mRNA_A-nodosum_M_contig92.66.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig92.66.1
Unique NamemRNA_A-nodosum_M_contig92.66.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5JR34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR34_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.990e-10
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVRT A NG N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:   59 LSFGTFNVRTLAYNGRNPIGHNVMTVMQICSATDCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 130
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BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.820e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVRT A +G N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:  148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 219
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BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5KI90_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI90_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.340e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVRT A +G N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:   88 LSFGKFNVRTPAYSGRNPIGHKVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 159
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.790e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVRT A +G N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:  820 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 891
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5KQ98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ98_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.540e-9
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVR    +G N +GH + T ++ C+A  CDVIGLQETQR+G   I    Y + + GD +G K  +G
Sbjct:   93 LSFGGFNVRMLVYSGRNPVGHNVMTVMQICSATGCDVIGLQETQREGQCSIAHDGYVIIWSGDRAGTKDKRG 164
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.550e-8
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNV T A +G N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:    9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 80
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.170e-8
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            ++FG FNVRT A +G N IGH + T ++ C+   CDVIGLQET+R+G   I    Y V + G  +G K  +G
Sbjct:  123 VSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRG 194
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-8
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNVRT A +G   IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:   59 LSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 130
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.620e-8
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSLYRVGFRGDCSGVKCIKG 213
            L+FG FNV T A +G N IGH + T ++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K  +G
Sbjct:  657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRG 728
[Close]
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Match: A0A6H5KF07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF07_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.250e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 LTFGMFNVRTAAVNGANGIGH-IDTRLRPCAAKSCDVIGLQETQRDGTSEI 150
            L+FG FNVRT A +G+N IGH + T ++ C+A  CDVIGLQET+R+G   I
Sbjct:  119 LSFGTFNVRTLAYSGSNPIGHNVMTVMQTCSATGCDVIGLQETRREGQGSI 169
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig92.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JR34_9PHAE8.990e-1048.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE3.820e-947.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI90_9PHAE4.340e-947.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0W6_9PHAE4.790e-947.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQ98_9PHAE7.540e-945.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE6_9PHAE1.550e-845.83Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KDU4_9PHAE2.170e-845.83Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JGX2_9PHAE2.980e-845.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE5.620e-845.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF07_9PHAE7.250e-856.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig92contigA-nodosum_M_contig92:847155..847562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870387.399381-UTR-A-nodosum_M_contig92:847154..8473191680870387.399381-UTR-A-nodosum_M_contig92:847154..847319Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 847155..847319 -
1680870387.4323854-UTR-A-nodosum_M_contig92:847550..8475621680870387.4323854-UTR-A-nodosum_M_contig92:847550..847562Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 847551..847562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870387.4206946-CDS-A-nodosum_M_contig92:847319..8475501680870387.4206946-CDS-A-nodosum_M_contig92:847319..847550Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 847320..847550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig92.66.1prot_A-nodosum_M_contig92.66.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig92 847320..847550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig92.66.1

>prot_A-nodosum_M_contig92.66.1 ID=prot_A-nodosum_M_contig92.66.1|Name=mRNA_A-nodosum_M_contig92.66.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp
MFNVRTAAVNGANGIGHIDTRLRPCAAKSCDVIGLQETQRDGTSEIGTSL
YRVGFRGDCSGVKCIKGQWAGDKGDR*
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mRNA from alignment at A-nodosum_M_contig92:847155..847562-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig92.66.1 ID=mRNA_A-nodosum_M_contig92.66.1|Name=mRNA_A-nodosum_M_contig92.66.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig92:847155..847562- (Ascophyllum nodosum dioecious)
CTCACGTTCGGCATGTTTAACGTTCGCACAGCGGCGGTCAACGGCGCCAA
CGGTATCGGTCATATCGACACCCGGCTGAGACCCTGTGCTGCAAAGAGTT
GTGACGTTATTGGACTGCAGGAGACCCAAAGAGACGGAACTTCAGAAATC
GGGACATCTTTATACCGCGTTGGTTTCAGGGGTGATTGCAGCGGAGTAAA
GTGCATAAAAGGGCAATGGGCTGGTGATAAAGGAGATCGTTAAAGAGGCT
GGCAAGGACGGCATCGCAATCGAGTGCATCAGGGCACGTCTCCTGAAGGC
CCGAATTTTGATTAAATCAAATTTCGTTACGTTTGTGGTAGCCTACGCAC
CGACCGAGGAAGCGCCGGAGGGGCGAAAGGCTAAATACATTGCAGGCCTC
AACAACAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig92:847155..847562-

>mRNA_A-nodosum_M_contig92.66.1 ID=mRNA_A-nodosum_M_contig92.66.1|Name=mRNA_A-nodosum_M_contig92.66.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig92:847155..847562- (Ascophyllum nodosum dioecious)
ATGTTTAACGTTCGCACAGCGGCGGTCAACGGCGCCAACGGTATCGGTCA
TATCGACACCCGGCTGAGACCCTGTGCTGCAAAGAGTTGTGACGTTATTG
GACTGCAGGAGACCCAAAGAGACGGAACTTCAGAAATCGGGACATCTTTA
TACCGCGTTGGTTTCAGGGGTGATTGCAGCGGAGTAAAGTGCATAAAAGG
GCAATGGGCTGGTGATAAAGGAGATCGTTAA
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