSVRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*LS 1001
            LR  GFH     +     +GI  TPYC+L+D+EW+ V+++IRGT S ED + DL   P+ ++  GR+ GFD  G F H+G+L R++W+  DL     L  LL         PR   Y L +TGHSLG     L+S +L++ +P++RC A  P GGL+ E  AE C DFV+  V   D++P +S
Sbjct:   93 LRDIGFHH-TSVLYLQEVNGIAKTPYCILLDNEWKTVIVAIRGTRSFEDIIVDLQLTPSKMDYVGRRCGFDASGQFCHKGILTRSKWIYDDLACHQILNELL-----LGENPRCAGYRLVITGHSLGAGCATLISLMLRQRFPTLRCYAFCPPGGLITERLAEVCEDFVVSVVNDTDIIPRMS 269          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig921.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7C8_9PHAE4.400e-10952.27Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7FZ60_ECTSI3.890e-9751.86BiP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
B8BW96_THAPS9.260e-4643.08Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
A0A7S1ZJB5_TRICV2.110e-4343.78Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4R4T3_9STRA5.930e-4334.15Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0RXX4_THAOC2.060e-3940.10Lipase_3 domain-containing protein n=1 Tax=Thalass... [more]
A0A1Z5KQ66_FISSO3.040e-3933.33Sn1-specific diacylglycerol lipase n=2 Tax=Fistuli... [more]
A0A7S0KXE0_9STRA6.950e-3937.95Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A4D9CQJ2_9STRA1.390e-3832.25Lipase_3 domain-containing protein n=2 Tax=Monodop... [more]
A0A7R9ZB61_9STRA2.440e-3840.98Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig921contigA-nodosum_M_contig921:78278..80446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps261941
PFAMsLipase_3
Model size1001
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.63e-29
EggNOG OGsKOG2088@1|root,KOG2088@2759|Eukaryota,2XB6H@2836|Bacillariophyta
DescriptionLipase (class 3)
Cds size411
COG categoryIOT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870389.8428156-UTR-A-nodosum_M_contig921:78277..782831680870389.8428156-UTR-A-nodosum_M_contig921:78277..78283Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig921 78278..78283 -
1680870389.87475-UTR-A-nodosum_M_contig921:79343..798361680870389.87475-UTR-A-nodosum_M_contig921:79343..79836Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig921 79344..79836 -
1680870389.8849804-UTR-A-nodosum_M_contig921:80355..804461680870389.8849804-UTR-A-nodosum_M_contig921:80355..80446Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig921 80356..80446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870389.8553472-CDS-A-nodosum_M_contig921:78283..785891680870389.8553472-CDS-A-nodosum_M_contig921:78283..78589Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig921 78284..78589 -
1680870389.8650048-CDS-A-nodosum_M_contig921:79238..793431680870389.8650048-CDS-A-nodosum_M_contig921:79238..79343Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig921 79239..79343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig921.6.1prot_A-nodosum_M_contig921.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig921 78284..79343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig921.6.1

>prot_A-nodosum_M_contig921.6.1 ID=prot_A-nodosum_M_contig921.6.1|Name=mRNA_A-nodosum_M_contig921.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
MSLEDCVYDLHAEPASIEEYGRKWGFDGRGVFTHQGVLERAEWMRQDLET
QGHLRALLGLQTATNRRPRLQSYSLYVTGHSLGGSTGVLLSYVLQKDYPS
VRCVAITPMGGLLDEAHAESCLDFVIFAVMGDDVVP*
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mRNA from alignment at A-nodosum_M_contig921:78278..80446-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig921.6.1 ID=mRNA_A-nodosum_M_contig921.6.1|Name=mRNA_A-nodosum_M_contig921.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2169bp|location=Sequence derived from alignment at A-nodosum_M_contig921:78278..80446- (Ascophyllum nodosum dioecious)
GGGAGCTCGTGGACGTGTGCAACCCCTCCCACCGCAAGGCTCTGAAGGAG ATATCACACTTCTCGTGGTACGCGCTGGCGATTTACACTTGGTGAGAGCA GAGGGCATGGGAAGGGGGTGGACGTCATTTGAGGGTATGTGTAGCCTTCG TTTGATTCACGCCAGGCAGAGGGGGGGAGGGGCTTGTTCTTAGCGTTTTA TTGGTCAACGTGGATCTGCAGATCGTTAGTTCGGGTCTGTACAGATTTCC ATTAGTAACATGCGTAAAAAAAAAATCGCCTTTGTTTGTCTTTGTGCCTA ATGTGTTTGTATCTGTGTGTCTGTGTGCTTCATGGAACCCCGGACATTTT TTTTTTCCGGTAGTCGGACAAGGGGAGGCGATGCAGTCGTGCTCATCCTC GTCTCCATCCTCCCTAATAATTGATATTTTACAGAAAATGTCGCTAGGTG CGAGAGAAGGGGTCGAGGTTTATTGGCCGCAAACCTCCCCGCGTGTCAAG CTCTCTCCCACGACCTGACCCCCTTCCCCGATCCCTCCCACCATTCGTTG ATCCCTTCATTGCGCCAAACGGAAAACGACCACGTCTGAACGTCAAAACT CGACACCCAGGTACCTTTACCTATTCGCTCGGCCTTGCTCGGGGGGTTGC GAGCTCTTGTCCTACAGTTGCACGGCCGCGCACGCGCCTTTCACAGGGCT CCGGGCAGCAAGAAGTGGAGCTCCGACAGCACTCTCGACGAAGATAACGT CGACTCCGGCGCCGACGCGGATTCTGAGGCGCGGCGGAGCGACGGACCAC GGCGTGGCGCGCCGGTGGCACGGTCGGCGGAGGCAGAGGCTACCTTCGGA CCATCTCCCAGCATCGGTGTTGAGATGGCCTCCGCGGATCGGAAGGGGCG CCGGTCTCGGCAGCGGCGGCGGGGTGTCGATCCGTGGAGATAATTGGCTG GGCATTCACGAGGCCGGGCTCCTGCGGGTGGCGGGATTTCACCGCGGCTG CGAGGCGGTGGACGCGCACTTCAGCTCAGGGATCTTTGCAACGCCTTACT GCGTGCTAGTGGATCACGAGTGGCGATGCGTCGTGATTTCTATCAGGGGC ACCATGTCCCTCGAAGACTGCGTGTACGATCTCCACGCCGAGCCCGCGTC CATTGAGGAGTACGGAAGGAAGTGGGGTTTCGACGGCCGGGGCGTGTTCA CTCACCAGGTATGGGGGCGCGGTACGACGGGTGTTGACGGTATGTTCCGA GAAGGAAGGGGGGAGAGGGGTCGGGGGACTTTTTCGGGTTCTAGTATTTA CGACCTTTTGTTGGGTTGGAGGATGCATCGGATGTGTTATGAGCGATGTT GTGTGGTTGATTTTTTTTTTACAGGTATATAGTTTTGTCATGTATCTCTT GCGCCTTGAGAAAGATAAAGAGCGGTCAAAGCCGTCGTGTTCGGCGATCC CCTGCACTGAGAACACACAACCCTGCGCGTCGATATCTCAAATGGTACGC GAACAAGAGTTCGGGATTTTTTTATCTGTGCGTTTTGTTTTTGTTACTTA TTTGTTTGTTTTCTACCGGTATTGCTGTTGGACAAACCATCTCCATGCAC ATGCACCCGCTTCTTTCTTTTGTGACTTTCCCCTTGATGCACCCTCGTGT TCCTTTCGTCTTTCACCATCCACCGCCGCGCCAGAGCAAATCACGAGAAA CGGACCGAGGGGTGTGATTGCATCCGCCCCGGCCACCCCCCCGTCCAACC CCATCACATGGCCTCCATAAAAATAATAATAATAATAATAAAGAAACGAA ACATAGAAAAACCCAAACCAAACCTATCGGTCGCCTCGATTTTCCTATTT GATTAAGGGTGTGCTCGAACGGGCGGAGTGGATGAGGCAGGACCTGGAGA CTCAGGGACACCTCCGCGCTCTCCTGGGCCTTCAGACCGCAACAAACCGA CGGCCGCGCCTCCAGTCGTATTCTCTGTACGTGACGGGGCACTCCCTGGG AGGCAGCACGGGCGTGCTCCTGTCTTACGTGCTCCAGAAGGACTACCCCT CCGTGAGGTGCGTCGCTATCACCCCCATGGGCGGCCTGCTGGACGAGGCG CACGCGGAGAGCTGCTTGGACTTCGTGATCTTCGCGGTGATGGGGGACGA CGTCGTCCCGTAGCTTTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig921:78278..80446-

>mRNA_A-nodosum_M_contig921.6.1 ID=mRNA_A-nodosum_M_contig921.6.1|Name=mRNA_A-nodosum_M_contig921.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig921:78278..80446- (Ascophyllum nodosum dioecious)
ATGTCCCTCGAAGACTGCGTGTACGATCTCCACGCCGAGCCCGCGTCCAT
TGAGGAGTACGGAAGGAAGTGGGGTTTCGACGGCCGGGGCGTGTTCACTC
ACCAGGGTGTGCTCGAACGGGCGGAGTGGATGAGGCAGGACCTGGAGACT
CAGGGACACCTCCGCGCTCTCCTGGGCCTTCAGACCGCAACAAACCGACG
GCCGCGCCTCCAGTCGTATTCTCTGTACGTGACGGGGCACTCCCTGGGAG
GCAGCACGGGCGTGCTCCTGTCTTACGTGCTCCAGAAGGACTACCCCTCC
GTGAGGTGCGTCGCTATCACCCCCATGGGCGGCCTGCTGGACGAGGCGCA
CGCGGAGAGCTGCTTGGACTTCGTGATCTTCGCGGTGATGGGGGACGACG
TCGTCCCGTAG
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