mRNA_A-nodosum_M_contig9196.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9196.10.1
Unique NamemRNA_A-nodosum_M_contig9196.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.440e-50
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    4 ALKRLESEENGRKERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAETALRKADLKRRKNDEHPEEASV*IAHTAQMKDAAWMRWSICSC 375
            ALKR+E+EENGRKERGE CNLCG+S KTFE M YYCNGA+CNGKRIGRGRY Y+A GSNQWHWCS+CYND KDGEIIA AETA+RKADLKR+KNDE  E   V  A        +W    +C+C
Sbjct:  519 ALKRMEAEENGRKERGETCNLCGYSAKTFEPMTYYCNGAQCNGKRIGRGRYFYHATGSNQWHWCSSCYNDLKDGEIIALAETAVRKADLKRKKNDEQAEVGDVDNA-----SKLSWSFTGVCTC 637          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 9.550e-50
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    4 ALKRLESEENGRKERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAETALRKADLKRRKNDEHPEEASV 312
            ALKRLE+EEN RKERGE CNLCG+S KTFE M YYCNGA+CNGKRIGRGRY Y+A GSNQWHWCS+CYND KDGEIIA AETA+RKADLKR+KNDE  EE  V
Sbjct: 1431 ALKRLEAEENARKERGETCNLCGYSAKTFEPMTYYCNGAQCNGKRIGRGRYFYHATGSNQWHWCSSCYNDLKDGEIIALAETAVRKADLKRKKNDEQAEEPWV 1533          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A835YGT9_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGT9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.700e-21
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    7 LKRLESEENGRKERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAETALRKADLKRRKNDEHPEE 303
            L R+  +    +  G+ C LCG+ST T+E  NYYCNGA C   RI R  Y YY  G+NQ+HWC+ CY + +DG  I   +  L K DL R+KNDE  EE
Sbjct:  274 LVRIREDPEAMRVAGDRCALCGYSTLTWEPPNYYCNGASCGMARIRRNHY-YYTGGANQFHWCTQCYGELRDGAPIRVGDAVLAKRDLVRKKNDELQEE 371          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A7S1Y085_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y085_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.310e-20
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   10 KRLESEENGRKERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAE-TALRKADLKRRKNDEHPEEASV 312
            +RL  ++    + GE C LCG S + FEL NYYCNGA CNG RI R    Y++A SNQ HWC  CYN  KD E I   + T + K++LKR K+++  EE  V
Sbjct:  133 RRLAQDQESAVKNGEACMLCGESQRNFELPNYYCNGASCNGARIRRSVNYYHSA-SNQHHWCVPCYNQLKDNEPIYMLDGTHINKSELKREKHNKSSEEPWV 233          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A7R9WMR1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMR1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.580e-19
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    7 LKRLESEENGRKERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEI-IASAETALRKADLKRRKNDEHPEEASV 312
            +++L++E+  R++  + C LCGF    FE   ++CNG  C  KRI R  + +Y  G+NQ+ WC+ CYN+  DG I I   +  ++KADLK++KNDE  EE+ V
Sbjct:    5 MEQLDNEDRERRQSDKACVLCGFEKLLFEPPVFFCNGMNCASKRIRRNSH-FYIGGNNQYFWCNPCYNEL-DGNIPIELVDLTVKKADLKKKKNDEQHEESWV 105          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A7R9YAI7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAI7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.040e-18
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   43 ERGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAE-TALRKADLKRRKNDEHPEEASV 312
            + GE C LC  S + FEL NYYCNGA CNG RI R    YY + SNQ+HWC  CYN  KD E I   + T + KA+LKR K+++  EE  V
Sbjct:  739 QNGEACMLCCKSQRNFELPNYYCNGASCNGARIRRS-VNYYHSKSNQYHWCVPCYNQLKDNEPIYMLDGTHIYKAELKREKHNKSHEEPWV 828          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A1V9Y5R1_9STRA (Histone acetyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5R1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.820e-7
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 1
Query:    4 ALK-RLESEENGRKE--RGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASA-------------ETALRKADLKRRKNDEHPEEASV 312
            ALK +LE E N R E  R E+C LCG  +  F     +C+G  C G RI R  + YY+    ++HWCSACY   KDG +  S              +T L KA L ++KN E  EE  V
Sbjct:  897 ALKAQLEDELNKRCELRREEMCQLCGGDSFKFAPCMLFCSGP-CAG-RIRRHTH-YYSDPRGEYHWCSACYKQMKDGPLDMSLLPASTNASGEEPLKTVLLKAHLLKKKNSEVAEEPWV 1012          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A418C260_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C260_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-6
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1
Query:    4 ALK-RLESEENGRKE--RGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGE-------IIASAETA---LRKADLKRRKNDEHPEEASV 312
            ALK +LESE   R E  R E+C LCG  +  F     +C+G  C G RI R  + YY+    ++HWCS+C+   KDG        + A+A TA   L KA L ++KN E  EE  V
Sbjct:  917 ALKEQLESELKSRCEQRREEMCQLCGGDSFKFAPCMLFCSGP-CTG-RIRRHTH-YYSDPRGEFHWCSSCFKQMKDGPLDMTLLPVSATASTADAPLTKALLLKKKNSEVAEEPWV 1029          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: A0A485LE37_9STRA (Histone acetyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE37_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-6
Identity = 45/116 (38.79%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    4 ALK-RLESEENGRKE--RGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEI----------IASAETALRKADLKRRKNDEHPEEASV 312
            ALK +LESE   R E  R E+C LCG  +  F     +C+G  C G RI R  + YY+    ++HWCS+C+   KDG +           AS +  L KA L ++KN E  EE  V
Sbjct:  962 ALKVQLESELKNRCEQRREEMCQLCGGDSFKFAPCMLFCSGP-CAG-RIRRHTH-YYSDPRGEYHWCSSCFKQMKDGPLDMSLLPVSANAASGDPPLTKALLLKKKNSEVAEEPWV 1074          
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Match: W4H137_9STRA (Histone acetyltransferase n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H137_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-6
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1
Query:    4 ALK-RLESEENGRKE--RGEICNLCGFSTKTFELMNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGE-------IIASAETA---LRKADLKRRKNDEHPEEASV 312
            ALK +LESE   R E  R E+C LCG  +  F     +C+G  C G RI R  + YY+    ++HWCS+C+   KDG        + A+A TA   L KA L ++KN E  EE  V
Sbjct:  979 ALKEQLESELKSRCEQRREEMCQLCGGDSFKFAPCMLFCSGP-CTG-RIRRHTH-YYSDPRGEFHWCSSCFKQMKDGPLDMTLLPVSATASTADAPLTKALLLKKKNSEVAEEPWV 1091          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9196.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT9_ECTSI1.440e-5069.35Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KPY4_9PHAE9.550e-5080.58Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A835YGT9_9STRA6.700e-2147.47Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A7S1Y085_9STRA9.310e-2048.04Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]
A0A7R9WMR1_9STRA4.580e-1941.75Histone acetyltransferase (Fragment) n=1 Tax=Crasp... [more]
A0A7R9YAI7_9STRA6.040e-1851.65Histone acetyltransferase (Fragment) n=1 Tax=Pingu... [more]
A0A1V9Y5R1_9STRA3.820e-739.50Histone acetyltransferase n=1 Tax=Achlya hypogyna ... [more]
A0A418C260_9STRA1.270e-640.52Histone acetyltransferase (Fragment) n=1 Tax=Aphan... [more]
A0A485LE37_9STRA1.300e-638.79Histone acetyltransferase n=1 Tax=Aphanomyces stel... [more]
W4H137_9STRA1.300e-640.52Histone acetyltransferase n=11 Tax=Aphanomyces ast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9196contigA-nodosum_M_contig9196:16354..17875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPT9
PFAMsBromodomain,HAT_KAT11,PHD,ZZ,zf-TAZ
Model size544
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.03e-33
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota
EC2.3.1.48
Descriptionhistone acetyltransferase activity
Cds size219
COG categoryBK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870380.6366227-UTR-A-nodosum_M_contig9196:16353..164491680870380.6366227-UTR-A-nodosum_M_contig9196:16353..16449Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9196 16354..16449 +
1680870380.6769211-UTR-A-nodosum_M_contig9196:17635..176431680870380.6769211-UTR-A-nodosum_M_contig9196:17635..17643Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9196 17636..17643 +
1680870380.6875618-UTR-A-nodosum_M_contig9196:17654..178751680870380.6875618-UTR-A-nodosum_M_contig9196:17654..17875Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9196 17655..17875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870380.6536088-CDS-A-nodosum_M_contig9196:16449..165511680870380.6536088-CDS-A-nodosum_M_contig9196:16449..16551Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 16450..16551 +
1680870380.665813-CDS-A-nodosum_M_contig9196:17518..176351680870380.665813-CDS-A-nodosum_M_contig9196:17518..17635Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9196 17519..17635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9196.10.1prot_A-nodosum_M_contig9196.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9196 16450..17635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9196.10.1

>prot_A-nodosum_M_contig9196.10.1 ID=prot_A-nodosum_M_contig9196.10.1|Name=mRNA_A-nodosum_M_contig9196.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MNYYCNGARCNGKRIGRGRYIYYAAGSNQWHWCSACYNDFKDGEIIASAE
TALRKADLKRRKNDEHPEEASV*
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mRNA from alignment at A-nodosum_M_contig9196:16354..17875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9196.10.1 ID=mRNA_A-nodosum_M_contig9196.10.1|Name=mRNA_A-nodosum_M_contig9196.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1522bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:16354..17875+ (Ascophyllum nodosum dioecious)
CAGGCCCTCAAGCGACTGGAGTCAGAGGAGAACGGACGAAAGGAGCGGGG CGAAATCTGCAACCTTTGCGGCTTCTCGACGAAGACCTTCGAACTGATGA ATTACTATTGCAATGGAGCCCGTTGCAATGGCAAGAGGATCGGTCGCGGC CGTTATATCTACTATGCCGCTGGTTCCAACCAGTGGCACTGGTGCTCTGT AAGTTTCGATCCTTCGATCCACGTCTCTCCGCTCGCTCCCCATCCCTCGT GTTACCGAAATAACTTTATAACTTTGAGAGCTCTTGCCGAAATATAATAT TTGTAGAGGGACCAAGTAGTATTATAGTGCTGTATGTAGGACGTTTAGCT CTCCTGCAGCGGTGTGTAACCTTGTGTCTTTTTTTTTCACCTGACCATCG AAATTTGCAAGTTACTAGAAATAGAAAACCACTGTTTTCTCTGTTCCCAT CTGGTCCCTTCTGTTATTATTTGCTTTATCTCTTGAGCTTCGGTCGTACG GAAGACGCCTTTTCTCCCGATTGCCATCACGCAAAATTGCTGACGACGAC TCTCTTATTTTTGTCTTATTTTTTCAACGACTTTGTCGGAGATTTTCAAG GAGGTCAAGTTGTCCAACGCAGCGCAACGGCTTTTTTAATTTAATTGTGC ACGAGAAACATTTGTTTATGACGGGCTTGAAGGGGGTCTCAACTTTTTCT GAGTTGGCCTTTTCAGATGCTACTGTTGAACTGTGTTAATGGTCTGCGCT CGTTTCATCACATACAGCTCTTTCGACATCGGTACATCATTTTCACACAA TCGATTCTGTTTTACTTTTCAGGCAGTCAAGTCACCACTTCCACACGGAT ATGACAAAACACAAACAAACAACAAACAACAAACGGGCATGCCAGCGAAA ATCAAAGTTAAGTCAAGACCACCATCTAAATCCTTCAGCTGCAATTTACT CGCCTCCTCCGGCATCGTCGTTCTAAGATCGGCCGTCTCGCCGAGTGATC TCGCCTTCCTTGAGAAGAGATCGGGGGAGAGGTTTCTCGGCGGCGTTCCG AGAAGGCAAGCCTCCCTCTCTTCGTTCGAGTCAGCGAGGAGAGAACCGGT CCCGCCGCCGATGGCTGTGTGAAACTCTCCCACCCGCGCACCTCCCCCCC CCCCCCCGATGGCAGGCGTGCTACAATGATTTTAAGGATGGCGAGATCAT TGCCTCAGCAGAGACGGCGTTGCGGAAGGCCGATCTAAAGAGGAGGAAGA ACGACGAGCACCCGGAGGAGGCGAGTGTGTAAATCGCACAGCACCGCACA GCACAGCACAAATGAAGGATGCCGCTTGGATGAGATGGTCTATTTGCAGC TGTGGTTTCTGGTGCTGTGCTGTGCGATTTTCGCTGGCATGCCCGTTTGT TTGTGTTTTGTCATATCCGTGTGGAAGTGGTGACTTGACTGTCTGAAAAG TAAAACAGAATCGATCGTATGCGAAAATGATGTACCGATGTCGAAAGAGC TGTATATGTGATGAAACGAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9196:16354..17875+

>mRNA_A-nodosum_M_contig9196.10.1 ID=mRNA_A-nodosum_M_contig9196.10.1|Name=mRNA_A-nodosum_M_contig9196.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig9196:16354..17875+ (Ascophyllum nodosum dioecious)
ATGAATTACTATTGCAATGGAGCCCGTTGCAATGGCAAGAGGATCGGTCG
CGGCCGTTATATCTACTATGCCGCTGGTTCCAACCAGTGGCACTGGTGCT
CTGCGTGCTACAATGATTTTAAGGATGGCGAGATCATTGCCTCAGCAGAG
ACGGCGTTGCGGAAGGCCGATCTAAAGAGGAGGAAGAACGACGAGCACCC
GGAGGAGGCGAGTGTGTAA
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