mRNA_A-nodosum_M_contig9180.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 9.420e-16 Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
LVTGATGGVGRRVV+ L ++GV VRAMARNKSKA AML+ K + G LD+VVA+I D+SSLTPSLF+ + V+S
Sbjct: 158 LVTGATGGVGRRVVELLRQKGVSVRAMARNKSKALAMLTEGK--ETKGGSGLDVVVANIIDKSSLTPSLFKDVAAVVS 233
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: W7TT61_9STRA (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT61_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.730e-12 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVL 231
LVTGATGGVGRRVV LL +G+RVRA+ARN+ KA AML+ + E G +L++V ADI D ++LTP L E + V+
Sbjct: 118 LVTGATGGVGRRVVSLLLEKGIRVRALARNEQKALAMLNGGQ--KPEPGALLEIVNADIRDPAALTPELMEGVTAVI 192
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: K8YQM7_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM7_NANGC) HSP 1 Score: 74.3 bits (181), Expect = 2.990e-12 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVL 231
LVTGATGGVGRRVV LL +G+RVRA+ARN+ KA AML+ + E G +L++V ADI D ++LTP L E + V+
Sbjct: 118 LVTGATGGVGRRVVSLLLEKGIRVRALARNEQKALAMLNGGQ--KPEPGALLEIVNADIRDPAALTPELMEGVTAVI 192
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A0G4GLY8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GLY8_9ALVE) HSP 1 Score: 70.1 bits (170), Expect = 8.030e-11 Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGD----VLDLVVADICDRSSLTPSLFE 213
LV GATGGVGRR+V++LL++G VRA+ARN+SKA AMLS + + +G+ +LD+ ADI LTP +FE
Sbjct: 132 LVVGATGGVGRRIVEKLLKQGFNVRALARNRSKALAMLSGGEEPSGTRGEDGSGLLDIRQADITKMEELTPDVFE 206
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 6.510e-10 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE-VLWTVLSHQSPVR 252
LVTGATGGVG+RV L+++GVRVRA+ RNKSKA A L N K + + +L++VV D+ SL S+F V VL H + V+
Sbjct: 33 LVTGATGGVGKRVADGLMKKGVRVRALVRNKSKALAYLCNGKEPSPDS--LLEIVVGDLTKVESLKASIFRGVQAAVLCHAAIVK 115
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A2P6TSK9_CHLSO (NAD(P)-binding Rossmann-fold superfamily n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSK9_CHLSO) HSP 1 Score: 65.9 bits (159), Expect = 2.320e-9 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE 213
LVTGATGG GRRVV LL RG RVRA+ R+ KA +L+ + G G L+LV AD+ R +L P +FE
Sbjct: 112 LVTGATGGTGRRVVARLLARGRRVRALVRDVQKARQLLAGLPAGT---GGSLELVAADVTQRQTLLPEMFE 179
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A8J4BTV8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BTV8_9CHLO) HSP 1 Score: 65.9 bits (159), Expect = 2.340e-9 Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
+VTGATGGVGRRVV LL G +VRA+ R+ KA MLS++ V G L+L +AD+ R +L P +FE + V+S
Sbjct: 112 MVTGATGGVGRRVVARLLAAGKQVRALVRDLDKAKTMLSDLPVA---AGGKLELALADVVQRQTLLPEMFEDIRAVVS 186
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A383W9U3_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W9U3_TETOB) HSP 1 Score: 64.7 bits (156), Expect = 6.260e-9 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
LVTGATGGVG+RVVQ+LL +G VRA+ R+ KA +L ++ V G L LV ADI R +L+P +F+ + V+S
Sbjct: 417 LVTGATGGVGKRVVQQLLAQGRVVRALVRDVDKAKQLLGSLPVA---AGGCLQLVAADISQRQTLSPDMFDGVRAVVS 491
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: A0A8J4LYS7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LYS7_9CHLO) HSP 1 Score: 64.3 bits (155), Expect = 7.950e-9 Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVLS 234
+VTGATGGVGRRVV LL G VRA+ R+ KA MLS + V G L+L AD+ R +L P +FE + V+S
Sbjct: 112 MVTGATGGVGRRVVARLLAAGKHVRALVRDLDKAKTMLSGLPVA---AGGKLELAAADVVQRQTLLPEMFEGVRAVVS 186
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Match: D8TRL9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRL9_VOLCA) HSP 1 Score: 63.5 bits (153), Expect = 1.450e-8 Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 LVTGATGGVGRRVVQELLRRGVRVRAMARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFE 213
+VTGATGGVGRRVV LL G VRA+ R+ KA +MLS + V G L+L AD+ R +L P +FE
Sbjct: 80 MVTGATGGVGRRVVSRLLAAGKHVRALVRDLEKAKSMLSELPVA---AGGKLELAAADVVQRQTLLPEMFE 147 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9180.1.1 >prot_A-nodosum_M_contig9180.1.1 ID=prot_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp MARNKSKATAMLSNVKVGNAEQGDVLDLVVADICDRSSLTPSLFEVLWTVback to top mRNA from alignment at A-nodosum_M_contig9180:5713..6473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9180.1.1 ID=mRNA_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=761bp|location=Sequence derived from alignment at A-nodosum_M_contig9180:5713..6473- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9180:5713..6473- >mRNA_A-nodosum_M_contig9180.1.1 ID=mRNA_A-nodosum_M_contig9180.1.1|Name=mRNA_A-nodosum_M_contig9180.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig9180:5713..6473- (Ascophyllum nodosum dioecious)back to top |