mRNA_A-nodosum_M_contig92.53.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig92.53.2
Unique NamemRNA_A-nodosum_M_contig92.53.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig92.53.2 vs. uniprot
Match: A0A6H5KAZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.690e-42
Identity = 135/346 (39.02%), Postives = 167/346 (48.27%), Query Frame = 3 
Query: 1116 RSAPLLNECVPPAAFAQVSVQALMQQTSAIIARWKELQETLDVTSDSSTSNLSEQARARASLKRDLTNLTQLADAQTKYMQRIKMRCNQETPM---------------STGVS----GDSIASTSLLASTTPAGRGGLTREEYNH-PTKDSAIPVSAPRGAPVVP--------------SPFPPENS--IGAVLMHEGGDDDVRDSLTTEQQDRSEDPAAAWQPTEWPSSTPSPRQTGVPNPPSPALPPQQVISLQHRLHNARQRLDRAEPRNKWVVLVDACLRLMPHEGSAFEQFFVNIQSLLKNFNGPLGAEVAVALQSCFDERVFDPTDITRAQQRMADIYSQ 2045
            R +PLL++ VPPA  A V+V  L+QQT+  I RW+ELQ+ LDV SDS+++NL+ QA  R+SLKRDLTNL QLADAQTK+ Q++K R  Q                   + GV     G + A     A    A  G  T E Y+  P K   +                          S +   NS   GA+LM +G                    A            PS R  G+                       RQR+DR EP NKWVVLVDA LRL P +G+ FE F   IQ+ L N+NG +GAEVA AL SC D RVFDPTDI RAQ+RMADI S+
Sbjct:   63 RPSPLLSDYVPPAGLALVNVPVLLQQTACAIVRWEELQKNLDVRSDSASANLAAQAHVRSSLKRDLTNLIQLADAQTKHTQKMKFRQMQAMQXXXXXXXXXXXXXXXXAQGVQPLPGGRNPARGGTGAGLDSARAGVATGEAYDEFPPKRKQVXXXXXXXXXXXXXXXXXXXXXXXXNASSYAASNSGPTGAMLMQQGAGXXXXXXXXXXXXXXXXXXAP-----------PSNRHEGI-----------------------RQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSR 374
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BLAST of mRNA_A-nodosum_M_contig92.53.2 vs. uniprot
Match: D8LB93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB93_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.800e-25
Identity = 62/104 (59.62%), Postives = 71/104 (68.27%), Query Frame = 3 
Query: 1734 PSPALPPQQVISLQHRLHNARQRLDRAEPRNKWVVLVDACLRLMPHEGSAFEQFFVNIQSLLKNFNGPLGAEVAVALQSCFDERVFDPTDITRAQQRMADIYSQ 2045
            P P  PP       +R    RQR+DR EP NKWVVLVDA LRL P +G+ FE F   IQ+ L N+NG +GAEVA AL SC D RVFDPTDI RAQ+RMADI S+
Sbjct:  128 PGPGAPPPS-----NRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSR 226
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig92.53.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAZ5_9PHAE5.690e-4239.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB93_ECTSI1.800e-2559.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig92contigA-nodosum_M_contig92:685669..689382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2907
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004740.1
Cds size1806
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870387.3165689-UTR-A-nodosum_M_contig92:685668..6859311680870387.3165689-UTR-A-nodosum_M_contig92:685668..685931Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 685669..685931 +
1680870387.3637471-UTR-A-nodosum_M_contig92:688544..6893821680870387.3637471-UTR-A-nodosum_M_contig92:688544..689382Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig92 688545..689382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870387.3277578-CDS-A-nodosum_M_contig92:685931..6864351680870387.3277578-CDS-A-nodosum_M_contig92:685931..686435Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 685932..686435 +
1680870387.338434-CDS-A-nodosum_M_contig92:686641..6869861680870387.338434-CDS-A-nodosum_M_contig92:686641..686986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 686642..686986 +
1680870387.3529718-CDS-A-nodosum_M_contig92:687587..6885441680870387.3529718-CDS-A-nodosum_M_contig92:687587..688544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig92 687588..688544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig92.53.2prot_A-nodosum_M_contig92.53.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig92 685932..688544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig92.53.2

>prot_A-nodosum_M_contig92.53.2 ID=prot_A-nodosum_M_contig92.53.2|Name=mRNA_A-nodosum_M_contig92.53.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=602bp
MSIHNVTYILLQASRACNIQNSEPFMSNLGAKTQSWQGPPDLPVMGGGFG
DTHPFQHPEGGRSHIDGPAGFGVPESDVGHAQNHGHVETYDHEGLQSPAS
ASLEEHRFATSPTSFPMPMSSIGSFETGGMVNAHGSAPRQTSTPQPWPAS
PRDYRNQQPDLDVNSITQALQQPHQAQMHLQQELFQMEQRQQRQHGVEQD
NHQQSAGTLSNSCAGFERLGQQSKQQQQQQQQRKLQHRQEHRRINSQVTS
LEQYEPSGRCDQQQQQQMQRSWQGNQQNQQRAQIRSAPLLNECVPPAAFA
QVSVQALMQQTSAIIARWKELQETLDVTSDSSTSNLSEQARARASLKRDL
TNLTQLADAQTKYMQRIKMRCNQETPMSTGVSGDSIASTSLLASTTPAGR
GGLTREEYNHPTKDSAIPVSAPRGAPVVPSPFPPENSIGAVLMHEGGDDD
VRDSLTTEQQDRSEDPAAAWQPTEWPSSTPSPRQTGVPNPPSPALPPQQV
ISLQHRLHNARQRLDRAEPRNKWVVLVDACLRLMPHEGSAFEQFFVNIQS
LLKNFNGPLGAEVAVALQSCFDERVFDPTDITRAQQRMADIYSQCARRVQ
R*
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mRNA from alignment at A-nodosum_M_contig92:685669..689382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig92.53.2 ID=mRNA_A-nodosum_M_contig92.53.2|Name=mRNA_A-nodosum_M_contig92.53.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3714bp|location=Sequence derived from alignment at A-nodosum_M_contig92:685669..689382+ (Ascophyllum nodosum dioecious)
CCGATGGCGTATGGTGGTTTAAATAATAAATGGACGCCGCCGCGGAACTC
GGGAGGAATCTCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGA
GCAATCTGACGCGGGACGGGACTGCCGAACCCGTCTCGCAAGACCAAATT
CACAGGCGCGAGCGGGGAGAGGAAAAAAATATTTCTCCCTCTTCAGCTGA
CGACGAGTAGAGCAGGATTGGTGGGCAACCTTACCCGGTTGATCCTTACC
CTTGCCATATGTGATGTCCATACATAACGTAACATACATACTGCTGCAAG
CCAGTAGAGCTTGTAATATACAAAATAGCGAACCCTTCATGTCAAACTTG
GGCGCCAAAACACAATCTTGGCAGGGCCCCCCGGACCTCCCCGTGATGGG
CGGAGGTTTCGGCGATACCCACCCTTTCCAGCATCCTGAGGGCGGTCGCT
CGCACATAGATGGGCCCGCGGGATTCGGTGTTCCCGAATCGGATGTTGGC
CATGCTCAGAACCACGGTCATGTCGAGACGTATGATCATGAAGGGCTACA
ATCTCCAGCCAGCGCATCGCTCGAGGAGCACCGATTTGCGACATCGCCGA
CAAGCTTCCCAATGCCCATGAGCAGTATCGGTAGTTTCGAAACTGGTGGT
ATGGTGAACGCGCACGGGTCAGCACCACGCCAGACGTCGACACCCCAGCC
TTGGCCGGCTTCGCCGAGGGACTATCGCAACCAGCAACCCGATCTTGATG
TGAACTCCATAACGCAGGTCAGCATCGTTCTTATTGAAAGCAGGTTGCGT
TTGGATTTGGCCCCCAAAACACACGAAGGGACACTTTGCCCAGAAAGGTA
GCCCAGAGAATCACCATGCTTGACGCCTGATTGCCGCGCCTTTGGTTTCG
TGCGCCGCCTTTTTTCAAAAGTTGGCGCAAAGTAAACCGGCGACAAAATT
TCTTCTGCCTTCTTCGCGTGCAGGCCCTCCAGCAGCCTCATCAGGCACAG
ATGCATCTACAGCAGGAGCTCTTTCAGATGGAGCAGCGTCAACAACGTCA
ACATGGCGTTGAACAGGACAATCACCAGCAAAGCGCTGGAACGCTCAGCA
ATAGTTGCGCAGGGTTCGAGCGACTCGGCCAGCAGTCGAAACAACAACAG
CAGCAGCAGCAGCAACGAAAACTCCAACATCGGCAAGAACACCGACGCAT
AAACAGCCAGGTGACGTCCCTCGAGCAGTACGAACCCAGCGGCCGGTGTG
ACCAGCAGCAACAACAGCAAATGCAGCGGTCCTGGCAGGGGAACCAGCAA
AACCAACAGCGAGCGCAGGTAGGCGTAAAACGTAGGCTCGCAGGCAGTTT
AATTTTTGTTCGCGTGTGCATGCGTGACAGCCTTACAAAGCAGGAGCCAA
CTTTCCGCGACGAACGCTTTTGAACTGAGCCTGGGGCACACTTTCATCCA
CACTTCTCTGGCGAGCATGGTTTCCAGACGAAGAGACTGGATGTAACCGT
CCCCGTGTGACTTCCCGACGTTCTCGTCTGGCGTCCCCGCGAGGCGAACC
TTTACCGGCATTTTATACCCTTCTTGTTTGACCGCGTCATTGTGGCCGTC
TGTGGCTGCAACTCAAACGGCAAGTCCTGAGAGCATTCCGCCCTTCTCCA
ACGTCTTGCGCGCATATCAAAGGTATCGCCCCCGCAAGCGAAATTTGCTG
ACCGCCGGGTAGCACCTCCGTAGCTGTTGAAGTGCCACTGTCTATGTTTT
CGTTGAATTTGATGTAATGCGCATGTAACTGCCCTCGAGTACGATACTGC
CGCAGGCTGTAGCGATTGGACACTTGCGAGATGTACACCCAGATGGCGAC
TCTCATTCCACCATTCCCACCCCCTCCCTGGTCCCAATATCTGCCGCACT
TCGCCCGGAGGACGTCCAGATTCGGTCGGCGCCGTTGTTGAACGAGTGCG
TGCCGCCCGCAGCTTTTGCCCAAGTGAGCGTGCAGGCCCTCATGCAGCAG
ACCTCCGCGATCATAGCTAGGTGGAAGGAACTCCAGGAGACCTTGGACGT
GACCTCGGATTCTTCCACATCGAATCTCTCAGAGCAGGCGCGCGCTCGGG
CATCTCTCAAGCGGGATTTGACGAACCTGACGCAGCTGGCTGATGCCCAA
ACGAAGTACATGCAGAGGATCAAGATGCGATGCAATCAAGAAACGCCCAT
GAGCACGGGAGTGTCGGGGGATTCTATCGCTTCGACGTCGTTGCTGGCGT
CGACGACACCTGCGGGGCGAGGGGGCCTAACACGCGAAGAATACAACCAC
CCGACGAAGGATTCCGCCATCCCCGTGTCGGCGCCGCGCGGTGCCCCAGT
TGTGCCCTCTCCCTTCCCCCCCGAGAATTCGATCGGTGCGGTCTTGATGC
ACGAGGGCGGTGACGACGATGTTCGTGACTCTTTGACTACAGAACAGCAA
GACCGCTCCGAAGACCCGGCTGCGGCATGGCAACCAACGGAATGGCCGTC
CAGCACGCCTTCCCCCCGGCAAACCGGTGTGCCGAACCCGCCGTCGCCCG
CTCTACCGCCGCAGCAGGTGATCTCATTGCAGCACCGTCTCCACAACGCA
AGACAGCGGCTCGATCGCGCCGAACCGCGGAATAAGTGGGTTGTTCTCGT
GGACGCCTGCCTCAGGCTAATGCCCCACGAGGGCTCCGCATTCGAGCAGT
TTTTCGTGAACATTCAGAGCTTACTCAAAAACTTCAACGGACCGCTCGGC
GCCGAGGTCGCTGTCGCCCTCCAGAGTTGCTTCGATGAACGCGTGTTCGA
CCCCACGGACATCACGCGCGCTCAACAACGGATGGCGGACATTTACTCTC
AGTGCGCTCGGCGAGTTCAACGGTAAAGAGTAAAGTAAAATTGAGTTCTT
GTGTCGGGCCCCGTTGACATATGTCCGTTGTACAGCCGTGGGCGGCCTTG
AATATGGGTGGATCGAGTGGATGGCACTACGTTCACGCTGGTGGGTTGAC
CGCGTTGATTTCGTTGCCTGAGCTCTTGAGCTTCTAAGTGGTTACGATGA
TGTGTTTCAACGGAAGTTGGTTGGCCCGACGGACTAGATGGGCTGGAGTA
CATATCGAAACGTGTTTTTTTTGTGTTGCATGTTTGACGTGAGATGAATG
AAGATTATATTGATATTAACAGTACATCCGTGTAAGATCGAGGTTAGGTA
GGGGAGGTACTTGCAAGTATGTTGCGTGTCGTGCTGGCAAAATGTTTGCT
TGCTTCTACAATAGCTGCCTCGTGCGTGGGGGACGGTTCGTAAAAATGAC
CGTATTCATGAGATTTGCCAACAATCTTACAAACTTAGAGCTGTTTCTGA
GAAGCCAGATCCACTAGTATTGCGTAATATTACGAGTAGTACAAACTATT
ATAAAGATTCTTGGTAGGTACACTGCTTTGTTTCTTGCCAGGAGTTGGCA
ACAGACCAAGCGAGAGTGTGTCAAGAGAAACGCGTGCAGACTGCAAGCTT
ATCGTTTATAACCCAACCCCCTTTGAATATAAATTTGAAATTTGGAAGGA
AGCGATGTTGTTGCTGCCTGCATATTCCTGCCCCTCTAATGATTATTGCT
GTTAATATCGACTTTGCCTGCGGGAGGAAGGAAGAACCCAATTGAGCAAC
CGAGACAGGACTTGAAGCTACACCTTAACCTTTATATATCTGTTTTTCCC
ATTGTGAGCCTGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig92:685669..689382+

>mRNA_A-nodosum_M_contig92.53.2 ID=mRNA_A-nodosum_M_contig92.53.2|Name=mRNA_A-nodosum_M_contig92.53.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at A-nodosum_M_contig92:685669..689382+ (Ascophyllum nodosum dioecious)
ATGTCCATACATAACGTAACATACATACTGCTGCAAGCCAGTAGAGCTTG
TAATATACAAAATAGCGAACCCTTCATGTCAAACTTGGGCGCCAAAACAC
AATCTTGGCAGGGCCCCCCGGACCTCCCCGTGATGGGCGGAGGTTTCGGC
GATACCCACCCTTTCCAGCATCCTGAGGGCGGTCGCTCGCACATAGATGG
GCCCGCGGGATTCGGTGTTCCCGAATCGGATGTTGGCCATGCTCAGAACC
ACGGTCATGTCGAGACGTATGATCATGAAGGGCTACAATCTCCAGCCAGC
GCATCGCTCGAGGAGCACCGATTTGCGACATCGCCGACAAGCTTCCCAAT
GCCCATGAGCAGTATCGGTAGTTTCGAAACTGGTGGTATGGTGAACGCGC
ACGGGTCAGCACCACGCCAGACGTCGACACCCCAGCCTTGGCCGGCTTCG
CCGAGGGACTATCGCAACCAGCAACCCGATCTTGATGTGAACTCCATAAC
GCAGGCCCTCCAGCAGCCTCATCAGGCACAGATGCATCTACAGCAGGAGC
TCTTTCAGATGGAGCAGCGTCAACAACGTCAACATGGCGTTGAACAGGAC
AATCACCAGCAAAGCGCTGGAACGCTCAGCAATAGTTGCGCAGGGTTCGA
GCGACTCGGCCAGCAGTCGAAACAACAACAGCAGCAGCAGCAGCAACGAA
AACTCCAACATCGGCAAGAACACCGACGCATAAACAGCCAGGTGACGTCC
CTCGAGCAGTACGAACCCAGCGGCCGGTGTGACCAGCAGCAACAACAGCA
AATGCAGCGGTCCTGGCAGGGGAACCAGCAAAACCAACAGCGAGCGCAGA
TTCGGTCGGCGCCGTTGTTGAACGAGTGCGTGCCGCCCGCAGCTTTTGCC
CAAGTGAGCGTGCAGGCCCTCATGCAGCAGACCTCCGCGATCATAGCTAG
GTGGAAGGAACTCCAGGAGACCTTGGACGTGACCTCGGATTCTTCCACAT
CGAATCTCTCAGAGCAGGCGCGCGCTCGGGCATCTCTCAAGCGGGATTTG
ACGAACCTGACGCAGCTGGCTGATGCCCAAACGAAGTACATGCAGAGGAT
CAAGATGCGATGCAATCAAGAAACGCCCATGAGCACGGGAGTGTCGGGGG
ATTCTATCGCTTCGACGTCGTTGCTGGCGTCGACGACACCTGCGGGGCGA
GGGGGCCTAACACGCGAAGAATACAACCACCCGACGAAGGATTCCGCCAT
CCCCGTGTCGGCGCCGCGCGGTGCCCCAGTTGTGCCCTCTCCCTTCCCCC
CCGAGAATTCGATCGGTGCGGTCTTGATGCACGAGGGCGGTGACGACGAT
GTTCGTGACTCTTTGACTACAGAACAGCAAGACCGCTCCGAAGACCCGGC
TGCGGCATGGCAACCAACGGAATGGCCGTCCAGCACGCCTTCCCCCCGGC
AAACCGGTGTGCCGAACCCGCCGTCGCCCGCTCTACCGCCGCAGCAGGTG
ATCTCATTGCAGCACCGTCTCCACAACGCAAGACAGCGGCTCGATCGCGC
CGAACCGCGGAATAAGTGGGTTGTTCTCGTGGACGCCTGCCTCAGGCTAA
TGCCCCACGAGGGCTCCGCATTCGAGCAGTTTTTCGTGAACATTCAGAGC
TTACTCAAAAACTTCAACGGACCGCTCGGCGCCGAGGTCGCTGTCGCCCT
CCAGAGTTGCTTCGATGAACGCGTGTTCGACCCCACGGACATCACGCGCG
CTCAACAACGGATGGCGGACATTTACTCTCAGTGCGCTCGGCGAGTTCAA
CGGTAA
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