mRNA_A-nodosum_M_contig920.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig920.4.1
Unique NamemRNA_A-nodosum_M_contig920.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: W1Q6T6_OGAPD (Exonuclease 1 n=4 Tax=Ogataea TaxID=461281 RepID=W1Q6T6_OGAPD)

HSP 1 Score: 95.5 bits (236), Expect = 1.700e-18
Identity = 89/305 (29.18%), Postives = 143/305 (46.89%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNAN---GCVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDFRRGPAYLTGKLFN---ETAV-----ERLEMVAALSGCDWCK-FPSIGSATAIKRVWQDGANVDKQATAVSLLSSPRVP-----PLQAKHSIQTAITMFRHSIAFSIRTQITVHL 864
            MGV GL  +L + + +   L  +  GK + +D +   H+ A    A  +V    +    N   +R+      G+   +V DG   P K  T   R  RRKE  R   EA +  +RS+  N       I   +   +++AL+  +   +VAPYEADAQ++ LE       + + D+DLL+ G + LI+++D       +    F    E+A+     E+L+++A +SGCD+ K  P++G   AI  V       ++ +T   LL + R       P++ +     AIT F H + F  RTQ  VHL
Sbjct:    1 MGVTGLLPALKS-IQEVSHLEKY-RGKTLAIDTYAWLHK-AIYGCAMEIVLEKPTRAYLNYMNRRLDMSAHYGITPYMVLDGDYLPTKANTEKEREGRRKEYKRLGLEALRANKRSEAYNYFNKACDITPQIAKSVIEALKSRNIQYVVAPYEADAQMVYLEKHGIVQGIISEDSDLLIFGCQRLITKLDDSGACIEVRRDKFKDCRESAIGLFSNEQLKLMAIVSGCDYTKGIPNVGMQRAINLV-------NRYSTIGRLLQAVRYEGKLKVPVEFETEYYRAITAFNHQVVFDPRTQKPVHL 295          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: UPI001C8ABB9A (uncharacterized protein n=1 Tax=Ogataea haglerorum TaxID=1937702 RepID=UPI001C8ABB9A)

HSP 1 Score: 94.4 bits (233), Expect = 4.260e-18
Identity = 86/300 (28.67%), Postives = 143/300 (47.67%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQ---NANGCVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDFRRGPAYLTGKLFNE---TAV-----ERLEMVAALSGCDWCK-FPSIGSATAIKRVWQDGANVDKQATAVSLLSSPRVPPLQAKHSIQTAITMFRHSIAFSIRTQITVHL 864
            MGV GL  +L + + +   L  +  GK + +D +   H+ A    A  +V    +    N   +R+      G+   +V DG   P K  T   R  RR+E  R   EA +  +RS+   + N    I   +   +++ L+  +   +VAPYEADAQ++ LE       + + D+DLL+ G + LI+++D       +    F E   +A+     E+L+++A +SGCD+ K  P++G   AI  V +  + + +   AV      +VP ++ +     AIT F H + F  RTQ  VHL
Sbjct:    1 MGVTGLLPALKS-IQEASHLEKY-RGKTLAIDTYAWLHK-AIYGCAMEIVLEKPTRAYLNYMSRRLDMLAHYGITPYMVLDGDYLPTKANTEKEREERRREYKRLGLEALRANKRSEAYNHFNKACDITPQIAKSVIEELKSRNIQYVVAPYEADAQMVYLEKHGIVQGIISEDSDLLIFGCQRLITKLDDSGSCIEVRRDKFKECWESAIGLFSDEQLKLMAIVSGCDYTKGIPNVGMQRAINLVSRY-STIGRLLQAVRYEGKLKVP-VEFETEYYRAITAFNHQVVFDPRTQKPVHL 295          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.470e-17
Identity = 68/198 (34.34%), Postives = 107/198 (54.04%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIAD-SLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGER-----SQNANGCVSINQDV--VTVILKALQDNDFYAMVAPYEADAQVILLE---AELGA-VFVYANDADLLVMGVKNLISEI 558
            MG+  L K   +  + +V+L++      +IVDG F+ HR  TR  A   L+   D  PL       + RF   G KV VV DG+ PPAK+ T+ AR  +R+ A     E ++ G R      + +N CV  ++ V  V  +L+     + Y  +AP EAD Q+++ +    E G  V+VYAND+DL+V+GV++L+ ++
Sbjct:    1 MGILSLSKHAKSVGSLSVNLQHAEHDDRIIVDGGFLLHRCCTRRTAARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVY--IAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDV 196          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A0A0F9XJE0_TRIHA (Exonuclease 1 n=6 Tax=Trichoderma TaxID=5543 RepID=A0A0F9XJE0_TRIHA)

HSP 1 Score: 92.8 bits (229), Expect = 1.930e-17
Identity = 80/252 (31.75%), Postives = 129/252 (51.19%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLP---LANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNANG---CVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDF--------RRG-----PAYLTGKLFNETAVERLEMVAALSGCDWCK-FPSIGSATAIK 696
            MGV GL   L + + K  +L+ F +G+ + VDG+   HR A        VE G   P     NA + R+   +  G+   +VFDG   P+K  T ++R+ +R++ L+   E  K G+ SQ A     C+ I  ++ + +++ L+  D   +VAPYEADAQ++ LE       + ++D+DLLV G K L++++D         RR         LTG  +++T   R+   A +SGCD+    P +G  TA +
Sbjct:    1 MGVSGLLPLLKS-IQKPTELKKF-NGETLAVDGYGWLHRAAY----SCAVELGQGKPTKKFINAALHRVKMLKHFGVTPYMVFDGDFLPSKAATEASRAKKREDKLKLANEYLKAGKSSQAAQEFQKCIDITPEMASALIQQLRKMDIPYVVAPYEADAQLVYLERHGFVDGIISDDSDLLVFGAKRLLTKLDQYGNCIEINRRDFCACREISLTG--WSDTEFRRM---AIMSGCDYLNGLPGVGLKTAYR 241          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A0A1Y2CWP9_9FUNG (Exonuclease 1 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CWP9_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 3.230e-17
Identity = 84/280 (30.00%), Postives = 130/280 (46.43%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNAN---GCVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDFRRGPAYLTGKLFNET-------AVERLEMVAALSGCDWCKFPSIGSATAIKRVWQDGANVDKQATAVSLL----SSPRVPPLQAKHSIQ 798
            MG+ GL   L A + + V LR+F  G  V VD +   HR A     D  + +  +  ++   +KR+   +E G+   +VFDG   P K  T S R  RRKEA +R  E   KG  ++       CV I  ++   ++K L+      +VAPYEADAQ++ LE       V   D+DLLV G + L+ +++       +  K F +        +  +      LSGCD+   PS+     IK+ + D  N    A  VS+L     S + PP++  +  +
Sbjct:    1 MGISGLLPLL-APIQRQVHLRDF-KGLTVAVDTYVWLHRAAFGCAMDLGLNKPTTAYISFC-MKRIALLKEHGITPLLVFDGGCLPMKHHTESERRKRRKEARKRAHEELAKGNNAKAMEMFQQCVDITPNMAWELMKVLRKQGIEFIVAPYEADAQLVYLEKIKKVDAVLTEDSDLLVFGCQRLLLKLEASGNLIEIRAKDFPQVPCMKKGWSFAKFRQACILSGCDY--LPSL-KGVGIKKAF-DALNGTSDAERVSILLTFGHSMKAPPVRDNYQAE 273          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: Q6C5Y7_YARLI (Exonuclease 1 n=3 Tax=Yarrowia lipolytica TaxID=4952 RepID=Q6C5Y7_YARLI)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-17
Identity = 83/270 (30.74%), Postives = 126/270 (46.67%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRF-REIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNAN---GCVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDFRRGPAYLTG---------KLFNETAVERLEMVAALSGCDWCK-FPSIGSATAIK--RVWQDGANVDKQATAVSLLSSP 762
            MGV GL   L    A    +  F  G+ + VDG    H+ A  +  D  + R    P    +V R   F +  G+ V +VFDG A P+K  T+  R   R +A +       +G RS+  N       I Q++V  + + L+      +VAPYEADAQ++ LE    A  + + D+DL+V G + L++++D   G   + G         +L +E  +E L  +A LSGCD+C   P++G   A +  R WQ    + K        SSP
Sbjct:    1 MGVSGLLPLLKPIQA-AAHISEF-KGQRLAVDGFAWLHKAAFGSAEDLALNRPTDRP--QQWVMRKVEFLKRCGVDVLIVFDGGALPSKRGTDEKRHALRDQAHKEALALMSRGRRSEAVNLFQKATRITQEMVHQLTELLKSQRIPFVVAPYEADAQLVYLEKAGYATGIISEDSDLVVYGAQMLVTKLDPSGGCVTVDGSRISSCSDLELGSEVPLEYLRYMAILSGCDYCDGVPNVGPKRAARYIRRWQTPEAIIKALRMDGYNSSP 266          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A0A0N0RT53_9HYPO (Exonuclease 1 n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0N0RT53_9HYPO)

HSP 1 Score: 90.5 bits (223), Expect = 1.180e-16
Identity = 80/252 (31.75%), Postives = 127/252 (50.40%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLA---NAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNANG---CVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDF--------RRG-----PAYLTGKLFNETAVERLEMVAALSGCDWCK-FPSIGSATAIK 696
            MGV GL   L + + +  +L+ +  G+++ VDG+   HR A        VE G   P     NA + R+   R  G+   +VFDG   P+K  T ++R+ +R+E LR      K G+ SQ A     C+ I  ++ + +++ L+  D   +VAPYEADAQ++ LE       + ++D+DLLV G K L++++D         RR         LTG  + +T   R+   A +SGCD+    P +G  TA +
Sbjct:    1 MGVTGLLPLLKS-IQRPTELKKY-HGEVLAVDGYGWLHRAAY----SCAVELGQGKPTTKYINAALHRVRMLRHFGVTPYMVFDGDYLPSKALTEASRAQKREEKLRLANSLMKAGKPSQAAQEFQKCIDITPEMASALIQHLKKMDVPFVVAPYEADAQLVYLERHGFVNGIISDDSDLLVFGAKKLLTKLDQYGNCIEINRRDFCACREISLTG--WTDTEFRRM---AIMSGCDYLNGLPGVGLKTAYR 241          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: G9NZQ6_HYPAI (Exonuclease 1 n=5 Tax=Trichoderma TaxID=5543 RepID=G9NZQ6_HYPAI)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-16
Identity = 74/245 (30.20%), Postives = 127/245 (51.84%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNANG---CVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVF-VYANDADLLVMGVKNLISEIDFRRGPAYLTGKLF---NETAVE-----RLEMVAALSGCDWCK-FPSIGSATAIK 696
            MGV GL   L + + +  +L+ F +G+ + VDG+   HR A  + A  L +   +    NA + R+   +  G+   +VFDG   P+K  T  +R+ +R+E L+   E  K G+ SQ       C+ I  ++ + +++ L+  D   +VAPYEADAQ++ LE  +G V  + ++D+DLLV G K L++++D       +  + F    E ++          +A +SGCD+    P +G  TA +
Sbjct:    1 MGVSGLLPILKS-IQRPTELKKF-NGETLAVDGYGWLHR-AAYSCAPELAQGKPTKKFINAALHRVRMLKHFGVTPYMVFDGDYLPSKAATEESRAKKREEKLKIANEYLKAGKSSQAVQEFQKCIDITPEMASALIQELKKMDIPYVVAPYEADAQLVYLE-RMGLVGGILSDDSDLLVFGAKRLLTKLDQYGNCIEINRRDFCACREISLTGWSDAEFRRMAIMSGCDYLNGLPGVGLKTAYR 241          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A5DK76_PICGU (Exonuclease 1 n=2 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) TaxID=294746 RepID=A5DK76_PICGU)

HSP 1 Score: 89.4 bits (220), Expect = 2.660e-16
Identity = 79/271 (29.15%), Postives = 132/271 (48.71%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERS---QNANGCVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVF-VYANDADLLVMGVKNLISE---------IDFRRGPAYLTGKLFNETAVERLEMVAALSGCDWCK-FPSIGSATAIKRVWQDGANVDKQATAVSLLSSPRVP 771
            MGV GL + L   + +  +L ++  GK + VD +   HR    + A  L +   +    N+ +K++   R  G++  +VFDGA  P K  T   R  +R+EA ++ +   K+G+R    +       +  ++   I+  L       +VAPYEAD Q++ LE ++GAV  + + D+DLL+ G + LI++         ID    P        +    ++L +VA L+GCD+ K  P IG  TA   VW+ G   D  +   +L +  +VP
Sbjct:   52 MGVTGLLQHLKE-IQEPSNLASY-KGKTLAVDTYGWLHR-GLISCAQELCQNQPTRKYVNSVIKKVDMLRHFGVEPYLVFDGAYLPTKAETAKERRIKREEAQQKADLLLKRGDRKSAWKEFMKAAGVTPEMAKSIMVELDARKVKYVVAPYEADPQMVYLE-KIGAVDGILSEDSDLLIFGCQRLITKLNDYGECVVIDRANFPKVKKIPQLSSYTQQQLRLVAMLAGCDYTKGIPGIGLKTAFTLVWKHG---DLNSVLSALDAEGKVP 315          
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Match: A0A2T4AYD0_9HYPO (Exonuclease 1 n=1 Tax=Trichoderma citrinoviride TaxID=58853 RepID=A0A2T4AYD0_9HYPO)

HSP 1 Score: 89.4 bits (220), Expect = 2.830e-16
Identity = 78/252 (30.95%), Postives = 127/252 (50.40%), Query Frame = 1
Query:    1 MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLVERGDSLP---LANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRKEALRRREEARKKGERSQNANG---CVSINQDVVTVILKALQDNDFYAMVAPYEADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDF--------RRG-----PAYLTGKLFNETAVERLEMVAALSGCDWCK-FPSIGSATAIK 696
            MGV GL   L + + +  +L+ +  G+ + VDG+   HR A        VE G   P     N  + R+   +  G+   +VFDG   P+K  T ++R+ +R+E L+   E  K G+ SQ A     C+ I  ++ + +++ L+  D   +VAPYEADAQ++ LE       + ++D+DLLV G K L++++D         RR         LTG  +++T   R+   A +SGCD+    P +G  TA +
Sbjct:    1 MGVAGLLPILKS-IQRPTELKKY-EGETLAVDGYGWLHRAAY----SCAVELGQGKPTKKFINGAMHRVKMLKHFGVTPYMVFDGDFLPSKAATEASRAKKREEKLKLANEYLKAGKPSQAAQEFQKCIDITPEMASALIQQLKKMDIPYVVAPYEADAQLVYLERHGFVSGIISDDSDLLVFGAKRLLTKLDQYGNCIEINRRDFCACREISLTG--WSDTEFRRM---AIMSGCDYLNGLPGVGLKTAYR 241          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig920.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W1Q6T6_OGAPD1.700e-1829.18Exonuclease 1 n=4 Tax=Ogataea TaxID=461281 RepID=W... [more]
UPI001C8ABB9A4.260e-1828.67uncharacterized protein n=1 Tax=Ogataea haglerorum... [more]
A0A6H5KFX7_9PHAE1.470e-1734.34Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A0F9XJE0_TRIHA1.930e-1731.75Exonuclease 1 n=6 Tax=Trichoderma TaxID=5543 RepID... [more]
A0A1Y2CWP9_9FUNG3.230e-1730.00Exonuclease 1 n=1 Tax=Rhizoclosmatium globosum Tax... [more]
Q6C5Y7_YARLI3.920e-1730.74Exonuclease 1 n=3 Tax=Yarrowia lipolytica TaxID=49... [more]
A0A0N0RT53_9HYPO1.180e-1631.75Exonuclease 1 n=1 Tax=Escovopsis weberi TaxID=1503... [more]
G9NZQ6_HYPAI1.600e-1630.20Exonuclease 1 n=5 Tax=Trichoderma TaxID=5543 RepID... [more]
A5DK76_PICGU2.660e-1629.15Exonuclease 1 n=2 Tax=Meyerozyma guilliermondii (s... [more]
A0A2T4AYD0_9HYPO2.830e-1630.95Exonuclease 1 n=1 Tax=Trichoderma citrinoviride Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig920contigA-nodosum_M_contig920:97976..98968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5270.UM03141P0
PFAMsXPG_I,XPG_N
Model size864
Max annot lvl4751|Fungi
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000706,GO:0000710,GO:0000723,GO:0000729,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0008309,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022402,GO:0022414,GO:0031297,GO:0032200,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0035312,GO:0035861,GO:0042592,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045005,GO:0046483,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051908,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0110025,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505
Exons2
Evalue6.42e-20
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota,38FBD@33154|Opisthokonta,3NWMW@4751|Fungi,3UYHY@5204|Basidiomycota,3N00D@452284|Ustilaginomycotina
DescriptionXeroderma pigmentosum G I-region
Cds size864
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870387.6615155-CDS-A-nodosum_M_contig920:97975..985761680870387.6615155-CDS-A-nodosum_M_contig920:97975..98576Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig920 97976..98576 +
1680870387.678323-CDS-A-nodosum_M_contig920:98705..989681680870387.678323-CDS-A-nodosum_M_contig920:98705..98968Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig920 98706..98968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig920.4.1prot_A-nodosum_M_contig920.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig920 97976..98968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig920.4.1

>prot_A-nodosum_M_contig920.4.1 ID=prot_A-nodosum_M_contig920.4.1|Name=mRNA_A-nodosum_M_contig920.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=288bp
MGVEGLFKSLSACVAKTVDLRNFPSGKLVIVDGHFVAHRLATRNIADSLV
ERGDSLPLANAFVKRMYRFREIGLKVKVVFDGAAPPAKERTNSARSFRRK
EALRRREEARKKGERSQNANGCVSINQDVVTVILKALQDNDFYAMVAPYE
ADAQVILLEAELGAVFVYANDADLLVMGVKNLISEIDFRRGPAYLTGKLF
NETAVERLEMVAALSGCDWCKFPSIGSATAIKRVWQDGANVDKQATAVSL
LSSPRVPPLQAKHSIQTAITMFRHSIAFSIRTQITVHL
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mRNA from alignment at A-nodosum_M_contig920:97976..98968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig920.4.1 ID=mRNA_A-nodosum_M_contig920.4.1|Name=mRNA_A-nodosum_M_contig920.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at A-nodosum_M_contig920:97976..98968+ (Ascophyllum nodosum dioecious)
ATGGGCGTAGAAGGCCTCTTCAAGAGTCTTTCCGCCTGTGTGGCGAAGAC GGTGGACTTACGAAACTTCCCAAGCGGTAAATTGGTTATTGTTGATGGCC ATTTTGTCGCCCATAGACTGGCTACGAGAAATATAGCAGATTCGCTTGTG GAGAGGGGAGACTCCCTGCCACTGGCTAATGCATTTGTTAAAAGAATGTA CCGCTTCCGCGAGATTGGCCTCAAAGTTAAAGTCGTATTCGACGGCGCAG CCCCACCCGCAAAGGAGCGAACCAATTCTGCAAGATCTTTTCGCCGGAAG GAGGCCCTTCGCAGACGTGAAGAAGCTCGGAAGAAAGGGGAAAGGTCACA AAACGCAAATGGTTGCGTAAGCATCAATCAAGATGTCGTTACTGTGATAT TGAAGGCCCTTCAAGATAACGACTTCTACGCAATGGTAGCCCCTTATGAG GCTGATGCACAGGTGATTCTGCTGGAAGCTGAACTCGGTGCCGTTTTCGT GTATGCGAACGACGCCGATCTTCTAGTCATGGGTGTCAAAAATCTGATCA GCGAGATTGATTTCAGGAGAGGGCCAGCATACCTGACTGGGAAGCTCTTC AGTAGGGATGATATAATAGTGCACCCACCAAAAGATGCTTTCCGCGAGAG CTCTTTGATGTGCGTTATTCACGGGCGTGATACAGAGGGTACGCCTGTGC CAGCCGGGACCCTTGGTTCTTTATCACAAGACGAAACTGCTGTCGAGCGA CTGGAGATGGTAGCCGCACTGAGCGGCTGCGACTGGTGCAAGTTCCCCTC CATCGGCAGTGCTACCGCGATCAAAAGAGTTTGGCAGGATGGGGCTAACG TAGATAAACAGGCGACCGCTGTTAGTTTACTTTCGTCACCAAGGGTTCCG CCTCTTCAGGCGAAGCATTCAATCCAGACCGCCATAACCATGTTTCGGCA CAGCATCGCGTTCAGCATCAGGACACAAATAACAGTCCACTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig920:97976..98968+

>mRNA_A-nodosum_M_contig920.4.1 ID=mRNA_A-nodosum_M_contig920.4.1|Name=mRNA_A-nodosum_M_contig920.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at A-nodosum_M_contig920:97976..98968+ (Ascophyllum nodosum dioecious)
ATGGGCGTAGAAGGCCTCTTCAAGAGTCTTTCCGCCTGTGTGGCGAAGAC
GGTGGACTTACGAAACTTCCCAAGCGGTAAATTGGTTATTGTTGATGGCC
ATTTTGTCGCCCATAGACTGGCTACGAGAAATATAGCAGATTCGCTTGTG
GAGAGGGGAGACTCCCTGCCACTGGCTAATGCATTTGTTAAAAGAATGTA
CCGCTTCCGCGAGATTGGCCTCAAAGTTAAAGTCGTATTCGACGGCGCAG
CCCCACCCGCAAAGGAGCGAACCAATTCTGCAAGATCTTTTCGCCGGAAG
GAGGCCCTTCGCAGACGTGAAGAAGCTCGGAAGAAAGGGGAAAGGTCACA
AAACGCAAATGGTTGCGTAAGCATCAATCAAGATGTCGTTACTGTGATAT
TGAAGGCCCTTCAAGATAACGACTTCTACGCAATGGTAGCCCCTTATGAG
GCTGATGCACAGGTGATTCTGCTGGAAGCTGAACTCGGTGCCGTTTTCGT
GTATGCGAACGACGCCGATCTTCTAGTCATGGGTGTCAAAAATCTGATCA
GCGAGATTGATTTCAGGAGAGGGCCAGCATACCTGACTGGGAAGCTCTTC
AACGAAACTGCTGTCGAGCGACTGGAGATGGTAGCCGCACTGAGCGGCTG
CGACTGGTGCAAGTTCCCCTCCATCGGCAGTGCTACCGCGATCAAAAGAG
TTTGGCAGGATGGGGCTAACGTAGATAAACAGGCGACCGCTGTTAGTTTA
CTTTCGTCACCAAGGGTTCCGCCTCTTCAGGCGAAGCATTCAATCCAGAC
CGCCATAACCATGTTTCGGCACAGCATCGCGTTCAGCATCAGGACACAAA
TAACAGTCCACTTG
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