mRNA_A-nodosum_M_contig9180.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9180.1.1
Unique NamemRNA_A-nodosum_M_contig9180.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.420e-16
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
            LVTGATGGVGRRVV+ L ++GV VRAMARNKSKA AML+  K    + G  LD+VVA+I D+SSLTPSLF+ +  V+S
Sbjct:  158 LVTGATGGVGRRVVELLRQKGVSVRAMARNKSKALAMLTEGK--ETKGGSGLDVVVANIIDKSSLTPSLFKDVAAVVS 233          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: W7TT61_9STRA (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT61_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.730e-12
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVL 231
            LVTGATGGVGRRVV  LL +G+RVRA+ARN+ KA AML+  +    E G +L++V ADI D ++LTP L E +  V+
Sbjct:  118 LVTGATGGVGRRVVSLLLEKGIRVRALARNEQKALAMLNGGQ--KPEPGALLEIVNADIRDPAALTPELMEGVTAVI 192          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: K8YQM7_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM7_NANGC)

HSP 1 Score: 74.3 bits (181), Expect = 2.990e-12
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVL 231
            LVTGATGGVGRRVV  LL +G+RVRA+ARN+ KA AML+  +    E G +L++V ADI D ++LTP L E +  V+
Sbjct:  118 LVTGATGGVGRRVVSLLLEKGIRVRALARNEQKALAMLNGGQ--KPEPGALLEIVNADIRDPAALTPELMEGVTAVI 192          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A0G4GLY8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GLY8_9ALVE)

HSP 1 Score: 70.1 bits (170), Expect = 8.030e-11
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGD----VLDLVVADICDRSSLTPSLFE 213
            LV GATGGVGRR+V++LL++G  VRA+ARN+SKA AMLS  +  +  +G+    +LD+  ADI     LTP +FE
Sbjct:  132 LVVGATGGVGRRIVEKLLKQGFNVRALARNRSKALAMLSGGEEPSGTRGEDGSGLLDIRQADITKMEELTPDVFE 206          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.510e-10
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE-VLWTVLSHQSPVR 252
            LVTGATGGVG+RV   L+++GVRVRA+ RNKSKA A L N K  + +   +L++VV D+    SL  S+F  V   VL H + V+
Sbjct:   33 LVTGATGGVGKRVADGLMKKGVRVRALVRNKSKALAYLCNGKEPSPDS--LLEIVVGDLTKVESLKASIFRGVQAAVLCHAAIVK 115          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A2P6TSK9_CHLSO (NAD(P)-binding Rossmann-fold superfamily n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSK9_CHLSO)

HSP 1 Score: 65.9 bits (159), Expect = 2.320e-9
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE 213
            LVTGATGG GRRVV  LL RG RVRA+ R+  KA  +L+ +  G    G  L+LV AD+  R +L P +FE
Sbjct:  112 LVTGATGGTGRRVVARLLARGRRVRALVRDVQKARQLLAGLPAGT---GGSLELVAADVTQRQTLLPEMFE 179          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A8J4BTV8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BTV8_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.340e-9
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
            +VTGATGGVGRRVV  LL  G +VRA+ R+  KA  MLS++ V     G  L+L +AD+  R +L P +FE +  V+S
Sbjct:  112 MVTGATGGVGRRVVARLLAAGKQVRALVRDLDKAKTMLSDLPVA---AGGKLELALADVVQRQTLLPEMFEDIRAVVS 186          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A383W9U3_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W9U3_TETOB)

HSP 1 Score: 64.7 bits (156), Expect = 6.260e-9
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
            LVTGATGGVG+RVVQ+LL +G  VRA+ R+  KA  +L ++ V     G  L LV ADI  R +L+P +F+ +  V+S
Sbjct:  417 LVTGATGGVGKRVVQQLLAQGRVVRALVRDVDKAKQLLGSLPVA---AGGCLQLVAADISQRQTLSPDMFDGVRAVVS 491          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A8J4LYS7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LYS7_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 7.950e-9
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
            +VTGATGGVGRRVV  LL  G  VRA+ R+  KA  MLS + V     G  L+L  AD+  R +L P +FE +  V+S
Sbjct:  112 MVTGATGGVGRRVVARLLAAGKHVRALVRDLDKAKTMLSGLPVA---AGGKLELAAADVVQRQTLLPEMFEGVRAVVS 186          
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: D8TRL9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRL9_VOLCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.450e-8
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE 213
            +VTGATGGVGRRVV  LL  G  VRA+ R+  KA +MLS + V     G  L+L  AD+  R +L P +FE
Sbjct:   80 MVTGATGGVGRRVVSRLLAAGKHVRALVRDLEKAKSMLSELPVA---AGGKLELAAADVVQRQTLLPEMFE 147          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW5_9PHAE9.420e-1664.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TT61_9STRA2.730e-1255.84Nadh:ubiquinone oxidoreductase complex i intermedi... [more]
K8YQM7_NANGC2.990e-1255.84Nadh:ubiquinone oxidoreductase complex i intermedi... [more]
A0A0G4GLY8_9ALVE8.030e-1152.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2UWN3_9STRA6.510e-1049.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2P6TSK9_CHLSO2.320e-952.11NAD(P)-binding Rossmann-fold superfamily n=1 Tax=C... [more]
A0A8J4BTV8_9CHLO2.340e-948.72Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A383W9U3_TETOB6.260e-948.72Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A8J4LYS7_9CHLO7.950e-948.72Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
D8TRL9_VOLCA1.450e-850.70Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9180contigA-nodosum_M_contig9180:5713..6473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL63
PFAMsCIA30,NAD_binding_10
Model size536
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.66e-07
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size198
COG categoryGM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870377.4417994-UTR-A-nodosum_M_contig9180:5712..59721680870377.4417994-UTR-A-nodosum_M_contig9180:5712..5972Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9180 5713..5972 -
1680870377.4839547-UTR-A-nodosum_M_contig9180:6395..64731680870377.4839547-UTR-A-nodosum_M_contig9180:6395..6473Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9180 6396..6473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870377.4548535-CDS-A-nodosum_M_contig9180:5972..61671680870377.4548535-CDS-A-nodosum_M_contig9180:5972..6167Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9180 5973..6167 -
1680870377.4668477-CDS-A-nodosum_M_contig9180:6392..63951680870377.4668477-CDS-A-nodosum_M_contig9180:6392..6395Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9180 6393..6395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9180.1.1prot_A-nodosum_M_contig9180.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9180 5973..6395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9180.1.1

>prot_A-nodosum_M_contig9180.1.1 ID=prot_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
MARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTV
LSHQSPVRLVWHCRP*
back to top

mRNA from alignment at A-nodosum_M_contig9180:5713..6473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9180.1.1 ID=mRNA_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=761bp|location=Sequence derived from alignment at A-nodosum_M_contig9180:5713..6473- (Ascophyllum nodosum dioecious)
TTAGTCACCGGGGCGACGGGAGGTGTAGGTCGGCGTGTGGTGCAGGAGCT GCTACGGCGAGGAGTGCGCGTGCGAGCCATGGTACGCTCGATATTGAAAC CATTTTTTTATGAGGAGTAGATCATGCGTTCATGACGAGTATAGTTGTCT ACGGGATGGTGATACAAGATTGATGGTGATCGGTGGTAGTATCAGTGACG GAGGTGCTGTAGAGTGCTAAGGTGCATCGTAATGGCGCCGTTTGACATTT TATGGCTGTTGTGTCTTCCGATCCGTGGATTCGTTCCCAACGTTTGACGT GATAAGGCGCGGAACAAGTCTAAAGCGACGGCAATGCTTTCCAACGTCAA AGTCGGCAACGCCGAGCAAGGGGATGTCCTCGACTTGGTTGTGGCGGACA TCTGCGATAGATCGTCGCTTACTCCATCCTTATTCGAGGTACTGTGGACC GTGTTGAGTCACCAGTCACCAGTCAGACTCGTATGGCACTGCCGCCCTTA GCAGATTGTCCAGTGAGGTTCCTCGTCCGTTGTGGGATACCCATATATAT ATGCTTGACAAGCTGTCGACCTCATGTTTGATATTGTACGGAATAAGATT GCCAGGTGAATCTTGCGCTTTGTTTTCTTTTGGACACTATTCTCAGGCTG CACTATAATTGGAGATTCTCAGCGTGGTTTTTGATCGTTAGTCACTCACG ATGCGGATAGAGTAGTTCTATGTGGACCAATAGGGGGCCAGGATAGGTTT CCTCATTTGGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9180:5713..6473-

>mRNA_A-nodosum_M_contig9180.1.1 ID=mRNA_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig9180:5713..6473- (Ascophyllum nodosum dioecious)
ATGGCGCGGAACAAGTCTAAAGCGACGGCAATGCTTTCCAACGTCAAAGT
CGGCAACGCCGAGCAAGGGGATGTCCTCGACTTGGTTGTGGCGGACATCT
GCGATAGATCGTCGCTTACTCCATCCTTATTCGAGGTACTGTGGACCGTG
TTGAGTCACCAGTCACCAGTCAGACTCGTATGGCACTGCCGCCCTTAG
back to top