mRNA_A-nodosum_M_contig9171.5.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9171.5.2
Unique NamemRNA_A-nodosum_M_contig9171.5.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9171.5.2 vs. uniprot
Match: D7G239_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G239_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 8.170e-18
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  173 QDEAASRLMLREKRLRTEMERACKALREERDDRVCKVAAAKENLREKLEQLSSMYXXXXXXXXXXXXXXTNAEDELRERASVDQRKAEQREEQGVRRRIRAMMIE 487
            Q+EAA RL+ RE R+  E+ER+CKAL  ERD+RV  VAA K+NLR KLEQLS+MY                AE+EL++RA  DQRKA +RE++GVRRR+RA+M+E
Sbjct:  289 QEEAAMRLVQREARINLEVERSCKALAAERDERVSGVAAVKDNLRGKLEQLSTMYEEVSTRMNNLEKAYAQAENELKDRALADQRKAAEREDRGVRRRVRAIMLE 393
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BLAST of mRNA_A-nodosum_M_contig9171.5.2 vs. uniprot
Match: A0A6H5JN10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN10_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.640e-17
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  173 QDEAASRLMLREKRLRTEMERACKALREERDDRVCKVAAAKENLREKLEQLSSMYXXXXXXXXXXXXXXTNAEDELRERASVDQRKAEQREEQGVRRRIRAMMIE 487
            Q+EAA RL+ RE R+  E+ER+CKAL  ERD+RV  VAA K+NLR KLEQLS MY                AE EL++RA  DQRKA +RE++GVRRR+RA+M+E
Sbjct:  146 QEEAAMRLVQREARINLEVERSCKALAAERDERVSGVAAVKDNLRGKLEQLSIMYEEVSTRMDNLEKAYAQAESELKDRALADQRKAVEREDRGVRRRVRAIMLE 250
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9171.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G239_ECTSI8.170e-1855.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN10_9PHAE1.640e-1755.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9171contigA-nodosum_M_contig9171:18057..21467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2209
Hectar predicted targeting categoryother localisation
Exons3
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.129951-UTR-A-nodosum_M_contig9171:18056..194301680870376.129951-UTR-A-nodosum_M_contig9171:18056..19430Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9171 18057..19430 -
1680870376.176903-UTR-A-nodosum_M_contig9171:21307..214671680870376.176903-UTR-A-nodosum_M_contig9171:21307..21467Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9171 21308..21467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870376.140785-CDS-A-nodosum_M_contig9171:19430..198681680870376.140785-CDS-A-nodosum_M_contig9171:19430..19868Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 19431..19868 -
1680870376.1529956-CDS-A-nodosum_M_contig9171:20626..207281680870376.1529956-CDS-A-nodosum_M_contig9171:20626..20728Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 20627..20728 -
1680870376.1648092-CDS-A-nodosum_M_contig9171:21172..213071680870376.1648092-CDS-A-nodosum_M_contig9171:21172..21307Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9171 21173..21307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9171.5.2prot_A-nodosum_M_contig9171.5.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9171 19431..21307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9171.5.2

>prot_A-nodosum_M_contig9171.5.2 ID=prot_A-nodosum_M_contig9171.5.2|Name=mRNA_A-nodosum_M_contig9171.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=225bp
MCLDQDEAASRLMLREKRLRTEMERACKALREERDDRVCKVAAAKENLRE
KLEQLSSMYEEVSKRLEELKMAYTNAEDELRERASVDQRKAEQREEQGVR
RRIRAMMIEQSKNALDDGVEIGERSSARSEETPSTIEAEQPPKLQPQVQK
RQQSQQQQQQQRVTGRSREGTPVKGAAKVKRSGSRDRRRLSAGSVDSADA
PVGVGLGRGVSAVRRRRASVELRR*
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mRNA from alignment at A-nodosum_M_contig9171:18057..21467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9171.5.2 ID=mRNA_A-nodosum_M_contig9171.5.2|Name=mRNA_A-nodosum_M_contig9171.5.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3411bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:18057..21467- (Ascophyllum nodosum dioecious)
TGTTATCTCCTCTTCTTTTCCTTTCCTTTTTTTTCTTCTTGTCTCTCGTT
ACTGTACTGTAGTATAATGACTAATAATAATAATAATAATAATACTTTGC
TACCGTACTGTACGTGCATGAACCGTATTTATCGTCACGAATAAAAAACA
AAAACAAAAAATGTGTCTTGATCAAGACGAGGCGGCGTCGAGGTTGATGC
TTCGCGAGAAACGCCTCCGTACGGAAATGGAGCGCGCGTGCAAAGCTCTG
AGAGAGGAACGCGACGATCGCGTGTGCAAGGTCGCTGCCGCGAAGGTACA
CTGTCTGTAATGTGCAGTAGTAAGGATCATAATGATCATAGTCTAATGAT
CTTTAATATGCAGGACAAGTAATACCAAGTACTTACTACTTCGAAGTATA
TTATAATACTGTACCCCTTTGAAGATAATGATCCAATCCGGAGTTGCCGT
GAACTTCCTCCGAATATTGGTGCAGTATCGCTTGATGAAACACTCCATTC
CATTGCATTGGATGCCGTTCCTTCCCATTGTACCAGCATTTGAGTTGAGT
TGTTTCCCTTGTTATTTAGAGCGAAATAGTATACTGGTGTTAGTGGAGTA
GAAAATGAGCGCGCCGAGAAAAAACAAACTAAACCAAACCCCACCCAGCG
TTTGTTATCCGCCCCCCCCCCCCAAATCCCTACCGGAGTTCCATGCGAAT
AGCGTTTTCCTCTTTCTTCTTGCCGGTTGCCGAGCGCAGGAGAACCTTCG
CGAGAAGCTGGAGCAGCTGTCGAGCATGTACGAGGAGGTTTCGAAGAGAC
TAGAGGAGTTGAAGATGGCCTACACCAACGCCGAGGACGAGGTTGGACCT
TACACTTTATGCCTTAAACACCGTACCTGACATAATAATTTGATTCTTAC
AGGACACTTCCGCGCAGTTTTTCGTGCTCGCTCGGAAATATACCTGGCAG
GCGTGATCGATCGTTCGGGGTAAAGGGGATTATTTGTTGGTGATGGAAGA
GACAAAATGCATAGTACGATATACACTAATGTTAGTATAATACACGGTTA
TGCTTGGCTTGGATATAATAATAGAGCTACAGCGTTAATACTTGTATATT
ATGTAGACTGTAGGTAGCAAGGAAATCTAATAGAAAACCAATGCTGTATT
CTATTGATAACTCGGTGGGGGGGGGGGGGGTTAATTTTACACTGAGTTGG
TCGATTTTATGTCTCCACTGTACTTTGTGCAATACAATACAATGCAATAC
AAAACAATTCAATACCTTGCACTTTATTCAGTACACTTTATACAGTAGAA
ACGACAGCGCAAACCGTACCTGGTATATAAAGGACAACACGCGCGACAAG
TAGCTCTACTGCACGATATGAATATTTGTAGTTTTAATAGTGGTCCTGTA
GCCTATATAATGCTATAGTCATTACATTATAGTTAGTACCATGTGCTACC
GTATACTAGAGCTGCATTATTTGTAATACATATTTGTGTTAATATTATTT
ATATTTCGTCGTGCAACACGAAGACGTCTCCCGCTCTACAAAACTACTGT
AATTACTGTACTTTTTTTAACTTTTTTTTTGCTCTTCTTCTTTTTGAAGT
TGAGGGAAAGAGCAAGCGTGGACCAGAGGAAGGCAGAGCAGAGGGAGGAG
CAAGGCGTGCGCCGTCGTATCCGCGCCATGATGATCGAACAAAGCAAAAA
CGCCTTAGACGATGGAGTCGAGATCGGAGAGCGGTCCTCGGCGCGCTCGG
AGGAAACGCCTTCGACGATCGAGGCGGAGCAGCCGCCGAAGCTACAGCCC
CAGGTCCAGAAGCGCCAGCAGAGTCAGCAGCAGCAGCAGCAGCAGCGCGT
GACAGGCAGATCTAGGGAAGGGACGCCGGTGAAGGGCGCCGCCAAAGTGA
AGAGAAGTGGGAGCAGAGATCGCCGCCGTCTCTCCGCGGGGTCTGTCGAT
AGCGCCGACGCACCAGTCGGGGTAGGCCTAGGGAGAGGCGTAAGCGCTGT
CAGGAGGCGCCGGGCGAGCGTGGAACTCAGGCGCTGACTCACCAGCTGAT
TGACTGACCGAAGAACTTGACTGTCTCAATATATATTGTTTTCAAGAGAT
CTACTGGCGGTTGTGTGTGTGTGTGTATGTGTTGCTTTTCTTTCTGTAGT
TAGCGTGCTGCGAAGAGCATCACCAGCATCAGGATCATCAGCATCATGTA
ACACGCACAAAGACGTTTGTTTTTCGACAACACTCCGCCGCCCCTCGCCC
TGACGCTTTCGACAACCTTGGTCAGCCTCGAGCGCGGCGAGGCCTCGTAT
TGTAAGAGGCTTTCGCGCGCGCGCACGTCTTAAAATGCCGATGATATTGA
TGAGTGCCCTCAAGAGCGGCGAGATTCCAAGATTGCATTGAAAGATGGAT
GATGATATCCATGAGTGCCTTCAAGAAGAGCGGCGATATTTACATTTCAT
CATGCCATTGGTGGATGAATGATGATGTGATGATATTGATGCTGTACAAG
CAACTTGGAAAAGGATGAAGCCGTCCTTGGTTTTACAAAAAGCAGTACAA
ACTAAAGTACAGCAGAAGTGTTGATTGGAGATACTTCTACAGAGTGTATG
AAAGCGTTTTGCAAGCCTTCTTCTCTCAATAATAGTCTACACCAGGTATG
TATTATATAGAGGCACGGCTGGTCCAACGTTTGCAATGTGCAGGGCGCGA
ACTACTGCGCGCTCCTCAAAATATGCACTGTCATCATGTGGTGTCATGTA
TGTAGCTGTTTCGATACCACTACAACAACTGTAGTACAGGTTTTACCGGA
AGTGGCCGAGTAGTGTCTTGTCTCGTTATATATTTTAAGGTTGTTGATAC
CATAGATGTTCTATGCGATCGATATTTGCACTGCTAGTAGTTGTCCCGAT
CACCCCCTTAGCGGGGGGGGGAGTTGGGTCGATCTGTCCATGCGATTTTG
ACCTTTTGAGTTAGGGTGGCGGGCGAGCGGAGACAGACGTTCGCTTCCCC
GTGGGTGATTTTCCGTGTCTTCCAAATACTACTTCGTTCAAAAGGTGAAC
CGGGTAAAAAATACTCTGGTATGCAAGGATCAATAATGTGTACAGTAGAA
AGTGCCTATTTTCACGACATATTAAGTGTATGTAGTTCTGTTCTTCGTAA
GTCTACGGTAGAATACGTCTAATATTATAGAGAGATACGCGTCTTGGAGT
GCGATTATTGCTTTCTTGTTTTTATCTATTATCTAATATAAAATAACTGG
TACTAAAGTTTTGCGCCTCCTTAATTTTTGGTCGACTTGGTATAATACAT
GTTGTCAAGTGCAAATATTATACTTTACTGTAGTATACAGCGCCAACGCC
TTTAAAATTGTGTTGATACAAAATTACAGTATCTCTCTACAGCCTACACA
CTAATATCTAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9171:18057..21467-

>mRNA_A-nodosum_M_contig9171.5.2 ID=mRNA_A-nodosum_M_contig9171.5.2|Name=mRNA_A-nodosum_M_contig9171.5.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=675bp|location=Sequence derived from alignment at A-nodosum_M_contig9171:18057..21467- (Ascophyllum nodosum dioecious)
ATGTGTCTTGATCAAGACGAGGCGGCGTCGAGGTTGATGCTTCGCGAGAA
ACGCCTCCGTACGGAAATGGAGCGCGCGTGCAAAGCTCTGAGAGAGGAAC
GCGACGATCGCGTGTGCAAGGTCGCTGCCGCGAAGGAGAACCTTCGCGAG
AAGCTGGAGCAGCTGTCGAGCATGTACGAGGAGGTTTCGAAGAGACTAGA
GGAGTTGAAGATGGCCTACACCAACGCCGAGGACGAGTTGAGGGAAAGAG
CAAGCGTGGACCAGAGGAAGGCAGAGCAGAGGGAGGAGCAAGGCGTGCGC
CGTCGTATCCGCGCCATGATGATCGAACAAAGCAAAAACGCCTTAGACGA
TGGAGTCGAGATCGGAGAGCGGTCCTCGGCGCGCTCGGAGGAAACGCCTT
CGACGATCGAGGCGGAGCAGCCGCCGAAGCTACAGCCCCAGGTCCAGAAG
CGCCAGCAGAGTCAGCAGCAGCAGCAGCAGCAGCGCGTGACAGGCAGATC
TAGGGAAGGGACGCCGGTGAAGGGCGCCGCCAAAGTGAAGAGAAGTGGGA
GCAGAGATCGCCGCCGTCTCTCCGCGGGGTCTGTCGATAGCGCCGACGCA
CCAGTCGGGGTAGGCCTAGGGAGAGGCGTAAGCGCTGTCAGGAGGCGCCG
GGCGAGCGTGGAACTCAGGCGCTGA
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